Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudoperonospora_20cubensis_20[genbank_20GCA_5F000252605.1_202012- 03-13] 35,539 sequences; 64,332,776 total letters Query= NC_031112.1 Length=59265 Score E Sequences producing significant alignments: (Bits) Value seq956 87.8 7e-13 >seq956 Length=9855 Score = 87.8 bits (96), Expect = 7e-13 Identities = 120/167 (72%), Gaps = 12/167 (7%) Strand=Plus/Minus Query 2904 CCACCATTGGCCCGACGTGCCGAACCTCGGCGACGTGACCGCTGTCG-------ACTGGT 2956 ||||| | ||||||||| ||||||||||||||||| || || ||| || | | Sbjct 2709 CCACCGGTTGCCCGACGTACCGAACCTCGGCGACGTCACGGCCATCGCCGACGCACAGAT 2650 Query 2957 CGCAGGTC--GAACCGGTCGACGTGCTGACGGGCGGGTTCCCCTGCCAAGACGTGTCGGC 3014 ||| | | | | | |||||||| ||| ||||| ||| ||||| ||| |||||| Sbjct 2649 CGCCGCCCTGGGCCAGATCGACGTGGTGATCGGCGGTAGCCCGTGCCAGGACCTGTCGGT 2590 Query 3015 CGCAGGGCGCCGCGCCGGCCTCACCGCCGGCACCCGCTCGGGCCTGT 3061 || ||||||||||| ||||| |||||| | |||||| | |||| Sbjct 2589 TGCCGGGCGCCGCGCTGGCCT---CGCCGGGGCGCGCTCGAGTCTGT 2546 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 189446415002586