Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudoperonospora_20cubensis_20[genbank_20GCA_5F000252605.1_202012- 03-13] 35,539 sequences; 64,332,776 total letters Query= NC_031126.1 Length=244840 Score E Sequences producing significant alignments: (Bits) Value seq10022 156 7e-33 seq23650 140 5e-28 seq29161 123 4e-23 seq6884 118 2e-21 seq10726 114 2e-20 >seq10022 Length=1431 Score = 156 bits (172), Expect = 7e-33 Identities = 224/316 (71%), Gaps = 0/316 (0%) Strand=Plus/Minus Query 200844 CTGTCAGCTGTATCAGCGTAGCGCTGATATGTTTTTAGGCGTGCCGTTCAACATTGCATC 200903 ||| |||||||| ||||| ||||| || || || | ||||||||||||||||| || Sbjct 570 CTGCCAGCTGTACCAGCGCAGCGCCGACATCTTCCTGGGCGTGCCGTTCAACATCGCCAG 511 Query 200904 ATACGCACTACTGATTCACATGGTAGCCCAACAGGTCAATATGACTGTCGGTGATTTCGT 200963 ||||| || || | |||||||| || |||||| | | || || || || ||| | Sbjct 510 CTACGCCCTGCTCACGCACATGGTGGCGCAACAGTGCGACCTGGAAGTGGGCGACTTCAT 451 Query 200964 ATGGACGGGTGGTGACGTACACATCTACAGCAATCACGAAGAGCAGGTTCGTCTGCAACT 201023 ||||| || || || |||||||||||||| || | |||||||| ||||| || Sbjct 450 CTGGACCGGCGGCGATTGCCACATCTACAGCAACCATGCCGAGCAGGTGGCGCTGCAGCT 391 Query 201024 GTCTCGTGATCCGCGTCCTTTACCGAAGTTGAAAATTCTTCGTAAGCCGGACTCTATCTT 201083 ||| || | ||| | | || | | || || || || ||||| | || ||||| Sbjct 390 GTCGCGCGCGCCGTTCGCGTACCCCACGCTGCGCATCCTGCGCAAGCCCGCTTCCATCTT 331 Query 201084 CGATTACAAGTTCGAAGACTTTGAGCTTACTGGTTACGAACCGCATCCTGCGATAAAAGC 201143 ||| ||| ||||||| ||||| ||| | || ||||||| || || || || || || Sbjct 330 CGACTACCAGTTCGAGGACTTCGAGGTGCAGGGCTACGAACACCACCCGGCCATCAAGGC 271 Query 201144 ACCGGTGGCGATATGA 201159 |||||||||| ||||| Sbjct 270 ACCGGTGGCGGTATGA 255 >seq23650 Length=538 Score = 140 bits (154), Expect = 5e-28 Identities = 151/202 (75%), Gaps = 0/202 (0%) Strand=Plus/Minus Query 200091 AAAGAAAGACCGTACCGGTANNNNNACCACGTCTATTTTCGGTGCACAGATGCGCTTCAA 200150 |||||| || || ||||| | || | || ||||| || |||||||||||||| Sbjct 266 AAAGAACGATCGCACCGGCACCGGTACGATCTCCATTTTTGGCCACCAGATGCGCTTCAA 207 Query 200151 TCTACAAGACGGCTTCCCATTGGTGACGACCAAGAAGTGCCATCTCCGTTCCATCATTCA 200210 || || || ||||| || |||| ||||||||| |||||| | || || |||||||| Sbjct 206 CCTGCAGGAAGGCTTTCCGCTGGTCACGACCAAGCGCTGCCATTTACGCTCGATCATTCA 147 Query 200211 CGAGCTGTTGTGGTTCCTTAACGGTGACACCAATATCAAGTATCTGAACGATAACAATGT 200270 || ||| | |||||||| | || |||||||| ||| |||||| ||| || || || Sbjct 146 