Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudoperonospora_20cubensis_20[genbank_20GCA_5F000252605.1_202012- 03-13] 35,539 sequences; 64,332,776 total letters Query= NC_031129.1 Length=103445 Score E Sequences producing significant alignments: (Bits) Value seq20301 376 2e-99 seq15573 214 1e-50 seq4487 138 7e-28 seq9150 109 4e-19 seq29522 107 1e-18 seq7683 102 5e-17 seq1170 86.0 4e-12 >seq20301 Length=662 Score = 376 bits (416), Expect = 2e-99 Identities = 421/563 (75%), Gaps = 0/563 (0%) Strand=Plus/Minus Query 96695 CCAGCATAGTTATCAAACCGTGAGTATTGGCCGTTAAAAGCCAATCTCACCGTGCCAATT 96754 || |||||||| || || ||||| ||||||||||||| | || | |||||| || ||| Sbjct 563 CCCGCATAGTTGTCGAAGCGTGACCATTGGCCGTTAAAGGTCAGACGCACCGTACCGATT 504 Query 96755 GGGCCATTTCGTTGCTTTCCGATAATTACCTCGGCAATGCCCTTCATTTCGCTATCCGGG 96814 ||||| || || ||||| || ||||| | || || ||||| |||| ||||| | | | Sbjct 503 GGGCCGTTACGCTGCTTACCAATAATAATTTCTGCGATGCCTTTCAGGTCGCTGTTCTCG 444 Query 96815 TGATAAACTTCGTCGCGATACAAAAACATGATCAGGTCTGCGTCCTGCTCAATTGCTCCT 96874 ||||| || || || ||||| | |||||||| | ||| || |||||||| || | || Sbjct 443 TGATAGACCTCATCACGATAGATGAACATGATTAAGTCGGCATCCTGCTCGATGGAGCCC 384 Query 96875 GATTCACGTAAATCTGAATTTACCGGTCGTTTGTCCGCACGCTGTTCAAGCGATCGATTA 96934 |||||||| | ||| || || ||||| || ||||| |||||||| || || || || ||| Sbjct 383 GATTCACGCAGATCGGAGTTGACCGGACGCTTGTCGGCACGCTGCTCCAGGGAGCGGTTA 324 Query 96935 AGTTGTGACAATGCCACCACCGGTACTTGTAATTCCTTCGCCAACGCCTTCAGTGAGCGA 96994 || || |||| ||||||||||| || || || || ||||||| || ||||| ||||| Sbjct 323 AGCTGCGACAGCGCCACCACCGGCACCTGCAACTCTTTCGCCAGTGCTTTCAGCGAGCGG 264 Query 96995 GAAATCTCGGCAATTTCCAGCGTTCGGTTATCTTGCAGCTCCGGGACGCGCATAAGTTGC 97054 || || |||||||||||||| || ||||| || |||| || |||||||| || || Sbjct 263 GAGATTTCGGCAATTTCCAGAGTACGGTTGTCCGACAGCGATGGAACGCGCATCAGCTGG 204 Query 97055 AGGTAGTCGATCATAATCATGCTCAAACCACCATTTTCTTTATAAACACGACGAGCGCGG 97114 |||||||||||||| |||| || | || || | || | || || |||||| Sbjct 203 AGGTAGTCGATCATGATCAGGCCAATGCCGCCGTGCTCGCGGGCGATTCGGCGCGCGCGG 144 Query 97115 GAACGTAGCTCTGTCGGCGTCAGGGCGCTTGAGTCATCAATAAAAATATTCTGCTTGTCC 97174 || || | || |||||||||||| || |||||||| ||| | || ||| | || ||| Sbjct 143 GAGCGCACTTCCGTCGGCGTCAGGCCGGAGGAGTCATCGATATAGATGTTCCGTTTTTCC 84 Query 97175 AACAGAATACCCATTGCGCCAGAAACCCGCGCCCAATCCTCGTCGTTAAGTTGCCCTGTT 97234 | |||||||||||| | ||| || | ||||||||| |||||||||| || || || || Sbjct 83 AGCAGAATACCCATGGTGCCGGAGATCCGCGCCCAGTCCTCGTCGTCCAGCTGGCCGGTA 24 Query 97235 CGAATACGAGTCTGATCAACGCG 97257 ||||| || ||||| || ||||| Sbjct 23 CGAATGCGGGTCTGGTCCACGCG 1 >seq15573 Length=905 Score = 214 bits (236), Expect = 1e-50 Identities = 277/378 (73%), Gaps = 5/378 (1%) Strand=Plus/Plus Query 96702 AGTTATCAAACCGTGAGTATTGGCCGTTAAAAGCCAATCTCACCGTGCCAATTGGGCCAT 96761 |||| || ||||| | ||| | |||| |||| ||||| | ||| || || ||||| | Sbjct 223 AGTTCTCGAACCGGGTGTACTTGCCGATAAACGCCAAACGCACGAAACCGATGGGGCCGT 282 Query 