Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudoperonospora_20cubensis_20[genbank_20GCA_5F000252605.1_202012- 03-13] 35,539 sequences; 64,332,776 total letters Query= NC_031107.1 Length=246291 Score E Sequences producing significant alignments: (Bits) Value seq6884 192 9e-44 seq23650 179 6e-40 seq10726 174 2e-38 seq29161 152 8e-32 seq776 145 1e-29 seq10355 131 3e-25 seq2111 118 2e-21 seq10022 104 4e-17 seq3205 98.7 2e-15 seq32881 89.7 8e-13 seq482 89.7 8e-13 >seq6884 Length=2068 Score = 192 bits (212), Expect = 9e-44 Identities = 225/304 (74%), Gaps = 0/304 (0%) Strand=Plus/Plus Query 201790 CATGAAACAATATCTGGACTTACTGCGTGATGTTCGCGAAAACGGGGATGTAAAAGCCGA 201849 |||||| ||||| || || | ||||| |||| | || | || | | || | || Sbjct 1121 CATGAAGCAATACCTCGATCTGCTGCGCCATGTGCTGGAGCAGGGCGCCGAGAAGTCGGA 1180 Query 201850 CCGTACCGGTACGGGCACCCTCTCTGTTTTCGGACGCCAGATGCGCTTTAACTTACAAGA 201909 ||| ||||| || ||||| | | || ||||| | ||||||||||| || | | || Sbjct 1181 CCGCACCGGCACCGGCACGCGCAGCGTGTTCGGCTGGCAGATGCGCTTCGACCTCAACGA 1240 Query 201910 AGGTTTTCCGCTGGTCACCACCAAAAAGGTTCACCTTCGTTCAATCATCCATGAGCTGCT 201969 ||| || ||||||||||||||||| || | ||||| || || |||||||| |||||||| Sbjct 1241 AGGCTTCCCGCTGGTCACCACCAAGAAACTGCACCTGCGCTCGATCATCCACGAGCTGCT 1300 Query 201970 GTGGTTCCTCATGGGTGACACCAACATCCAGTATTTGAAAGACAACAACGTCACCATCTG 202029 ||||||||| | ||| || ||||||||| || | || |||||||| |||| |||||| Sbjct 1301 GTGGTTCCTGAAGGGCGAAACCAACATCGCCTACCTCAAGGACAACAAGGTCAGCATCTG 1360 Query 202030 GGACGAATGGGCGGATAAAAACGGTGACTTAGGCCCGGTGTACGGTAAGCAATGGCGTAG 202089 |||||| ||||| || || || || | || ||||||||||| ||||| ||||| || Sbjct 1361 GGACGAGTGGGCTGACGCGAATGGCGAACTGGGGCCGGTGTACGGCAAGCAGTGGCGCAG 1420 Query 202090 CTGG 202093 ||| Sbjct 1421 TTGG 1424 >seq23650 Length=538 Score = 179 bits (198), Expect = 6e-40 Identities = 220/298 (74%), Gaps = 2/298 (1%) Strand=Plus/Minus Query 201790 CATGAAACAATATCTGGACTTACTGCGTGATGTTCGCGAAAACGGGGATGTAAAAGC-CG 201848 ||||||||| ||||| || | ||| | || | ||| | ||| | | |||| || Sbjct 317 CATGAAACAGTATCTTGAACTGATGCAAAAAGTGCTCGATGA-GGGCACGCCAAAGAACG 259 Query 201849 ACCGTACCGGTACGGGCACCCTCTCTGTTTTCGGACGCCAGATGCGCTTTAACTTACAAG 201908 | || ||||| || || || |||| |||| || | |||||||||||| ||| | || | Sbjct 258 ATCGCACCGGCACCGGTACGATCTCCATTTTTGGCCACCAGATGCGCTTCAACCTGCAGG 199 Query 201909 AAGGTTTTCCGCTGGTCACCACCAAAAAGGTTCACCTTCGTTCAATCATCCATGAGCTGC 201968 |||| |||||||||||||| ||||| || | || || ||||| ||||| |||| Sbjct 198 AAGGCTTTCCGCTGGTCACGACCAAGCGCTGCCATTTACGCTCGATCATTCATGAACTGC 139 Query 201969 TGTGGTTCCTCATGGGTGACACCAACATCCAGTATTTGAAAGACAACAACGTCACCATCT 202028 | |||||||| ||| |||||||||||| ||| || || || |||||| |||| | Sbjct 138 TCTGGTTCCTGCAGGGCGACACCAACATCGCTTATCTGCGCGAGAATAACGTCTCCATTT 79 Query 202029 GGGACGAATGGGCGGATAAAAACGGTGACTTAGGCCCGGTGTACGGTAAGCAATGGCG 202086 ||||||||||||||||| ||||||| || | ||||| || || |||||||| ||||| Sbjct 78 GGGACGAATGGGCGGATGAAAACGGCGATCTGGGCCCAGTTTATGGTAAGCAGTGGCG 21 >seq10726 Length=1340 Score = 174 bits (192), Expect = 2e-38 Identities = 179/234 (76%), Gaps = 0/234 (0%) Strand=Plus/Plus Query 201860 ACGGGCACCCTCTCTGTTTTCGGACGCCAGATGCGCTTTAACTTACAAGAAGGTTTTCCG 201919 || ||||||| | || ||||| | ||||||||||| || | | || || || ||| Sbjct 1 ACCGGCACCCGCAGCGTGTTCGGCTGGCAGATGCGCTTCGACCTCAACGATGGCTTCCCG 60 Query 201920 CTGGTCACCACCAAAAAGGTTCACCTTCGTTCAATCATCCATGAGCTGCTGTGGTTCCTC 201979 |||||||||||||| || | ||||| || || |||||||| ||||||||||||||||| Sbjct 61 CTGGTCACCACCAAGAAACTGCACCTGCGCTCGATCATCCACGAGCTGCTGTGGTTCCTG 120 Query 201980 ATGGGTGACACCAACATCCAGTATTTGAAAGACAACAACGTCACCATCTGGGACGAATGG 202039 | ||| |||||||| ||| || |||| |||||| | || ||||||||||| ||| Sbjct 121 AAGGGCGACACCAATATCGGCTACCTGAAGGACAACCAGGTGCGGATCTGGGACGAGTGG 180 Query 202040 GCGGATAAAAACGGTGACTTAGGCCCGGTGTACGGTAAGCAATGGCGTAGCTGG 202093 || || ||||| ||| | |||||||| ||||| ||||| ||||| |||||| Sbjct 181 GCCGACGCGAACGGCGACCTCGGCCCGGTCTACGGCAAGCAGTGGCGCAGCTGG 234 >seq29161 Length=379 Score = 152 bits (168), Expect = 8e-32 Identities = 196/268 (73%), Gaps = 2/268 (1%) Strand=Plus/Minus Query 201791 ATGAAACAATATCTGGACTTACTGCGTGATGTTCGCGAAAACGGGGATGTAAAAGCCG-A 201849 |||||||| ||||| ||| | |||| | || ||||| ||||| | | |||| | | Sbjct 271 ATGAAACAGTATCTCGACCTGATGCGCCACGTGCGCGACAACGGC-ACCTTCAAGCAGGA 213 Query 201850 CCGTACCGGTACGGGCACCCTCTCTGTTTTCGGACGCCAGATGCGCTTTAACTTACAAGA 201909 ||||||||| || || ||| | || |||| | |||||||||||| || | || Sbjct 212 CCGTACCGGCACCGGTACCTACAGCGTGTTCGCCCACCAGATGCGCTTCGACCTGGCCGA 153 Query 201910 AGGTTTTCCGCTGGTCACCACCAAAAAGGTTCACCTTCGTTCAATCATCCATGAGCTGCT 201969 |||||||| ||||| |||||||| ||| ||||| || ||||| || ||| |||| Sbjct 152 CGGTTTTCCCCTGGTGACCACCAAGAAGTGCCACCTCAAGTCGATCATTCACGAGTTGCT 93 Query 201970 GTGGTTCCTCATGGGTGACACCAACATCCAGTATTTGAAAGACAACAACGTCACCATCTG 202029 ||||||||| ||| |||||||||||| |||| |||| ||||| ||| |||||| Sbjct 92 GTGGTTCCTGCAGGGCGACACCAACATCAAGTACCTGAAGGACAATGGCGTACGCATCTG 33 Query 202030 GGACGAATGGGCGGATAAAAACGGTGAC 202057 |||||| ||||| || | ||||| ||| Sbjct 32 GGACGAGTGGGCCGACGAGAACGGCGAC 5 >seq776 Length=11329 Score = 145 bits (160), Expect = 1e-29 Identities = 181/248 (73%), Gaps = 0/248 (0%) Strand=Plus/Plus Query 201846 CCGACCGTACCGGTACGGGCACCCTCTCTGTTTTCGGACGCCAGATGCGCTTTAACTTAC 