TGAACTGCTCTGGTTCCTGCAGGGCGACACCAACATCGCTTATCTGCGCGAGAATAACGT 87 Query 200271 CACCATTTGGGACGAATGGGCG 200292 | |||||||||||||||||||| Sbjct 86 CTCCATTTGGGACGAATGGGCG 65 >seq29161 Length=379 Score = 123 bits (136), Expect = 4e-23 Identities = 124/158 (78%), Gaps = 6/158 (4%) Strand=Plus/Minus Query 200137 CAGATGCGCTTCAATCTACAAGACGGCTTCCCATTGGTGACGACCAAGAAGTGCCATCTC 200196 |||||||||||| | || ||||| || || ||||||| |||||||||||||| ||| Sbjct 175 CAGATGCGCTTCGACCTGGCCGACGGTTTTCCCCTGGTGACCACCAAGAAGTGCCACCTC 116 Query 200197 CGTTCCATCATTCACGAGCTGTTGTGGTTCCTTAACGGTGACACCAATATCAAGTATCTG 200256 || |||||||||||| || |||||||||| | || |||||||| |||||||| ||| Sbjct 115 AAGTCGATCATTCACGAGTTGCTGTGGTTCCTGCAGGGCGACACCAACATCAAGTACCTG 56 Query 200257 AACGATAACAATGTC--AC-CATTTGGGACGAATGGGC 200291 || | |||||| | || ||| |||||||| ||||| Sbjct 55 AAGG---ACAATGGCGTACGCATCTGGGACGAGTGGGC 21 >seq6884 Length=2068 Score = 118 bits (130), Expect = 2e-21 Identities = 119/155 (77%), Gaps = 0/155 (0%) Strand=Plus/Plus Query 200137 CAGATGCGCTTCAATCTACAAGACGGCTTCCCATTGGTGACGACCAAGAAGTGCCATCTC 200196 |||||||||||| | || | || |||||||| |||| || |||||||| || || Sbjct 1218 CAGATGCGCTTCGACCTCAACGAAGGCTTCCCGCTGGTCACCACCAAGAAACTGCACCTG 1277 Query 200197 CGTTCCATCATTCACGAGCTGTTGTGGTTCCTTAACGGTGACACCAATATCAAGTATCTG 200256 || || ||||| ||||||||| |||||||||| || || || ||||| ||| || || Sbjct 1278 CGCTCGATCATCCACGAGCTGCTGTGGTTCCTGAAGGGCGAAACCAACATCGCCTACCTC 1337 Query 200257 AACGATAACAATGTCACCATTTGGGACGAATGGGC 200291 || || ||||| |||| ||| |||||||| ||||| Sbjct 1338 AAGGACAACAAGGTCAGCATCTGGGACGAGTGGGC 1372 >seq10726 Length=1340 Score = 114 bits (126), Expect = 2e-20 Identities = 125/165 (76%), Gaps = 1/165 (1%) Strand=Plus/Plus Query 200137 CAGATGCGCTTCAATCTACAAGACGGCTTCCCATTGGTGACGACCAAGAAGTGCCATCTC 200196 |||||||||||| | || | || |||||||| |||| || |||||||| || || Sbjct 28 CAGATGCGCTTCGACCTCAACGATGGCTTCCCGCTGGTCACCACCAAGAAACTGCACCTG 87 Query 200197 CGTTCCATCATTCACGAGCTGTTGTGGTTCCTTAACGGTGACACCAATATCAAGTATCTG 200256 || || ||||| ||||||||| |||||||||| || || |||||||||||| || ||| Sbjct 88 CGCTCGATCATCCACGAGCTGCTGTGGTTCCTGAAGGGCGACACCAATATCGGCTACCTG 147 Query 200257 AACGATAACAATGTCACCATTTGGGACGAATGGGCGCGAGACGAA 200301 || || ||| | || || |||||||| ||||| ||| |||| Sbjct 148 AAGGACAACCAGGTGCGGATCTGGGACGAGTGGGC-CGACGCGAA 191 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 783012002112000