Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudoperonospora_20cubensis_20[genbank_20GCA_5F000252605.1_202012- 03-13] 35,539 sequences; 64,332,776 total letters Query= NC_031935.1 Length=186386 Score E Sequences producing significant alignments: (Bits) Value seq25200 89.7 6e-13 seq24155 89.7 6e-13 seq14849 89.7 6e-13 seq14573 89.7 6e-13 seq35467 87.8 2e-12 seq35445 87.8 2e-12 seq14841 86.0 7e-12 seq14778 86.0 7e-12 seq19254 84.2 3e-11 seq5180 82.4 9e-11 >seq25200 Length=489 Score = 89.7 bits (98), Expect = 6e-13 Identities = 65/74 (88%), Gaps = 1/74 (1%) Strand=Plus/Minus Query 17859 GGGGAATTAGCTCAGTTGG-TAGAGCGCCTGCTTTGCAAGCAGGATGTCAGCGGTTCGAG 17917 |||| |||||||||| ||| |||||||||||| ||||| |||||| |||| |||||||| Sbjct 219 GGGGGATTAGCTCAGCTGGCTAGAGCGCCTGCCTTGCACGCAGGAGGTCATCGGTTCGAC 160 Query 17918 TCCGCTATTCTCCA 17931 |||| ||||||||| Sbjct 159 TCCGATATTCTCCA 146 >seq24155 Length=522 Score = 89.7 bits (98), Expect = 6e-13 Identities = 65/74 (88%), Gaps = 1/74 (1%) Strand=Plus/Minus Query 17859 GGGGAATTAGCTCAGTTGG-TAGAGCGCCTGCTTTGCAAGCAGGATGTCAGCGGTTCGAG 17917 |||| |||||||||| ||| |||||||||||| ||||| |||||| |||| |||||||| Sbjct 224 GGGGGATTAGCTCAGCTGGCTAGAGCGCCTGCCTTGCACGCAGGAGGTCATCGGTTCGAC 165 Query 17918 TCCGCTATTCTCCA 17931 |||| ||||||||| Sbjct 164 TCCGATATTCTCCA 151 >seq14849 Length=952 Score = 89.7 bits (98), Expect = 6e-13 Identities = 65/74 (88%), Gaps = 1/74 (1%) Strand=Plus/Plus Query 17859 GGGGAATTAGCTCAGTTGG-TAGAGCGCCTGCTTTGCAAGCAGGATGTCAGCGGTTCGAG 17917 |||| |||||||||| ||| |||||||||||| ||||| |||||| |||| |||||||| Sbjct 332 GGGGGATTAGCTCAGCTGGCTAGAGCGCCTGCCTTGCACGCAGGAGGTCAACGGTTCGAC 391 Query 17918 TCCGCTATTCTCCA 17931 |||| ||||||||| Sbjct 392 TCCGTTATTCTCCA 405 >seq14573 Length=973 Score = 89.7 bits (98), Expect = 6e-13 Identities = 65/74 (88%), Gaps = 1/74 (1%) Strand=Plus/Minus Query 17859 GGGGAATTAGCTCAGTTGG-TAGAGCGCCTGCTTTGCAAGCAGGATGTCAGCGGTTCGAG 17917 |||| |||||||||| ||| |||||||||||| ||||| |||||| |||| |||||||| Sbjct 652 GGGGGATTAGCTCAGCTGGCTAGAGCGCCTGCCTTGCACGCAGGAGGTCAACGGTTCGAC 593 Query 17918 TCCGCTATTCTCCA 17931 |||| ||||||||| Sbjct 592 TCCGTTATTCTCCA 579 >seq35467 Length=503 Score = 87.8 bits (96), Expect = 2e-12 Identities = 53/56 (95%), Gaps = 0/56 (0%) Strand=Plus/Minus Query 17866 TAGCTCAGTTGGTAGAGCGCCTGCTTTGCAAGCAGGATGTCAGCGGTTCGAGTCCG 