Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudoperonospora_20cubensis_20[genbank_20GCA_5F000252605.1_202012- 03-13] 35,539 sequences; 64,332,776 total letters Query= NC_031127.1 Length=240761 Score E Sequences producing significant alignments: (Bits) Value seq6884 215 8e-51 seq23650 199 6e-46 seq10726 192 9e-44 seq2111 156 6e-33 seq29161 152 8e-32 seq10022 145 1e-29 seq776 138 2e-27 seq10355 120 5e-22 seq11529 102 1e-16 seq3205 96.9 5e-15 seq32881 89.7 8e-13 >seq6884 Length=2068 Score = 215 bits (238), Expect = 8e-51 Identities = 197/249 (79%), Gaps = 0/249 (0%) Strand=Plus/Plus Query 196061 CGAGAAAGCTGACCGTACCGGCACGGGCACCATCTCTATTTTCGGGTATCAGATGCGTTT 196120 |||||| | ||||| |||||||| ||||| | | ||||| | |||||||| || Sbjct 1169 CGAGAAGTCGGACCGCACCGGCACCGGCACGCGCAGCGTGTTCGGCTGGCAGATGCGCTT 1228 Query 196121 TGACCTGCGCAAAGGGTTCCCGCTGGTCACCACCAAAAAGTTGCACCTGCGATCTATCAT 196180 ||||| | |||| |||||||||||||||||||| || |||||||||| || ||||| Sbjct 1229 CGACCTCAACGAAGGCTTCCCGCTGGTCACCACCAAGAAACTGCACCTGCGCTCGATCAT 1288 Query 196181 CCACGAACTGTTGTGGTTCCTGAACGGCGACACCAACATCCAGTATCTGAAAGACAACAA 196240 |||||| ||| ||||||||||||| ||||| ||||||||| || || || |||||||| Sbjct 1289 CCACGAGCTGCTGTGGTTCCTGAAGGGCGAAACCAACATCGCCTACCTCAAGGACAACAA 1348 Query 196241 CGTCAGTATCTGGGATGAGTGGGCAGATGAAGATGGCGATCTTGGCCCCGTCTACGGTAA 196300 ||||| |||||||| |||||||| || | ||||||| || || || || ||||| || Sbjct 1349 GGTCAGCATCTGGGACGAGTGGGCTGACGCGAATGGCGAACTGGGGCCGGTGTACGGCAA 1408 Query 196301 GCAGTGGCG 196309 ||||||||| Sbjct 1409 GCAGTGGCG 1417 >seq23650 Length=538 Score = 199 bits (220), Expect = 6e-46 Identities = 228/304 (75%), Gaps = 2/304 (1%) Strand=Plus/Minus Query 196014 ATGAAACAGTATTTGGAATTGATGCACACCGTGTTGAACGAAGGTCACGAGAAAGCT-GA 196072 |||||||||||| | ||| ||||||| | ||| | | || || |||| |||| || Sbjct 316 ATGAAACAGTATCTTGAACTGATGCAAAAAGTGCTCGATGAGGG-CACGCCAAAGAACGA 258 Query 196073 CCGTACCGGCACGGGCACCATCTCTATTTTCGGGTATCAGATGCGTTTTGACCTGCGCAA 196132 || |||||||| || || ||||| ||||| || | |||||||| || |||||| | Sbjct 257 TCGCACCGGCACCGGTACGATCTCCATTTTTGGCCACCAGATGCGCTTCAACCTGCAGGA 198 Query 196133 AGGGTTCCCGCTGGTCACCACCAAAAAGTTGCACCTGCGATCTATCATCCACGAACTGTT 196192 ||| || ||||||||||| ||||| | || | || || ||||| || |||||| | Sbjct 197 AGGCTTTCCGCTGGTCACGACCAAGCGCTGCCATTTACGCTCGATCATTCATGAACTGCT 138 Query 196193 GTGGTTCCTGAACGGCGACACCAACATCCAGTATCTGAAAGACAACAACGTCAGTATCTG 196252 ||||||||| | ||||||||||||||| |||||| || || |||||| || || Sbjct 137 CTGGTTCCTGCAGGGCGACACCAACATCGCTTATCTGCGCGAGAATAACGTCTCCATTTG 78 Query 196253 GGATGAGTGGGCAGATGAAGATGGCGATCTTGGCCCCGTCTACGGTAAGCAGTGGCGTGC 196312 ||| || ||||| |||||| | |||||||| ||||| || || |||||||||||||| || Sbjct 77 GGACGAATGGGCGGATGAAAACGGCGATCTGGGCCCAGTTTATGGTAAGCAGTGGCGCGC 18 Query 196313 ATGG 196316 ||| Sbjct 17 CTGG 14 >seq10726 Length=1340 Score = 192 bits (212), Expect = 9e-44 Identities = 168/209 (80%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 196101 TTCGGGTATCAGATGCGTTTTGACCTGCGCAAAGGGTTCCCGCTGGTCACCACCAAAAAG 196160 ||||| | |||||||| || ||||| | | || |||||||||||||||||||| || Sbjct 19 TTCGGCTGGCAGATGCGCTTCGACCTCAACGATGGCTTCCCGCTGGTCACCACCAAGAAA 78 Query 196161 TTGCACCTGCGATCTATCATCCACGAACTGTTGTGGTTCCTGAACGGCGACACCAACATC 196220 |||||||||| || ||||||||||| ||| ||||||||||||| ||||||||||| ||| Sbjct 79 CTGCACCTGCGCTCGATCATCCACGAGCTGCTGTGGTTCCTGAAGGGCGACACCAATATC 138 Query 196221 CAGTATCTGAAAGACAACAACGTCAGTATCTGGGATGAGTGGGCAGATGAAGATGGCGAT 196280 || ||||| |||||| | || | |||||||| |||||||| || | | ||||| Sbjct 139 GGCTACCTGAAGGACAACCAGGTGCGGATCTGGGACGAGTGGGCCGACGCGAACGGCGAC 198 Query 196281 CTTGGCCCCGTCTACGGTAAGCAGTGGCG 196309 || ||||| |||||||| ||||||||||| Sbjct 199 CTCGGCCCGGTCTACGGCAAGCAGTGGCG 227 Score = 102 bits (112), Expect = 1e-16 Identities = 151/213 (71%), Gaps = 6/213 (3%) Strand=Plus/Plus Query 196754 CTGTCAGCTTTACCAGCGCAGTGCAGACGTCTTCCTCGGTGTCCCGTTCAACATCGCTTC 196813 ||| ||||| ||||||||||| | ||| |||||||||| || |||||||||||||| Sbjct 411 CTGCCAGCTCTACCAGCGCAGCGGCGACATCTTCCTCGGCGTGCCGTTCAACATCGCCAG 470 Query 196814 GTACGCTCTGTTGGTTCACATGGTGGCACAGCAGGTCA---ATATGGTGGCGGGTGATTT 196870 ||||| ||| || ||||||||||| ||||| || ||| | ||| || || Sbjct 471 CTACGCGCTGCTGACCCACATGGTGGC---GCAGGCCACCGGCCTGGGCGTGGGCGACTT 527 Query 196871 CGTCTGGACGGGCGGCGATACCCATCTGTACTCTAACCATCTGGAACAGGCCACGTTGCA 196930 ||| ||| || || | || ||||| || |||||| | || |||||| ||| Sbjct 528 CGTGCATACGCTGGGTGACGCGCACCTGTATTCGAACCATTTCGAGCAGGCCCGCGAGCA 587 Query 196931 GCTCTCCCGTGTACCGCATGATCTGCCTAAGCT 196963 ||| || |||| ||||| | ||||| ||||| Sbjct 588 GCTGTCGCGTGAACCGCGCGCGCTGCCGAAGCT 620 >seq2111 Length=5547 Score = 156 bits (172), Expect = 6e-33 Identities = 161/211 (76%), Gaps = 0/211 (0%) Strand=Plus/Plus Query 196099 TTTTCGGGTATCAGATGCGTTTTGACCTGCGCAAAGGGTTCCCGCTGGTCACCACCAAAA 196158 |||| || ||||||||||| |||||||| |||| || || |||| || ||||||| Sbjct 2844 TTTTTGGTTATCAGATGCGCTTTGACCTTTCTGAAGGTTTTCCTATGGTTACTACCAAAA 2903 Query 196159 AGTTGCACCTGCGATCTATCATCCACGAACTGTTGTGGTTCCTGAACGGCGACACCAACA 196218 || ||||||| |||||||||| |||||||||||||||| ||||| ||||| || || | Sbjct 2904 AGCTGCACCTTAAATCTATCATCTACGAACTGTTGTGGTTTCTGAAAGGCGATACGAATA 2963 Query 196219 TCCAGTATCTGAAAGACAACAACGTCAGTATCTGGGATGAGTGGGCAGATGAAGATGGCG 196278 | ||| | || || ||| || | |||||||| ||||||||||||||| |||||| Sbjct 2964 