Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudoperonospora_20cubensis_20[genbank_20GCA_5F000252605.1_202012- 03-13] 35,539 sequences; 64,332,776 total letters Query= NC_031224.1 Length=59443 Score E Sequences producing significant alignments: (Bits) Value seq776 165 3e-36 seq6884 149 2e-31 seq25603 120 1e-22 seq1969 93.3 2e-14 seq23650 84.2 8e-12 >seq776 Length=11329 Score = 165 bits (182), Expect = 3e-36 Identities = 354/523 (68%), Gaps = 16/523 (3%) Strand=Plus/Plus Query 51810 GGCTTCCCGCTCATCACCACCAAGAAGGTGCATTTC----CCATCAGTGGTCGGGGAGTT 51865 ||||| ||||| ||||||||||||||||||| || |||||| || ||| | Sbjct 10182 GGCTTTCCGCTGGTCACCACCAAGAAGGTGCACCTCAAGTCCATCA----TCCTGGAACT 10237 Query 51866 GCTGTGGTTGCTTTCGGGCTCTACGAACGTCAACGATCTCCATAAGTACGGCGTCAGCAT 51925 ||||||||| || ||| | || || | || || || |||| || ||| Sbjct 10238 GCTGTGGTTCCTGCGCGGCGACAGCAATGTGCGCTGGCTGCAGGAGCGCGGCTGCACCAT 10297 Query 51926 TTGGGACGAATGGGCGGATGAAAATGGTAACCTGGGTCCTGTGTATGGTAAGCAGTGGCG 51985 |||||||||||||| || | || ||||||| || || ||||| ||| ||||| Sbjct 10298 CTGGGACGAATGGGCCCGCGAGGACGGCGACCTGGGCCCGGTCTATGGCGTGCAATGGCG 10357 Query 51986 TAGTTGG--GATGCTGGT-GGCGGCAAGGTCATCGATCAGATCCATGAAGTCGTCAAATC 52042 | ||| || || || |||||| | |||||| |||||| ||||| ||||| Sbjct 10358 CAACTGGCCGACGCCGGACGGCGGCCA---CATCGACCAGATCGCCGAAGTGGTCAAGCA 10414 Query 52043 AATTAAGAACGATCCTGATAGTCGACGGCACATTGTCTCTGCTTGGAATGTGGGTGATTT 52102 | |||| | | || || || || || ||| ||| || ||||| |||| || | Sbjct 10415 GCTCAAGAGCAACCCGGACAGCCGCCGCATCATCGTCAGCGCCTGGAACGTGGCCGACCT 10474 Query 52103 GGATGATATGGCGTTGGCTCCCTGCCATACACTATTCCAATTCTATGTAGCTGAAGGTAA 52162 | | |||||| | |||||||| | | ||||| ||||| || || || || || Sbjct 10475 GCCGCAGATGGCGCTCATGCCCTGCCACGCCTTCTTCCAGTTCTACGTGGCCGACGGCAA 10534 Query 52163 GCTTTCGTGCCATTTGTATCAGCGGTCTGCCGACATGTTCTTGGGCGTTCCGTTTAACAT 52222 ||| ||||| | || ||||| || ||||| ||| |||||||||| || ||||| Sbjct 10535 GCTCAGCTGCCAGCTATACCAGCGCAGCGCGGACATCTTCCTGGGCGTTCCCTTCAACAT 10594 Query 52223 TGCCAGCTATTCCTTGCTGACGCATCTGATTGCTCGAGCAGTTGGCCTTG-ATGTTGGTG 52281 |||||||| | ||||||| || || | || | |||| | | | || | || || | Sbjct 10595 CGCCAGCTACGCGCTGCTGACCCACATGCTGGCCC-AGCAATGCGACCTGCAGGTGGGCG 10653 Query 52282 AATTCATTTGGACTGGTGGCGACGTCCATATCTACAACAACCA 52324 | ||| | ||||| ||||||||| ||| |||||||||||||| Sbjct 10654 ACTTCGTCTGGACCGGTGGCGACTGCCACATCTACAACAACCA 10696 >seq6884 Length=2068 Score = 149 bits (164), Expect = 2e-31 Identities = 295/437 (68%), Gaps = 0/437 (0%) Strand=Plus/Plus Query 51810 GGCTTCCCGCTCATCACCACCAAGAAGGTGCATTTCCCATCAGTGGTCGGGGAGTTGCTG 51869 ||||||||||| ||||||||||||| |||| | | || | || ||| ||||| Sbjct 1242 GGCTTCCCGCTGGTCACCACCAAGAAACTGCACCTGCGCTCGATCATCCACGAGCTGCTG 1301 Query 51870 TGGTTGCTTTCGGGCTCTACGAACGTCAACGATCTCCATAAGTACGGCGTCAGCATTTGG 51929 ||||| || |||| || ||| || | | ||| | | || |||||||| ||| Sbjct 1302 TGGTTCCTGAAGGGCGAAACCAACATCGCCTACCTCAAGGACAACAAGGTCAGCATCTGG 1361 Query 51930 GACGAATGGGCGGATGAAAATGGTAACCTGGGTCCTGTGTATGGTAAGCAGTGGCGTAGT 51989 ||||| ||||| || | ||||| | ||||| || ||||| || ||||||||||| ||| Sbjct 