17921 ||||||||||||||||||||||||||||||||||||||||| |||||||| |||| Sbjct 175 TAGCTCAGTTGGTAGAGCGCCTGCTTTGCAAGCAGGATGTCGTCGGTTCGAATCCG 120 >seq35445 Length=682 Score = 87.8 bits (96), Expect = 2e-12 Identities = 65/75 (87%), Gaps = 1/75 (1%) Strand=Plus/Plus Query 17858 AGGGGAATTAGCTCAGTTGG-TAGAGCGCCTGCTTTGCAAGCAGGATGTCAGCGGTTCGA 17916 |||||||||||||||| ||| |||||||||||| ||||| |||||| |||| ||||||| Sbjct 357 AGGGGAATTAGCTCAGCTGGCTAGAGCGCCTGCCTTGCACGCAGGAGGTCAAGGGTTCGA 416 Query 17917 GTCCGCTATTCTCCA 17931 ||| ||||||||| Sbjct 417 CTCCCTTATTCTCCA 431 >seq14841 Length=953 Score = 86.0 bits (94), Expect = 7e-12 Identities = 61/70 (87%), Gaps = 0/70 (0%) Strand=Plus/Plus Query 157427 TAGCTCAGCTGGATAGAGCAACTGCCTTCTAAGCAGTCGGTCGCTGGTTCGAATCCAGCC 157486 ||||||| ||||||||||||||||||||||||||||| |||||| ||||||| ||| || Sbjct 30 TAGCTCAACTGGATAGAGCAACTGCCTTCTAAGCAGTAGGTCGCAGGTTCGAGTCCTGCA 89 Query 157487 TGAGACGCCA 157496 | | ||||| Sbjct 90 GGGGTCGCCA 99 >seq14778 Length=957 Score = 86.0 bits (94), Expect = 7e-12 Identities = 64/74 (86%), Gaps = 1/74 (1%) Strand=Plus/Plus Query 17859 GGGGAATTAGCTCAGTTGG-TAGAGCGCCTGCTTTGCAAGCAGGATGTCAGCGGTTCGAG 17917 ||||||||||||||| ||| |||||| ||||| ||||| ||||| |||| |||||||| Sbjct 1 GGGGAATTAGCTCAGCTGGCTAGAGCACCTGCCTTGCACGCAGGGGGTCAACGGTTCGAA 60 Query 17918 TCCGCTATTCTCCA 17931 |||| ||||||||| Sbjct 61 TCCGTTATTCTCCA 74 >seq19254 Length=709 Score = 84.2 bits (92), Expect = 3e-11 Identities = 69/82 (84%), Gaps = 3/82 (4%) Strand=Plus/Minus Query 18376 TGTCCGAGTGGTTAATGGAGGCGGACTGTAAATCCGCTGGCTCTGCCTACGGGGGTTCAA 18435 || |||||||||||| || | ||||||||||||||| |||||| ||||||| ||||||| Sbjct 511 TGCCCGAGTGGTTAAAGGGGACGGACTGTAAATCCGTTGGCTCAGCCTACGTTGGTTCAA 452 Query 18436 ATCC--CTCCCTGC-CCATACT 18454 |||| |||||| | |||| || Sbjct 451 ATCCAACTCCCTCCACCATTCT 430 >seq5180 Length=2659 Score = 82.4 bits (90), Expect = 9e-11 Identities = 71/87 (82%), Gaps = 2/87 (2%) Strand=Plus/Minus Query 158118 GGAAAGGTGGTCGAGTGGTTGATGGCTCTGGTCTTGAAAACCAGCGAA--GTGAGAGCTT 158175 ||| || ||| |||| |||| | ||| | ||||||||||||| ||||| || | | ||| Sbjct 1043 GGAGAGATGGCCGAGCGGTTTAAGGCACCGGTCTTGAAAACCGGCGAAGGGTCAAACCTT 984 Query 158176 CCGTGGGTTCGAATCCCACCCTTTCCG 158202 ||||||||||||||||||| || |||| Sbjct 983 CCGTGGGTTCGAATCCCACTCTCTCCG 957 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 596042297980240