Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudoperonospora_20cubensis_20[genbank_20GCA_5F000252605.1_202012- 03-13] 35,539 sequences; 64,332,776 total letters Query= NC_031098.1 Length=40749 Score E Sequences producing significant alignments: (Bits) Value seq9534 86.0 2e-12 >seq9534 Length=1511 Score = 86.0 bits (94), Expect = 2e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 22982 CTTAATGCGTATGATGATGGGGTGGGTGTTTGGACTATTGGTTTTGGAACCATTAAGTAT 23041 |||| ||| |||||||| || || || ||||||||||| | ||| || | || Sbjct 1186 CTTAGTGCTTATGATGACGGTACTGGCGTCTGGACTATTGGATATGGCACGACGCGATAC 1245 Query 23042 CCGAATGGTGTCCGAGTGAAAAAAGGTGATACCTGCACTGAACAGCAAGCTGAAACCTAT 23101 || |||||| || || | |||| ||| ||| || |||| ||| |||| ||| Sbjct 1246 CCTAATGGTAAGCGTGTAAGTGAAGGAGATCGATGCTCTCTTGAGCAGGCTAAAACTTAT 1305 Query 23102 TTGAAAAATGATTTAACTAAGTTTGAAGTAGCTATTAATAAATTAGTTAAAGTGCCTCTT 23161 || | ||||||||| | ||||| || | |||| | || ||||||||| | Sbjct 1306 ATGCAGCATGATTTAAAGATATTTGAGCGTGCAGTAAATAGTTCTGTAAAAGTGCCTTTA 1365 Query 23162 AGTCAGAATCAATTCGATGCACTAGCATCTTTCACATATAATCTTGG 23208 | |||||||||||||||||||||| ||| | | ||||| |||| Sbjct 1366 AAACAGAATCAATTCGATGCACTAGTCTCTCTAGCTTATAACATTGG 1412 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 130220220527298