201905 ||||||||||||| |||||||| | | || ||||| | |||||||||||| || | Sbjct 10117 CCGACCGTACCGGCACGGGCACGCGCAGCGTGTTCGGCCACCAGATGCGCTTCGACCTGT 10176 Query 201906 AAGAAGGTTTTCCGCTGGTCACCACCAAAAAGGTTCACCTTCGTTCAATCATCCATGAGC 201965 ||||| |||||||||||||||||||| ||||| ||||| || ||||||| || | Sbjct 10177 CCGAAGGCTTTCCGCTGGTCACCACCAAGAAGGTGCACCTCAAGTCCATCATCCTGGAAC 10236 Query 201966 TGCTGTGGTTCCTCATGGGTGACACCAACATCCAGTATTTGAAAGACAACAACGTCACCA 202025 ||||||||||||| || |||| ||| | | | || | || | | ||||| Sbjct 10237 TGCTGTGGTTCCTGCGCGGCGACAGCAATGTGCGCTGGCTGCAGGAGCGCGGCTGCACCA 10296 Query 202026 TCTGGGACGAATGGGCGGATAAAAACGGTGACTTAGGCCCGGTGTACGGTAAGCAATGGC 202085 |||||||||||||||| | |||| ||| | |||||||| || || |||||||| Sbjct 10297 TCTGGGACGAATGGGCCCGCGAGGACGGCGACCTGGGCCCGGTCTATGGCGTGCAATGGC 10356 Query 202086 GTAGCTGG 202093 | | |||| Sbjct 10357 GCAACTGG 10364 Score = 113 bits (124), Expect = 7e-20 Identities = 194/274 (71%), Gaps = 6/274 (2%) Strand=Plus/Plus Query 202496 TGTCAGCTCTATCAGCGTAGTGCGGACATGTTCCTTGGCGTACCGTTTAACATCGCGTCT 202555 || ||||| || ||||| || |||||||| ||||| ||||| || || |||||||| Sbjct 10542 TGCCAGCTATACCAGCGCAGCGCGGACATCTTCCTGGGCGTTCCCTTCAACATCGCCAGC 10601 Query 202556 TACGCCTTGCTGGTACACATGTTTGCACAACAG-GCGAACATGGCGGTAGGCGACTTCGT 202614 ||||| ||||| |||||| | || || || |||| | || ||| ||||||||||| Sbjct 10602 TACGCGCTGCTGACCCACATGCTGGCCCAGCAATGCGACC-TGCAGGTGGGCGACTTCGT 10660 Query 202615 CTGGACAGGTGGTGATACGCATCTGTACTCCAACCATCTGGAACAAGCT-GACCTCCAAC 202673 |||||| ||||| || || | ||| |||||| || | | || | || ||| | Sbjct 10661 CTGGACCGGTGGCGACTGCCACATCTACAACAACCA-CTTCACCCAGGTCGAGACCCAGC 10719 Query 202674 TTACCCGTGA-CCCTAAACCGTTACCGAAGTTGGTTATCAAACGTAAGCCCGATTCCATC 202732 | | || | |||| || | |||| | || ||||| || |||||| |||||| Sbjct 10720 TGGCGCGCCAGCCCTTCGCC-TACCCGACGCTGCAGATCAAGCGCCGGCCCGACTCCATC 10778 Query 202733 TTCGACTACAAATTCGAAGACTTCGAGGTTGTCG 202766 |||| |||| | | ||| ||||||||||| |||| Sbjct 10779 TTCGGCTACGAGTACGAGGACTTCGAGGTCGTCG 10812 Score = 87.8 bits (96), Expect = 3e-12 Identities = 103/137 (75%), Gaps = 2/137 (1%) Strand=Plus/Plus Query 202204 CATTGACCAAATCGCCAAAGTGGTTGACCAGCTGCGTAATGACCCCGACAACCGTCGTAT 202263 ||| ||||| |||||| ||||||| | ||||| | |||| |||| ||| || || Sbjct 10385 CATCGACCAGATCGCCGAAGTGGTCAAGCAGCTCAAGAGCAACCCGGACAGCCGCCGCAT 10444 Query 202264 TATTGTCAGCGCCTGGAACGTGGCAGAGCTAGACG-AGATGGCCTTGGCCCCGTGTCATG 202322 || |||||||||||||||||||| || || | || ||||||| | || || || | Sbjct 10445 CATCGTCAGCGCCTGGAACGTGGCCGACCT-GCCGCAGATGGCGCTCATGCCCTGCCACG 10503 Query 202323 CGTTCTTCCAGTTCTAC 202339 | ||||||||||||||| Sbjct 