Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudoperonospora_20cubensis_20[genbank_20GCA_5F000252605.1_202012- 03-13] 35,539 sequences; 64,332,776 total letters Query= NC_031280.1 Length=104906 Score E Sequences producing significant alignments: (Bits) Value seq3205 147 1e-30 >seq3205 Length=3996 Score = 147 bits (162), Expect = 1e-30 Identities = 227/324 (70%), Gaps = 0/324 (0%) Strand=Plus/Minus Query 70268 GAGGGTATTGATCAGATCGAGTGGGTAATTAATGAGATTAAAACTAATCCAAATAGCCGT 70327 || ||| |||| || || | ||| |||||||||| || ||||| ||||| ||| || Sbjct 2499 GATGGTTTTGACCAAATTAAATGGTTAATTAATGAAATCAAAACCAATCCGAATTCACGC 2440 Query 70328 CGTATGATTGTCACGGGGTGGAACCCTCATGAGATTGAAGATGTAGACCTTCCACCATGT 70387 ||| | ||| | | || ||||| || |||| || | | || | | ||||| || Sbjct 2439 CGTTTAATTATTTCAGGCTGGAATCCAAATGAAGCTGGACAAGTGGCTTTACCACCTTGC 2380 Query 70388 CATACACTATTCCAATTCTTTGTGGAAGATGGTAAGCTTTCTTGCCAGCTATATCAACGT 70447 || || || || ||||| || || ||||| || | || |||||||| ||||||||| Sbjct 2379 CACACGCTTTTTCAATTTTTCGTACAAGATAACAAATTGTCATGCCAGCTTTATCAACGT 2320 Query 70448 AGTGCTGACATTTTACTTGGTGTGCCATTCAATATTGCATCATATGCCTTACTTACACAT 70507 ||||| ||| | || | || || || || || ||||| ||||| ||||| || || Sbjct 2319 AGTGCAGACGTGTTTTTAGGGGTTCCTTTTAACATTGCCAGTTATGCTTTACTCACTCAC 2260 Query 70508 CTTATTGCTGCTGAGTGTGGGTTAGGTGTTGGTGAGTTTGTTTGGACTGGTGGTGATATC 70567 | |||||| | ||| || ||||| || ||||| ||||||||||| || ||||||| Sbjct 2259 ATGATTGCTCAAGTGTGCGGTTTAGGAGTCGGTGACTTTGTTTGGACAGGCGGTGATACG 2200 Query 70568 CATGTGTACTCGAATCAATATGAA 70591 ||| | || ||||| | |||| Sbjct 2199 CATCTTTATGTCAATCATTTTGAA 2176 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 335429052135793