Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudoperonospora_20cubensis_20[genbank_20GCA_5F000252605.1_202012- 03-13] 35,539 sequences; 64,332,776 total letters Query= NC_031091.1 Length=43277 Score E Sequences producing significant alignments: (Bits) Value seq35299 127 6e-25 seq1231 125 2e-24 >seq35299 Length=2832 Score = 127 bits (140), Expect = 6e-25 Identities = 152/199 (76%), Gaps = 8/199 (4%) Strand=Plus/Minus Query 10255 CACGCCGGTACGCAGCCCGCAGAGCAACGGCATGGCAGAGAGCTTCGTTAAGACAATCAA 10314 |||||| || ||||||||||||||||||||||||| ||||||||||| || || |||| Sbjct 2188 CACGCCCGTCTGCAGCCCGCAGAGCAACGGCATGGCCGAGAGCTTCGTCAACACCTTCAA 2129 Query 10315 GCGCGACTACGTGGCGCACATGCCCAAGCCGGATCGAG-AGACAG-CCTTGCGCAACCTG 10372 ||||||||| ||||||| |||| | | || || | |||| | || |||||| ||| Sbjct 2128 GCGCGACTATGTGGCGCGCATGGACCTGAGTGA-CGCGCAGACGGTACTGGCGCAA-CTG 2071 Query 10373 ACGATTGCCTTCGAGCATTACAACGAGCAGCATCCGCA--CAGCGCCTTGAAATACCGCT 10430 | ||||||||||| | ||||||| ||||||||| | ||| ||||| || | Sbjct 2070 CCAGCGGCCTTCGAGCACTTCAACGAGGTGCATCCGCATTCTTCGC--TGAAAATTCGTT 2013 Query 10431 CGCCGAGGGAATTCAGGCG 10449 |||| |||| |||||||| Sbjct 2012 CGCCTCGGGAGTTCAGGCG 1994 >seq1231 Length=8178 Score = 125 bits (138), Expect = 2e-24 Identities = 138/183 (75%), Gaps = 3/183 (2%) Strand=Plus/Minus Query 37439 TGAGCACGATCATCATGTCGGCCTGCTGGCCTCTCCAGGGCATGAGCCCCGCACAGAAGG 37498 |||||||||| |||||| ||||||||||||| || || ||| ||| || ||||||| Sbjct 1423 TGAGCACGATGATCATGGCGGCCTGCTGGCCGCT---GGCAATGTCCCCGGCGCAGAAGG 1367 Query 37499 CGGTGCTGATCTCGCTGGCAGACCAGGCGAACGATCAGGGCGTGTGCTGGCCGGCTGTGG 37558 | |||||||| || ||||| |||||||| |||||| | |||||||||||||| | || | Sbjct 1366 CTGTGCTGATTTCCCTGGCCGACCAGGCCAACGATGACGGCGTGTGCTGGCCTGGCGTTG 1307 Query 37559 ACAGCATAGCGACGCGTTGCTGCCTGTCGAAACGCGCGGTGCAGCAGGCCATCAAGTGGC 37618 | || |||| ||| |||||||| | || || || || | |||||| |||| Sbjct 1306 CGACGATTGCGAAGCGCACATGCCTGTCCGAGCGTGCCGTACAAGATGCCATCGCATGGC 1247 Query 37619 TGC 37621 ||| Sbjct 1246 TGC 1244 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 138306406508802