TTGGCTATTTAAATGAAAACGGAGTAAAAATCTGGGACGAGTGGGCAGATGAAAATGGCG 3023 Query 196279 ATCTTGGCCCCGTCTACGGTAAGCAGTGGCG 196309 | || || || || || || | || ||||| Sbjct 3024 AACTCGGTCCGGTTTATGGCCATCAATGGCG 3054 >seq29161 Length=379 Score = 152 bits (168), Expect = 8e-32 Identities = 198/271 (73%), Gaps = 2/271 (1%) Strand=Plus/Minus Query 196013 GATGAAACAGTATTTGGAATTGATGCACACCGTGTTGAACGAAGGTCACGAGAAAGCTG- 196071 ||||||||||||| | || |||||| | |||| || | || ||| |||| | Sbjct 272 GATGAAACAGTATCTCGACCTGATGCGCCACGTGCGCGACAACGG-CACCTTCAAGCAGG 214 Query 196072 ACCGTACCGGCACGGGCACCATCTCTATTTTCGGGTATCAGATGCGTTTTGACCTGCGCA 196131 ||||||||||||| || ||| | | |||| | |||||||| || |||||| | Sbjct 213 ACCGTACCGGCACCGGTACCTACAGCGTGTTCGCCCACCAGATGCGCTTCGACCTGGCCG 154 Query 196132 AAGGGTTCCCGCTGGTCACCACCAAAAAGTTGCACCTGCGATCTATCATCCACGAACTGT 196191 | || || || ||||| |||||||| |||| ||||| || ||||| ||||| || Sbjct 153 ACGGTTTTCCCCTGGTGACCACCAAGAAGTGCCACCTCAAGTCGATCATTCACGAGTTGC 94 Query 196192 TGTGGTTCCTGAACGGCGACACCAACATCCAGTATCTGAAAGACAACAACGTCAGTATCT 196251 ||||||||||| | ||||||||||||||| |||| ||||| ||||| ||| | |||| Sbjct 93 TGTGGTTCCTGCAGGGCGACACCAACATCAAGTACCTGAAGGACAATGGCGTACGCATCT 34 Query 196252 GGGATGAGTGGGCAGATGAAGATGGCGATCT 196282 |||| |||||||| || || | ||||| || Sbjct 33 GGGACGAGTGGGCCGACGAGAACGGCGACCT 3 >seq10022 Length=1431 Score = 145 bits (160), Expect = 1e-29 Identities = 221/315 (70%), Gaps = 0/315 (0%) Strand=Plus/Minus Query 196748 ACTGTCCTGTCAGCTTTACCAGCGCAGTGCAGACGTCTTCCTCGGTGTCCCGTTCAACAT 196807 |||| ||| ||||| ||||||||||| || ||| ||||||| || || ||||||||||| Sbjct 576 ACTGAGCTGCCAGCTGTACCAGCGCAGCGCCGACATCTTCCTGGGCGTGCCGTTCAACAT 517 Query 196808 CGCTTCGTACGCTCTGTTGGTTCACATGGTGGCACAGCAGGTCAATATGGTGGCGGGTGA 196867 ||| ||||| ||| | ||||||||||| || ||| | | ||| | ||| || Sbjct 516 CGCCAGCTACGCCCTGCTCACGCACATGGTGGCGCAACAGTGCGACCTGGAAGTGGGCGA 457 Query 196868 TTTCGTCTGGACGGGCGGCGATACCCATCTGTACTCTAACCATCTGGAACAGGCCACGTT 196927 ||| ||||||| ||||||||| ||| | ||| |||||| || |||| || | Sbjct 456 CTTCATCTGGACCGGCGGCGATTGCCACATCTACAGCAACCATGCCGAGCAGGTGGCGCT 397 Query 196928 GCAGCTCTCCCGTGTACCGCATGATCTGCCTAAGCTCGTTATCAAACGTAAACCGGATTC 196987 |||||| || || | ||| | || | ||| ||| || || || | ||| Sbjct 396 GCAGCTGTCGCGCGCGCCGTTCGCGTACCCCACGCTGCGCATCCTGCGCAAGCCCGCTTC 337 Query 196988 CATTTTCGACTATAAGTTCGAAGATTTTGAAATCGTGGGTTACGAAAGCCACCCACCCAT 197047 ||| |||||||| ||||||| || || || | ||| |||||| |||||| |||| Sbjct 336 CATCTTCGACTACCAGTTCGAGGACTTCGAGGTGCAGGGCTACGAACACCACCCGGCCAT 277 Query 197048 TAAGGCACCGGTTGC 197062 ||||||||||| || Sbjct 276 CAAGGCACCGGTGGC 262 Score = 113 bits (124), Expect = 7e-20 Identities = 172/245 (70%), Gaps = 0/245 (0%) Strand=Plus/Minus Query 196065 AAAGCTGACCGTACCGGCACGGGCACCATCTCTATTTTCGGGTATCAGATGCGTTTTGAC 196124 |||| || || || ||||| ||||| | | ||||| | |||||||| || ||| Sbjct 1019 AAAGGCGATCGCACGGGCACCGGCACGAAAAGCGTCTTCGGCCACCAGATGCGGTTCGAC 960 Query 196125 CTGCGCAAAGGGTTCCCGCTGGTCACCACCAAAAAGTTGCACCTGCGATCTATCATCCAC 196184 ||| | |||| || |||||||| || ||||| || ||||||| ||| |||||| Sbjct 959 CTGAACGAAGGCTTTCCGCTGGTGACGACCAAGAAAGTGCACCTCAAATCCATCATCGTG 900 Query 196185 GAACTGTTGTGGTTCCTGAACGGCGACACCAACATCCAGTATCTGAAAGACAACAACGTC 196244 ||| || |||||||||| | |||| || ||| ||| | ||||| || ||| Sbjct 899 GAATTGCTGTGGTTCCTCACCGGCTCCAGTGACAACCACTGGCTGAAGGAACGGGGCGTG 840 Query 196245 AGTATCTGGGATGAGTGGGCAGATGAAGATGGCGATCTTGGCCCCGTCTACGGTAAGCAG 196304 | |||||||| || ||||| | || ||||| || |||||||||||||| |||| Sbjct 839 ACGATCTGGGACGAATGGGCGCGCGCGGACGGCGACCTGGGCCCCGTCTACGGCGTGCAG 780 Query 196305 TGGCG 196309 ||||| Sbjct 779 TGGCG 775 >seq776 Length=11329 Score = 138 bits (152), Expect = 2e-27 Identities = 174/239 (73%), Gaps = 0/239 (0%) Strand=Plus/Plus Query 196071 GACCGTACCGGCACGGGCACCATCTCTATTTTCGGGTATCAGATGCGTTTTGACCTGCGC 196130 |||||||||||||||||||| | | ||||| | |||||||| || |||||| | Sbjct 10119 GACCGTACCGGCACGGGCACGCGCAGCGTGTTCGGCCACCAGATGCGCTTCGACCTGTCC 10178 Query 196131 AAAGGGTTCCCGCTGGTCACCACCAAAAAGTTGCACCTGCGATCTATCATCCACGAACTG 196190 |||| || ||||||||||||||||| ||| ||||||| || ||||||| |||||| Sbjct 10179 GAAGGCTTTCCGCTGGTCACCACCAAGAAGGTGCACCTCAAGTCCATCATCCTGGAACTG 10238 Query 196191 TTGTGGTTCCTGAACGGCGACACCAACATCCAGTATCTGAAAGACAACAACGTCAGTATC 196250 ||||||||||| |||||||| ||| | | | ||| | || | | || ||| Sbjct 10239 CTGTGGTTCCTGCGCGGCGACAGCAATGTGCGCTGGCTGCAGGAGCGCGGCTGCACCATC 10298 Query 196251 TGGGATGAGTGGGCAGATGAAGATGGCGATCTTGGCCCCGTCTACGGTAAGCAGTGGCG 196309 ||||| || ||||| || || ||||| || ||||| ||||| || ||| ||||| Sbjct 10299 TGGGACGAATGGGCCCGCGAGGACGGCGACCTGGGCCCGGTCTATGGCGTGCAATGGCG 10357 Score = 95.1 bits (104), Expect = 2e-14 Identities = 102/135 (76%), Gaps = 0/135 (0%) Strand=Plus/Plus Query 196754 CTGTCAGCTTTACCAGCGCAGTGCAGACGTCTTCCTCGGTGTCCCGTTCAACATCGCTTC 196813 ||| ||||| ||||||||||| || ||| ||||||| || || || ||||||||||| Sbjct 10541 CTGCCAGCTATACCAGCGCAGCGCGGACATCTTCCTGGGCGTTCCCTTCAACATCGCCAG 10600 Query 196814 GTACGCTCTGTTGGTTCACATGGTGGCACAGCAGGTCAATATGGTGGCGGGTGATTTCGT 196873 ||||| ||| || |||||| |||| ||||| | | || || ||| || ||||| Sbjct 10601 CTACGCGCTGCTGACCCACATGCTGGCCCAGCAATGCGACCTGCAGGTGGGCGACTTCGT 10660 Query 196874 CTGGACGGGCGGCGA 196888 |||||| || ||||| Sbjct 10661 CTGGACCGGTGGCGA 10675 >seq10355 Length=1388 Score = 120 bits (132), Expect = 5e-22 Identities = 