Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudoperonospora_20cubensis_20[genbank_20GCA_5F000252605.1_202012- 03-13] 35,539 sequences; 64,332,776 total letters Query= NC_031080.1 Length=160985 Score E Sequences producing significant alignments: (Bits) Value seq1633 93.3 4e-14 seq6617 86.0 6e-12 >seq1633 Length=6651 Score = 93.3 bits (102), Expect = 4e-14 Identities = 66/76 (87%), Gaps = 0/76 (0%) Strand=Plus/Plus Query 100842 ATGCGAAGGTAGCTCAGCTGGTAGAGCGCCACCTTGCCAAGGTGGAGGTCGCGGGATCGT 100901 ||||||| |||||||| ||||||||||| ||||||||||||| ||||||||||| ||| Sbjct 6534 ATGCGAAAATAGCTCAGTTGGTAGAGCGCGACCTTGCCAAGGTCGAGGTCGCGGGTTCGA 6593 Query 100902 AACCCGTTCTTCGCTC 100917 |||||| ||||||| Sbjct 6594 GCCCCGTTTTTCGCTC 6609 >seq6617 Length=2135 Score = 86.0 bits (94), Expect = 6e-12 Identities = 89/117 (76%), Gaps = 0/117 (0%) Strand=Plus/Plus Query 121526 ACCTACGGCATCTTGGTCTACCAGGAACAGCTGATCCGCACCGCCAAGGAGCTGGCCGGG 121585 |||||||| ||| ||||||||||||| ||| |||| | |||||| ||| ||||| ||| Sbjct 1569 ACCTACGGGATCATGGTCTACCAGGAGCAGGTGATGCAGACCGCCCAGGTGCTGGGCGGC 1628 Query 121586 TTCACTCCGGGCGAGGCCGAGCGTCTGCGCAAGGGCATCGGCAAGAAGAAGATGGAG 121642 | | | | ||||| ||||| | ||||| | ||| |||||||||||| | ||| Sbjct 1629 TACTCGCTGGGCGGCGCCGACCTCTTGCGCCGTGCCATGGGCAAGAAGAAGGTCGAG 1685 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 514795207025800