Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudoperonospora_20cubensis_20[genbank_20GCA_5F000252605.1_202012- 03-13] 35,539 sequences; 64,332,776 total letters Query= NC_031249.1 Length=50127 Score E Sequences producing significant alignments: (Bits) Value seq12370 87.8 6e-13 >seq12370 Length=1162 Score = 87.8 bits (96), Expect = 6e-13 Identities = 120/165 (73%), Gaps = 2/165 (1%) Strand=Plus/Plus Query 42717 CCGCCCTACTTCGGTCTGCGCGACTACGGCGAGGACGGCCAGTACGGGTTGGAGGCCTCC 42776 ||||| || ||||| || ||||||||||||| || || ||| |||| ||||| | || Sbjct 14 CCGCCGTATTTCGGCCTCCGCGACTACGGCGTCGATGGACAGATCGGGCTGGAGCCATCG 73 Query 42777 CCAGCCGAATACGTCGAAACGATGCGAGCA-CTGTTCGCCGAACTGCGCCGCGTGCTCGC 42835 |||| |||| |||||| | || | ||| ||||| || | |||||||| || Sbjct 74 CCAGAGGAATTCGTCGACGCCCTG-GTGCAGGTGTTCCGGGAGGTTCGCCGCGTCCTGCG 132 Query 42836 CGACGACGGAACCCTCTGGCTCAACTTGGGTGACAGCTACTCAGG 42880 || ||||| ||| | ||||| ||| | || ||||||||| |||| Sbjct 133 GGATGACGGCACCGTGTGGCTGAACCTCGGCGACAGCTACGCAGG 177 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 160217155707102