113/144 (78%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 196071 GACCGTACCGGCACGGGCACCATCTCTATTTTCGGGTATCAGATGCGTTTTGACCTGCGC 196130 || || ||||| |||||||| |||| | ||||| || ||||||||||| || || Sbjct 1245 GATCGCACCGGTACGGGCACGCGCTCTGTCTTCGGCTACCAGATGCGTTTCGATCTTTCA 1304 Query 196131 AAAGGGTTCCCGCTGGTCACCACCAAAAAGTTGCACCTGCGATCTATCATCCACGAACTG 196190 |||| |||||| || | |||||||| ||| | || ||||| || |||||||| || ||| Sbjct 1305 GAAGGCTTCCCGGTGCTGACCACCAAGAAGCTTCATCTGCGCTCCATCATCCATGAGCTG 1364 Query 196191 TTGTGGTTCCTGAACGGCGACACC 196214 ||||||||||||| ||||||||| Sbjct 1365 CTGTGGTTCCTGAAGGGCGACACC 1388 >seq11529 Length=1246 Score = 102 bits (112), Expect = 1e-16 Identities = 70/79 (89%), Gaps = 0/79 (0%) Strand=Plus/Plus Query 5487 CTCTGTAGTTCAGTTGGTAGAACGGTGGACTGTTAATCCATATGTCGCAGGTTCGAGTCC 5546 |||||||||||||| |||||||||| ||||||||||||| |||||| | ||||||||||| Sbjct 391 CTCTGTAGTTCAGTCGGTAGAACGGCGGACTGTTAATCCGTATGTCACTGGTTCGAGTCC 450 Query 5547 TGCCAGAGTCGCCACATTT 5565 | ||||| ||||||||| Sbjct 451 AGTCAGAGGAGCCACATTT 469 >seq3205 Length=3996 Score = 96.9 bits (106), Expect = 5e-15 Identities = 143/203 (70%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 196062 GAGAAAGCTGACCGTACCGGCACGGGCACCATCTCTATTTTCGGGTATCAGATGCGTTTT 196121 || |||| |||||||| ||||| || ||| ||| | || || |||| ||||||||| Sbjct 2817 GACAAAGGCGACCGTACAGGCACAGGAACCCGTTCTGTATTTGGTCATCAAATGCGTTTT 2758 Query 196122 GACCTGCGCAAAGGGTTCCCGCTGGTCACCACCAAAAAGTTGCACCTGCGATCTATCATC 196181 || || ||||| || || | ||||||| ||||| | ||| | || ||||| | Sbjct 2757 GATCTCTCTAAAGGTTTTCCTTTACTCACCACAAAAAAAGTTCACTTCCGTTCTATTGTG 2698 Query 196182 CACGAACTGTTGTGGTTCCTGAACGGCGACACCAACATCCAGTATCTGAAAGACAACAAC 196241 || | | ||||| | || |||||||||||| |||| ||||| ||||| || || Sbjct 2697 ATTGAGTTACTTTGGTTTTTAAAAGGCGACACCAACGTCCAATATCTAAAAGATAATAAA 2638 Query 196242 GTCAGTATCTGGGATGAGTGGGC 196264 || || |||||||| ||||| Sbjct 2637 GTATCAATTTGGGATGAATGGGC 2615 >seq32881 Length=284 Score = 89.7 bits (98), Expect = 8e-13 Identities = 102/137 (74%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 196749 CTGTCCTGTCAGCTTTACCAGCGCAGTGCAGACGTCTTCCTCGGTGTCCCGTTCAACATC 196808 ||||| || ||||| |||||||||||||| ||| |||| || || || ||||||||||| Sbjct 137 CTGTCGTGCCAGCTGTACCAGCGCAGTGCGGACATCTTTCTGGGCGTGCCGTTCAACATT 78 Query 196809 GCTTCGTACGCTCTGTTGGTTCACATGGTGGCACAGCAGGTCAATATGGTGGCGGGTGAT 196868 || ||||| ||| || ||||||||||| |||||| | | | | || || Sbjct 77 GCGAGCTACGCCCTGCTGACGCACATGGTGGCGCAGCAGTGCGACCTTCAAGTTGGCGAC 18 Query 196869 TTCGTCTGGACGGGCGG 196885 ||| ||||||| ||||| Sbjct 17 TTCATCTGGACCGGCGG 1 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 769965000655240