Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudoperonospora_20cubensis_20[genbank_20GCA_5F000252605.1_202012- 03-13] 35,539 sequences; 64,332,776 total letters Query= NC_032111.1 Length=163005 Score E Sequences producing significant alignments: (Bits) Value seq1997 183 3e-41 seq195 96.9 4e-15 >seq1997 Length=5797 Score = 183 bits (202), Expect = 3e-41 Identities = 588/910 (65%), Gaps = 68/910 (7%) Strand=Plus/Plus Query 23217 TTTTTGATATTCCCCAACACGTCTTTCGAAAAAATTTGTCTTACCCTCTAATGATATATT 23276 ||| |||||||| ||| | | ||||||| |||||||| ||||||| ||| || || | Sbjct 1824 TTTCTGATATTCTGAAACTCTTTTTTCGAAGAAATTTGTTTTACCCTGTAAAGAGATCAT 1883 Query 23277 TTCCATAAAATCAAATGGATTAGAAGTATTATATACAGCTTTACATGATAATTCCTTTAA 23336 |||||||||||||| ||||| | || ||||| || | |||| |||||| ||| Sbjct 1884 ATCCATAAAATCAAACGGATTCGCAGAGTTATACACTCTTGCACATCCTAATTCTACTAA 1943 Query 23337 AAGCCTATCTGCTACAAATTCAATATATTGACACATCAAATCATAGTTTATACCTATTAG 23396 | || || | ||||||||| | ||||| ||| || | ||| || || |||| Sbjct 1944 TAATCTGTCGGTTACAAATTCTAAGTATTGTGTCATTAAGTTTGCGTTCATTCCAATTAA 2003 Query 23397 TTTTACTGGAATCGCATCATATAAGAATAGTTTTTCAATGGAAACAGCAT---------- 23446 | || |||| | || || ||| | ||||||| || ||| | Sbjct 2004 GCTCACCGGAAGAGATTCTGTTATAAATTCTCTTTCAATATCAAGAGCCTGTACCAGGAT 2063 Query 23447 --CTTTAATTAT-----TTGAACAATAACTTCTTCACTAGGTGGATATTTTAAATACTTA 23499 || ||||| | ||||| | || || || |||||| || | | Sbjct 2064 TTCTGTAATTCTGGCTTTTGAA----ACTTTATTAACGAGGTGGTGGTTGTGCA------ 2113 Query 23500 AACAATAAACATGCAAAATCACAATGTAGGCCTTCATCCCTACTAATCAATTCATTAGAA 23559 ||| || ||||||||||||||||| ||||||||| | |||||||||||| ||| Sbjct 2114 ---AATGCAC-TGCAAAATCACAATGTACGCCTTCATCACGTGAAATCAATTCATTTGAA 2169 Query 23560 AATGTTAATCCTGGCATTAATCCTCGTTTTTTAATCCAAAATATTGCAGCAAATGATCCG 23619 || || | || ||||| ||||| |||||||| | |||| | || | | |||| ||| Sbjct 2170 AAAGTAAGACCCGGCATCAATCCACGTTTTTTCAACCAATAGATAGAACAGAATGCTCCT 2229 Query 23620 GAAAAGAAAATACCCTCAACAGCCGCAAAGGCCACAAGACGTGTACCAAATGTTGCATTA 23679 || || || || || || || || ||||| || | || | | | |||||| Sbjct 2230 GAGAAAAAGATTCCTTCTACGGCTGCAAAAGCAATCAGTCTTTCAGCAAATG-------- 2281 Query 23680 TAATCAGA---AATCCAtttttttGTCCAATTAGCCTTCAATTTTACACACTCAATTGTT 23736 |||| || |||||||||| | ||| | || || ||| || ||||| Sbjct 2282 -AATCGGATTCAATCCATTTTAAAGCCCAGTCCGCTTT----TTT-----CTTAATTGCC 2331 Query 23737 TCAATTGCTTTTAAGA----GAAAAGTT-----TTTTCTTCATTATCTGTTATATATGTA 23787 || | ||| || |||||| | |||||| | | |||| ||| ||| ||| Sbjct 2332 GGAAATACTTCCAAAGCGTGGAAAAGCTGGTCCTTTTCTGCTTCATCTTTTACATACGTA 2391 Query 23788 TCAATTAGTAAACTATACATTTCAGAATGAATATTTTCAATAGCAATCTGAAACCCATAA 23847 ||||| || | | ||| |||| || ||||| || || || || || || || Sbjct 2392 TCAATCAGAAGAGAATAGGTTTCGCTGTGGATATTCTCCATCATGATTTGGAATCCGTAG 2451 Query 23848 AAACATCTAGCTTCAGACAATTGAACATCATTAAAAAATCTTTTAGCTAAATTTTCGTTA 23907 ||| || ||||||| | ||||||| || || | ||| | | || | ||||| || Sbjct 2452 AAAAATTTAGCTTCCGGATATTGAACTTCGTTTACAAAATTCTCTGCCAGGTTTTCATTC 2511 Query 23908 