Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudoperonospora_20cubensis_20[genbank_20GCA_5F000252605.1_202012- 03-13] 35,539 sequences; 64,332,776 total letters Query= NC_031242.1 Length=174307 Score E Sequences producing significant alignments: (Bits) Value seq14841 87.8 2e-12 seq6689 86.0 7e-12 >seq14841 Length=953 Score = 87.8 bits (96), Expect = 2e-12 Identities = 54/58 (93%), Gaps = 0/58 (0%) Strand=Plus/Plus Query 159830 TAGCTCAGTTGGATAGAGCAACTGCCTTCTAAGCAGTCGGTCACAGGTTCGAGTCCTG 159887 ||||||| |||||||||||||||||||||||||||| |||| ||||||||||||||| Sbjct 30 TAGCTCAACTGGATAGAGCAACTGCCTTCTAAGCAGTAGGTCGCAGGTTCGAGTCCTG 87 >seq6689 Length=2121 Score = 86.0 bits (94), Expect = 7e-12 Identities = 64/75 (85%), Gaps = 0/75 (0%) Strand=Plus/Plus Query 13605 CTTGGGCGATTAACTCAGCGGTAGAGTGCCTCCTTTACACGGAGTAGGTCGGGGGTTCGA 13664 || ||| | ||| ||||||||||||| | ||||||||||||||| |||||||||||||| Sbjct 1968 CTGGGGTGCTTAGCTCAGCGGTAGAGCGTCTCCTTTACACGGAGAGGGTCGGGGGTTCGA 2027 Query 13665 ATCCCTCATCGCCCA 13679 | |||||| | |||| Sbjct 2028 AACCCTCAGCACCCA 2042 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 557406669003480