96762 TTCGTTGCTTTCCGATAATTACCTCGGCAATGCCCTTCATTTCGCTATCCGGGTGATAAA 96821 | || || || ||||| || | || || | |||||| ||| | || ||||| || | Sbjct 283 TACGCTGTTTGCCGATGATGATTTCCGCCACGCCCTTGTGCTCGGTCTCGGGGTGGTACA 342 Query 96822 CTTCGTCGCGATACAAAAACATGATCAGGTCTGCGTCCTGCTCAATTGCTCCTGATTCAC 96881 | |||||||| |||| |||||||||| ||| ||||||||||| ||||| || ||||||| Sbjct 343 CCTCGTCGCGGTACACGAACATGATCACGTCGGCGTCCTGCTCGATTGCACCAGATTCAC 402 Query 96882 GTAAATCTGAATTTACCGGTCGTTTGTCCGCACGCTGTTCAAGCGATCGATTAAGTTGTG 96941 | || || || || ||||| ||||||| || ||||| || | ||| || || || || | Sbjct 403 GCAAGTCGGAGTTCACCGGGCGTTTGTTCGGGCGCTGCTCCAACGAGCGGTTCAGCTGCG 462 Query 96942 ACAATGCCACCACC-GGTACTTGTAATTCCTTCGCCAACGCCTTCAGTGAGCGAGAAATC 97000 | | || | ||| || | ||| ||||| || |||| ||||| || ||||| |||||| Sbjct 463 AAAGGGCAATGACCGGGCAGTTG-AATTCTTTGGCCAGGGCCTTGAGCGAGCGGGAAATC 521 Query 97001 TCGGCAATTTCCAGCGTTCGGTTAT--CTTGCAG-CTCCGGGACGCGCATAAGTTGCAGG 97057 |||| |||||| || ||||| | | || | | |||||| |||| || |||||| Sbjct 522 TCGGAAATTTCGTTGGTACGGTTGTCACCGGCCGACCCCGGGATCTGCATCAGCTGCAGG 581 Query 97058 TAGTCGATCATAATCATG 97075 ||||||| ||| |||||| Sbjct 582 TAGTCGACCATGATCATG 599 >seq4487 Length=2993 Score = 138 bits (152), Expect = 7e-28 Identities = 228/326 (70%), Gaps = 5/326 (2%) Strand=Plus/Plus Query 96755 GGGCCATTTCGTTGCTTTCCGATAATTACCTCGGCAATGCCCTT---CATTTCGCTATCC 96811 |||||| || ||||| ||||| || | |||||| | |||||| | | | ||| Sbjct 235 GGGCCACCACGGTGCTTGCCGATGATGATCTCGGCCAGGCCCTTGTCCGGCGAGTTTTCC 294 Query 96812 GGGTGATAAACTTCGTCGCGATACAAAAACATGATCAGGTCTGCGTCCTGCTCAATTGCT 96871 || || |||||||| || | |||| ||||| ||| ||||||||||| ||||| Sbjct 295 TTGTTGTAGTAGTCGTCGCGGTAGATGAACACGATCATGTCCGCGTCCTGCTCGATTGCG 354 Query 96872 CCTGATTCACGTAAATCTGAATTTACCGGTCGTTTGTCCGCACGCTGTTCAAGCGATCGA 96931 || || || || | || | | ||||| || ||||| | |||| ||| ||||| || Sbjct 355 CCCGACTCGCGAAGGTCGGCCATCACCGGGCGCTTGTCGGTACGCGTTTCCAGCGAGCGG 414 Query 96932 TTAAGTTGTGACAATGCCACCACCGGTACTTGTAATTCCTTCGCCAACGCCTTCAGTGAG 96991 || || ||||||| || | |||||| || | |||||||| |||| |||||| || Sbjct 415 TTGAGCTGTGACAGCGCGATCACCGGCACATTCAATTCCTTGGCCAGGCCCTTCAACGAA 474 Query 96992 CGAGAAATCTCGGCAATTTCCAGCGTTCGGTTATC-TTGCAGCTCCGGGACGCGCATAAG 97050 || || ||||| | || || || ||||| || || || |||| |||| ||| || Sbjct 475 CGCGAGATCTCCGAGATCTCGGTCGCGCGGTTTTCGCTGTTGC-CCGGCACGCTCATCAG 533 Query 97051 TTGCAGGTAGTCGATCATAATCATGC 97076 |||||||||||||||| |||| || Sbjct 534 CTGCAGGTAGTCGATCACGATCAGGC 559 >seq9150 Length=1571 Score = 109 bits (120), Expect = 4e-19 Identities = 180/257 (70%), Gaps = 2/257 (1%) Strand=Plus/Minus Query 96824 TCGTCGCGATACAAAAACATGATCAGGTCTGCGTCCTGCTCAATTGCTCCTGATTCACGT 96883 |||||||| || | || | ||||| ||| ||||||||||| || || || ||||| || Sbjct 587 TCGTCGCGGTAGATGAAGACGATCATGTCGGCGTCCTGCTCGATGGCGCCCGATTCGCGA 528 Query 96884 AAATCTGAATTTACCGGTCGTTTGTCCGCACGCTGTTCAAGCGATCGATTAAGTTGTGAC 96943 | || | | ||||| || ||||| | |||| ||||||||| || || || || ||| Sbjct 527 AGGTCGGCCATCACCGGGCGCTTGTCGGTACGCGTTTCAAGCGAGCGGTTGAGCTGCGAC 468 Query 96944 AATGCCACCACCGGTACTTGTAATTCCTTCGCCAACGCCTTCAGTGAGCGAGAAATCTCG 97003 | || | |||||||| | | |||||| || | |||||| || || || ||||| Sbjct 467 AGCGCGATGACCGGTACGTTGAGTTCCTTTGCGAGGCCCTTCAACGAACGCGAGATCTCC 408 Query 97004 GCAATTTCCAGCGTTCGGTTATC-TTGCAGCTCCGGGACGCGCATAAGTTGCAGGTAGTC 97062 | || || | ||||| || || || |||| || ||| || ||||||||||| Sbjct 407 GAGATCTCGGTGGCGCGGTTCTCGCTGTTGC-CCGGCACCGACATCAGCTGCAGGTAGTC 349 Query 97063 GATCATAATCATGCTCA 97079 ||||| |||| || || Sbjct 348 GATCACGATCAGGCCCA 332 >seq29522 Length=371 Score = 107 bits (118), Expect = 1e-18 Identities = 73/82 (89%), Gaps = 0/82 (0%) Strand=Plus/Minus Query 98311 AAATATGGTGGCCCCTACCGGACTTGAACCGGTGACCGTGCGATTATGAGTCGCCAGCTC 98370 |||| ||||||||||| | ||||||||||| | |||| |||||||||||||||| |||| Sbjct 282 AAATTTGGTGGCCCCTGCTGGACTTGAACCAGCGACCAAGCGATTATGAGTCGCCTGCTC 223 Query 98371 TAACCACTGAGCTAAAGGGCCG 98392 ||||||||||||||| |||||| Sbjct 222 TAACCACTGAGCTAAGGGGCCG 201 >seq7683 Length=1870 Score = 102 bits (112), Expect = 5e-17 Identities = 229/338 (68%), Gaps = 16/338 (5%) Strand=Plus/Minus Query 96741 TCACCGTGCCAATTGGGCCATTTCGTTGCTTTCCGATAATTACCTCGGCAA---TGCCCT 96797 |||||||||| | ||||| || || ||||| ||||| || |||||||| | || || Sbjct 1747 TCACCGTGCCCGTCGGGCCGTTCCGCTGCTTGCCGATGATGACCTCGGCCACGTTGGGCT 1688 Query 96798 TCATTTCGCTATCCGGGTGATAAACTTCGTCGCGATACAAAAACATGATCAGGTCTGCGT 96857 | | | ||| || || |||||||| || | |||||||| | ||| || | Sbjct 1687 CCTTGGAG---TCCTTGTTGTAGTAGTCGTCGCGGTAGATGAACATGATGATGTCCGCAT 1631 Query 96858 CCTGCTCAATTGCTCCTGATTCACGTAAATCTGAATTTACCGGTCGTTTGTCCGCACGCT 96917 ||||||| || || || ||||| || | ||| || | | || || ||||| | |||| Sbjct 1630 CCTGCTCGATGGCGCCCGATTCGCGCAGATCGGACATCATGGGCCGCTTGTCGGTGCGCT 1571 Query 96918 GTTCAAGCGATCGATTAAGTTGTGACAATGCCACCACCGGTACTTGTAATTCCTTCGCCA 96977 |||| | ||| || || || || |||| || | |||||| || | |||||| |||| Sbjct 1570 GTTCCACCGAGCGGTTGAGCTGCGACAGCGCGATCACCGGGCACTGCAGTTCCTTGGCCA 1511 Query 96978 ACGCCTTCAGTGAGCGAGAAATCTCGGCAATTTCC--AGCGTTCGGTTATCT----TGCA 97031 | |||||| || || || ||| | | ||| |||| ||||| || ||| Sbjct 1510 GCATCTTCAGGCCCCGGGAGATTTCGCCCAGTTCGGTAGCG--CGGTTGTCCGCGCTGCC 1453 Query 97032 G-CTCCGG-GACGCGCATAAGTTGCAGGTAGTCGATCA 97067 | | |||| | | | ||| || ||||||||||||| || Sbjct 1452 GGCGCCGGAGCCACTCATCAGCTGCAGGTAGTCGACCA 1415 >seq1170 Length=8485 Score = 86.0 bits (94), Expect = 4e-12 Identities = 65/77 (84%), Gaps = 0/77 (0%) Strand=Plus/Minus Query 99543 CTGGTGCCGATTAACGGACTCGAACCGCTGACATCCTGCTTACAAGGCAGGCGCTCTACC 99602 ||||||||| || |||| |||||| | ||| | | ||||||||||| || |||||||| Sbjct 1332 CTGGTGCCGGTTGTCGGATTCGAACTGACGACCTACCGCTTACAAGGCGGGTGCTCTACC 1273 Query 99603 AACTGAGCTAAACCGGC 99619 ||||||||||||||||| Sbjct 1272 AACTGAGCTAAACCGGC 1256 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 330755877112474