Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudoperonospora_20cubensis_20[genbank_20GCA_5F000252605.1_202012- 03-13] 35,539 sequences; 64,332,776 total letters Query= NC_031235.1 Length=194437 Score E Sequences producing significant alignments: (Bits) Value seq16212 95.1 2e-14 seq14841 87.8 2e-12 seq4020 87.8 2e-12 seq6689 82.4 9e-11 >seq16212 Length=864 Score = 95.1 bits (104), Expect = 2e-14 Identities = 66/75 (88%), Gaps = 0/75 (0%) Strand=Plus/Minus Query 19748 TTCCTCTATAGCTCAGTCGGTAGAGCGAGTGACTGTTAATCACTATGTCCCTGGTTCGAG 19807 |||||| |||||||||| ||||||||| ||||||||||| || |||||||||||||| Sbjct 169 TTCCTCAATAGCTCAGTTGGTAGAGCGCCGGACTGTTAATCCGTAGGTCCCTGGTTCGAG 110 Query 19808 CCCAGGTGGAGGAGC 19822 ||||||| ||||||| Sbjct 109 CCCAGGTTGAGGAGC 95 >seq14841 Length=953 Score = 87.8 bits (96), Expect = 2e-12 Identities = 54/58 (93%), Gaps = 0/58 (0%) Strand=Plus/Plus Query 165787 TAGCTCAGTTGGATAGAGCAACTGCCTTCTAAGCAGTCGGTCACAGGTTCGAGTCCTG 165844 ||||||| |||||||||||||||||||||||||||| |||| ||||||||||||||| Sbjct 30 TAGCTCAACTGGATAGAGCAACTGCCTTCTAAGCAGTAGGTCGCAGGTTCGAGTCCTG 87 >seq4020 Length=3293 Score = 87.8 bits (96), Expect = 2e-12 Identities = 65/76 (86%), Gaps = 0/76 (0%) Strand=Plus/Plus Query 19747 ATTCCTCTATAGCTCAGTCGGTAGAGCGAGTGACTGTTAATCACTATGTCCCTGGTTCGA 19806 |||| | ||||||||||||||||||||| ||||||||||| | ||||||||||||| Sbjct 2843 ATTCTCCAATAGCTCAGTCGGTAGAGCGACGGACTGTTAATCCGCAGGTCCCTGGTTCGA 2902 Query 19807 GCCCAGGTGGAGGAGC 19822 |||||||||| |||| Sbjct 2903 GCCCAGGTGGGAGAGC 2918 >seq6689 Length=2121 Score = 82.4 bits (90), Expect = 9e-11 Identities = 56/63 (89%), Gaps = 0/63 (0%) Strand=Plus/Plus Query 165862 GCTTAACTCAGCGGTAGAGTGTCTCCTTTACACGGAGGGTGTCGGCGGTTCGAATCCGTC 165921 ||||| ||||||||||||| ||||||||||||||||| | ||||| |||||||| || || Sbjct 1975 GCTTAGCTCAGCGGTAGAGCGTCTCCTTTACACGGAGAGGGTCGGGGGTTCGAAACCCTC 2034 Query 165922 AGC 165924 ||| Sbjct 2035 AGC 2037 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 621794053000680