10504 CCTTCTTCCAGTTCTAC 10520 >seq10355 Length=1388 Score = 131 bits (144), Expect = 3e-25 Identities = 118/146 (81%), Gaps = 2/146 (1%) Strand=Plus/Plus Query 201847 CGACCGTACCGGTACGGGCACCCTCTCTGTTTTCGGACGCCAGATGCGCTT-TAACTTAC 201905 ||| || |||||||||||||| | |||||| ||||| ||||||||| || | ||| | Sbjct 1244 CGATCGCACCGGTACGGGCACGCGCTCTGTCTTCGGCTACCAGATGCGTTTCGATCTTTC 1303 Query 201906 AAGAAGGTTTTCCGCTGGTCACCACCAAAAAGGTTCACCTTCGTTCAATCATCCATGAGC 201965 |||||| || ||| || | |||||||| ||| |||| || || || ||||||||||||| Sbjct 1304 -AGAAGGCTTCCCGGTGCTGACCACCAAGAAGCTTCATCTGCGCTCCATCATCCATGAGC 1362 Query 201966 TGCTGTGGTTCCTCATGGGTGACACC 201991 ||||||||||||| | ||| |||||| Sbjct 1363 TGCTGTGGTTCCTGAAGGGCGACACC 1388 >seq2111 Length=5547 Score = 118 bits (130), Expect = 2e-21 Identities = 151/208 (73%), Gaps = 0/208 (0%) Strand=Plus/Plus Query 201887 CAGATGCGCTTTAACTTACAAGAAGGTTTTCCGCTGGTCACCACCAAAAAGGTTCACCTT 201946 |||||||||||| || | ||||||||||| |||| || ||||||||| | |||||| Sbjct 2855 CAGATGCGCTTTGACCTTTCTGAAGGTTTTCCTATGGTTACTACCAAAAAGCTGCACCTT 2914 Query 201947 CGTTCAATCATCCATGAGCTGCTGTGGTTCCTCATGGGTGACACCAACATCCAGTATTTG 202006 || |||||| | || ||| ||||||| || | || || || || || ||||| Sbjct 2915 AAATCTATCATCTACGAACTGTTGTGGTTTCTGAAAGGCGATACGAATATTGGCTATTTA 2974 Query 202007 AAAGACAACAACGTCACCATCTGGGACGAATGGGCGGATAAAAACGGTGACTTAGGCCCG 202066 || || ||| || | ||||||||||| ||||| ||| |||| || || | || ||| Sbjct 2975 AATGAAAACGGAGTAAAAATCTGGGACGAGTGGGCAGATGAAAATGGCGAACTCGGTCCG 3034 Query 202067 GTGTACGGTAAGCAATGGCGTAGCTGGA 202094 || || || | |||||||| | ||||| Sbjct 3035 GTTTATGGCCATCAATGGCGAAACTGGA 3062 >seq10022 Length=1431 Score = 104 bits (114), Expect = 4e-17 Identities = 174/252 (69%), Gaps = 0/252 (0%) Strand=Plus/Minus Query 201842 AAAGCCGACCGTACCGGTACGGGCACCCTCTCTGTTTTCGGACGCCAGATGCGCTTTAAC 201901 |||| ||| || || || || ||||| || ||||| | ||||||||| || || Sbjct 1019 AAAGGCGATCGCACGGGCACCGGCACGAAAAGCGTCTTCGGCCACCAGATGCGGTTCGAC 960 Query 201902 TTACAAGAAGGTTTTCCGCTGGTCACCACCAAAAAGGTTCACCTTCGTTCAATCATCCAT 201961 | | ||||| ||||||||||| || ||||| || || ||||| || |||||| Sbjct 959 CTGAACGAAGGCTTTCCGCTGGTGACGACCAAGAAAGTGCACCTCAAATCCATCATCGTG 900 Query 201962 GAGCTGCTGTGGTTCCTCATGGGTGACACCAACATCCAGTATTTGAAAGACAACAACGTC 202021 || ||||||||||||||| || || ||| ||| | |||| || ||| Sbjct 899 GAATTGCTGTGGTTCCTCACCGGCTCCAGTGACAACCACTGGCTGAAGGAACGGGGCGTG 840 Query 202022 ACCATCTGGGACGAATGGGCGGATAAAAACGGTGACTTAGGCCCGGTGTACGGTAAGCAA 202081 || |||||||||||||||||| |||| ||| | ||||| || ||||| ||| Sbjct 839 ACGATCTGGGACGAATGGGCGCGCGCGGACGGCGACCTGGGCCCCGTCTACGGCGTGCAG 780 Query 202082 