ACAATACCATCACTAGCAGCAAAGAAAGCAAGAACATATTTTATAAAATGTCTTTCATCA 23967 |||||||| || |||||||| ||||| | || || ||| ||||||| | | |||||| Sbjct 2512 ACAATACCGTCTGATGCAGCAAAAAAAGCTAAAATATGTTTGATAAAATATTTCTCATCA 2571 Query 23968 GT--TGATAATTTT-TTCCAATCATTAATATCTTTTGAT--AAATCAACTTCATCAACTG 24022 | | | | || ||||| || | ||| | || | ||||||| ||| || | | Sbjct 2572 TTATTCAGCTTATTGTTCCAGTC--TGATAAATCCTGGTGCAAATCAATTTCTTCGGCAG 2629 Query 24023 TCCAAAAACTTGCCAAGGCACGCTTATACATTAGCCAAATATCATTATGTTGTATTGGAA 24082 ||||||||||||| ||||||| ||||||||||| |||| ||| || | Sbjct 2630 TCCAAAAACTTGCTTCCATTTTCTTATACCACTCCCAAATATCATGGTGTTTTATAGGGA 2689 Query 24083 ATATTACGAA 24092 | || ||||| Sbjct 2690 AAATCACGAA 2699 >seq195 Length=24554 Score = 96.9 bits (106), Expect = 4e-15 Identities = 384/595 (65%), Gaps = 22/595 (4%) Strand=Plus/Minus Query 23509 CATGCAAAATCACAATGTAGGCCTTCATCCCTACTAATCAATTCATTAGAAAATGTTAAT 23568 || ||||| || ||| | || ||||| | ||| || | ||||| ||||| | | Sbjct 23291 CAGGCAAAGTCGGTATGCATACCCTCATCACGACTGATAAGCTCATTCGAAAAGCTGAGA 23232 Query 23569 CCTGGCATTAATCCTCGTTTTTTAATCCAAAATATTGCAGCA-AATGATCCGGAAAAGAA 23627 || ||||| | || ||||| || | ||| || || | |||| || || || || ||||| Sbjct 23231 CCAGGCATGAGACCACGTTTCTTCAGCCAGAAGATGG-AGCAGAAGGAGCCAGAGAAGAA 23173 Query 23628 AATACCCTCAACAGCCGCAAAGGCCACAAGACGTGTACCAAATGTTG---CATTATAATC 23684 |||||||| || | || || || | |||||| | ||| | || || Sbjct 23172 GATACCCTCCACTGAGGCGAACGCAAGAAGACGCTCTGCGTATGACGACACACGCGGGTC 23113 Query 23685 AGAAATCCAtttttttGTCCAATTAGCCTTCAATTTTACACACTCAATTGTTTCAATTGC 23744 | | ||| || || |||| || ||| || |||||| || || ||||| || Sbjct 23112 ACA---CCACTTGAGTGCCCAAGCGGCTTTCTTCTTCACACACGGGATAGTGTCAATGGC 23056 Query 23745 TTTTAAG-AG-AAAAGTT--TTTTCTTCATTATCTGTTATATATGTATCAATTAGTAAAC 23800 | | || ||||| | || ||| || || | || || || ||||| |||| Sbjct 23055 ----ACGCAGCAAAAGGTCCTTCTCTACAGCGTCCTTGATGTACGTGTCAATGAGTAGCG 23000 Query 23801 TATACATTTCAGAATGAATATTTTCAATAGCAATCTGAAACCCATAAAAACATCTAGCTT 23860 ||| | || || ||||| || || |||||||||||||| || || ||||| | ||||| Sbjct 22999 AATAGACCTCCGAGTGAATGTTCTCGATAGCAATCTGAAAACCGTAGAAACACCGAGCTT 22940 Query 23861 CAGACAATTGAACATCATTAAAAAATCTTTTAGCTAAATTTTCGTTAACAATACCATCAC 23920 | | | || || || || || | | || | ||||| || ||||| ||||||| Sbjct 22939 CGGGAACCTGCACTTCGTTGCTGAAGTTCATGGCCAGGTTTTCATTCACAATGCCATCAC 22880 Query 23921 TAGCAGCAAAGAAAGCAAGAACATATTTTATAAAATGTCTTTC---ATCAGTTGATAATT 23977 | || |||||||| || || |||| || ||||| || | || ||||| | | Sbjct 22879 TGGCTGCAAAGAAGGCGAGCACATGCTTGATAAAGTGACGCTCGTTGTCAGT---GAGGT 22823 Query 23978 TTTTCCAATCATTAATATCTTTTGATAAATCAACTTCATCAACTGTCCAAAAACTTGCCA 24037 |||||||||| ||||| || | | ||| | || ||| | |||||||| ||| Sbjct 22822 TTTTCCAATCTTTAATGTCGTGCACCAGATCCAGCTCCTCAGCCGTCCAAAACGAGGCCT 22763 Query 24038 AGGCACGCTTATACATTAGCCAAATATCATTATGTTGTATTGGAAATATTACGAA 24092 || ||| ||||| |||| | |||||| | || || || || | ||| || Sbjct 22762 CAGCTTTCTTGTACATCTGCCAGACATCATTCTCCTGAATCGGGAAGAGTACAAA 22708 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 521256335474600