1362 GACGAGTGGGCTGACGCGAATGGCGAACTGGGGCCGGTGTACGGCAAGCAGTGGCGCAGT 1421 Query 51990 TGGGATGCTGGTGGCGGCAAGGTCATCGATCAGATCCATGAAGTCGTCAAATCAATTAAG 52049 ||||| | | | ||| ||| |||||| ||||| || | || | || ||| Sbjct 1422 TGGGAAGGCGTCGACGGAAAGACCATCGACCAGATGCAGTGGCTGGTGGACGAGATCAAG 1481 Query 52050 AACGATCCTGATAGTCGACGGCACATTGTCTCTGCTTGGAATGTGGGTGATTTGGATGAT 52109 | | || || || |||| | || || ||||| || | || || | Sbjct 1482 CGCAACCCGGACTCGCGCCGGCTGGTGATCAGCGCCTGGAACGTCGCCGAGCTGCCGAAG 1541 Query 52110 ATGGCGTTGGCTCCCTGCCATACACTATTCCAATTCTATGTAGCTGAAGGTAAGCTTTCG 52169 ||||||||| || |||||| | || ||||| ||||| || | || || ||||| Sbjct 1542 ATGGCGTTGATGCCGTGCCATTCGCTGTTCCAGTTCTACGTGGTCGACGGCAAGCTCAGC 1601 Query 52170 TGCCATTTGTATCAGCGGTCTGCCGACATGTTCTTGGGCGTTCCGTTTAACATTGCCAGC 52229 ||||| | |||||||| | |||||| ||| | ||||| ||||| ||||| |||||| Sbjct 1602 TGCCAGCTCTATCAGCGCAGCGGCGACATCTTCCTCGGCGTGCCGTTCAACATCGCCAGC 1661 Query 52230 TATTCCTTGCTGACGCA 52246 || | |||||||||| Sbjct 1662 TACGCGCTGCTGACGCA 1678 >seq25603 Length=477 Score = 120 bits (132), Expect = 1e-22 Identities = 159/218 (73%), Gaps = 2/218 (1%) Strand=Plus/Plus Query 52109 TATGGCGTTGGCTCCCTGCCATACACTATTCCAATTCTATGTAGCTGAAGGTAAGCTTTC 52168 ||||||||||||| | |||||||| || ||||| || ||||| || || || || | || Sbjct 185 TATGGCGTTGGCTGCTTGCCATACCCTGTTCCAGTTTTATGTTGCCGATGGCAAATTGTC 244 Query 52169 GTGCCATTTGTATCAGCGGTCTGCCGACATGTTCTTGGGCGTTCCGTTTAACATTGCCAG 52228 ||||| | || ||||| ||| || | ||| | |||||||||||||| || ||||| Sbjct 245 TTGCCAGCTTTACCAGCGCAGTGCGGATCTATTCCTTGGCGTTCCGTTTAATATCGCCAG 304 Query 52229 CTATTCCTTGCTGACGCATCTGATTGCTCGAGCAGT-TGGCCTTGATGTTGGTGAATTCA 52287 ||| | ||||||| ||| ||||||| | |||| | || || || |||||||| ||| Sbjct 305 CTACGCGCTGCTGACCCATATGATTGC-CCAGCAATGTGATCTGGACGTTGGTGATTTCG 363 Query 52288 TTTGGACTGGTGGCGACGTCCATATCTACAACAACCAT 52325 | || |||||| ||| | |||||||| ||| Sbjct 364 TACATACCTTTGGCGATTGCCACCTGTACAACAATCAT 401 >seq1969 Length=5862 Score = 93.3 bits (102), Expect = 2e-14 Identities = 104/139 (75%), Gaps = 0/139 (0%) Strand=Plus/Minus Query 52107 GATATGGCGTTGGCTCCCTGCCATACACTATTCCAATTCTATGTAGCTGAAGGTAAGCTT 52166 || |||||| | | || ||||| | | | || ||||| ||||| || ||| |||| Sbjct 2379 GAAATGGCGCTACCACCGTGCCACATGTTCTGTCAGTTCTACGTAGCAGATGGTGAGCTG 2320 Query 52167 TCGTGCCATTTGTATCAGCGGTCTGCCGACATGTTCTTGGGCGTTCCGTTTAACATTGCC 52226 |||||||| |||| |||||||| ||||||||| | ||||| || |||||||||||| Sbjct 2319 TCGTGCCAGATGTACCAGCGGTCAGCCGACATGGGACTTGGCGTGCCATTTAACATTGCC 2260 Query 52227 AGCTATTCCTTGCTGACGC 52245 ||||| | | ||||||| Sbjct 2259 AGCTACGCGCTTCTGACGC 2241 >seq23650 Length=538 Score = 84.2 bits (92), Expect = 8e-12 Identities = 60/69 (87%), Gaps = 0/69 (0%) Strand=Plus/Minus Query 51917 CGTCAGCATTTGGGACGAATGGGCGGATGAAAATGGTAACCTGGGTCCTGTGTATGGTAA 51976 |||| ||||||||||||||||||||||||||| || | ||||| || || |||||||| Sbjct 89 CGTCTCCATTTGGGACGAATGGGCGGATGAAAACGGCGATCTGGGCCCAGTTTATGGTAA 30 Query 51977 GCAGTGGCG 51985 ||||||||| Sbjct 29 GCAGTGGCG 21 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 190015774616790