TGGCGTAGCTGG 202093 ||||| |||||| Sbjct 779 TGGCGCAGCTGG 768 Score = 102 bits (112), Expect = 1e-16 Identities = 104/136 (76%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 202204 CATTGACCAAATCGCCAAAGTGGTTGACCAGCTGCGTAATGACCCCGACAACCGTCGTAT 202263 ||| ||||| ||| | | ||| | ||| |||| || |||||||| || || || Sbjct 747 CATCGACCAGATCAGCCAGGTGATCGACACGCTGAAGAAGAACCCCGACTCGCGCCGCAT 688 Query 202264 TATTGTCAGCGCCTGGAACGTGGCAGAGCTAGACGAGATGGCCTTGGCCCCGTGTCATGC 202323 || |||||||||||||||||||| || || ||| |||||||| | ||||| ||||| Sbjct 687 CATCGTCAGCGCCTGGAACGTGGCCGATCTGGACAAGATGGCCCTCATGCCGTGCCATGC 628 Query 202324 GTTCTTCCAGTTCTAC 202339 |||||||||||||||| Sbjct 627 GTTCTTCCAGTTCTAC 612 >seq3205 Length=3996 Score = 98.7 bits (108), Expect = 2e-15 Identities = 141/196 (72%), Gaps = 2/196 (1%) Strand=Plus/Minus Query 202493 TCTTGTCAGCTCTATCAGCGTAGTGCGGACATGTTCCTTGGCGTACCGTTTAACATCGCG 202552 || || ||||| ||||| |||||||| ||| |||| | || || || |||||||| || Sbjct 2340 TCATGCCAGCTTTATCAACGTAGTGCAGACGTGTTTTTAGGGGTTCCTTTTAACATTGCC 2281 Query 202553 TCTTACGCCTTGCTGGTACACATGTTTGCACAACAG-GCGAACATGGCGGTAGGCGACTT 202611 ||| || || || |||||| |||| ||| | ||| || | | || ||||| Sbjct 2280 AGTTATGCTTTACTCACTCACATGATTGCTCAAGTGTGCGGTTTAGGAG-TCGGTGACTT 2222 Query 202612 CGTCTGGACAGGTGGTGATACGCATCTGTACTCCAACCATCTGGAACAAGCTGACCTCCA 202671 || |||||||| |||||||||||||| || ||| ||| | |||||||| | || || Sbjct 2221 TGTTTGGACAGGCGGTGATACGCATCTTTATGTCAATCATTTTGAACAAGCACAACTTCA 2162 Query 202672 ACTTACCCGTGACCCT 202687 | | || ||||| ||| Sbjct 2161 ATTGACACGTGAACCT 2146 >seq32881 Length=284 Score = 89.7 bits (98), Expect = 8e-13 Identities = 104/138 (75%), Gaps = 2/138 (1%) Strand=Plus/Minus Query 202490 CTTTCTTGTCAGCTCTATCAGCGTAGTGCGGACATGTTCCTTGGCGTACCGTTTAACATC 202549 || || || ||||| || ||||| ||||||||||| || || ||||| ||||| ||||| Sbjct 137 CTGTCGTGCCAGCTGTACCAGCGCAGTGCGGACATCTTTCTGGGCGTGCCGTTCAACATT 78 Query 202550 GCGTCTTACGCCTTGCTGGTACACATGTTTGCACAACAG-GCGAACATGGCGGTAGGCGA 202608 ||| |||||| ||||| |||||| | || || ||| ||| || | || ||||| Sbjct 77 GCGAGCTACGCCCTGCTGACGCACATGGTGGCGCAGCAGTGCG-ACCTTCAAGTTGGCGA 19 Query 202609 CTTCGTCTGGACAGGTGG 202626 |||| ||||||| || || Sbjct 18 CTTCATCTGGACCGGCGG 1 >seq482 Length=15596 Score = 89.7 bits (98), Expect = 8e-13 Identities = 54/57 (95%), Gaps = 0/57 (0%) Strand=Plus/Minus Query 618 AGTAGTTCAACTGGTAGAGCGTCGGTCTCCAAAACCGAATGTTGCAGGTTCGAGTCC 674 |||||||||| ||||||||||||||||||||||||||||||||| ||||||||||| Sbjct 69 AGTAGTTCAATTGGTAGAGCGTCGGTCTCCAAAACCGAATGTTGGGGGTTCGAGTCC 13 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 787653139428440