Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudoperonospora_20cubensis_20[genbank_20GCA_5F000252605.1_202012- 03-13] 35,539 sequences; 64,332,776 total letters Query= NC_033780.1 Length=144510 Score E Sequences producing significant alignments: (Bits) Value seq7414 147 2e-30 seq19645 131 2e-25 seq2166 123 2e-23 seq14623 114 1e-20 seq28136 104 2e-17 seq20474 100 3e-16 seq34320 96.9 3e-15 seq31347 93.3 4e-14 seq34564 82.4 7e-11 seq121 82.4 7e-11 >seq7414 Length=1926 Score = 147 bits (162), Expect = 2e-30 Identities = 175/232 (75%), Gaps = 4/232 (2%) Strand=Plus/Plus Query 41639 CCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGG 41698 ||||| ||||| | ||| || |||||||| ||||||||||||||| |||||| | Sbjct 1 CCGCGCAGACGAAGCACAAGGTGCAGCGTCGACTCCTTCTGAATGTTGTAGTCGCTCAAC 60 Query 41699 GTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACG 41758 ||||| | || || ||||||||||||||||| |||| ||||| ||||| | |||| | Sbjct 61 GTGCGGCCATCCTCCAGCTGCTTGCCGGCGAAAATCAAACGCTGCTGGTCAGGAGGAATG 120 Query 41759 CTCTCCTTGTCCATGATTTTTTG-CTTCAACGACGAC-ACAGTGTCGCTCGACTCCACCT 41816 | ||||||||| ||| | || | |||| ||| | | | | ||| |||||| || | Sbjct 121 CCTTCCTTGTCC-TGAATCTTCGTCTTC-ACGTTGTCGATCGAGTCCGACGACTCGACGT 178 Query 41817 CCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATGTTATC 41868 | | || ||||| || ||||||| |||||| |||||||||||||| || || Sbjct 179 CAAGAGTGATCGTCTTGCCCGTCAACGTCTTCACGAAAATCTGCATCTTGTC 230 >seq19645 Length=690 Score = 131 bits (144), Expect = 2e-25 Identities = 157/211 (74%), Gaps = 2/211 (1%) Strand=Plus/Minus Query 41653 CACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTC 41712 ||| || || || || ||||||||| ||||||||||| | ||| ||||| | || || Sbjct 329 CACGAGGTGGAGGGTCGACTCCTTCTGGATGTTATAGTCCGCGAGTGTGCGGCCATCCTC 270 Query 41713 GAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCAT 41772 ||||||||| |||||||||||||| | ||| ||||||| ||||| || ||||||||| | Sbjct 269 GAGCTGCTTCCCGGCGAATATCAGCCTCTGCTGGTCCGGGGGAATGCCTTCCTTGTCC-T 211 Query 41773 GATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCACCTCCACCGTTATCGTTT 41831 | | || || | || | | | |||||| ||||||||| | ||| || || | Sbjct 210 GGATCTTCGCCTTGACATTGTCAATCGTGTCGGAGCTCTCCACCTCGAGCGTGATGGTCT 151 Query 41832 TACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 | || || || ||||| ||||| |||||||| Sbjct 150 TCCCGGTAAGGGTCTTCACGAAGATCTGCAT 120 Score = 131 bits (144), Expect = 2e-25 Identities = 168/229 (73%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || || ||||| | ||| || || || || ||||||||| ||||| ||||| | Sbjct 574 CCACCACGGAGACGGAGCACAAGGTGAAGGGTCGACTCCTTCTGGATGTTGTAGTCCGCA 515 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 || ||||| | || ||||||||||| ||||| || ||||| | ||| ||||||| ||| Sbjct 514 AGCGTGCGGCCATCCTCGAGCTGCTTCCCGGCAAAGATCAGCCTCTGCTGGTCCGGAGGA 455 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCAC 41814 | | |||||||||| || | ||||| | ||| | | |||||| |||||| Sbjct 454 ATCCCCTCCTTGTCC-TGGATCTTTGCCTTGACGTTATCGATCGTGTCGGAGCTCTCCAC 396 Query 41815 CTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATG 41863 ||| | ||||| || || || ||||||||||| ||||| ||||||||| Sbjct 395 CTCGAGGGTTATGGTCTTCCCGGTCAGCGTCTTCACGAAGATCTGCATG 347 >seq2166 Length=5462 Score = 123 bits (136), Expect = 2e-23 Identities = 143/191 (75%), Gaps = 4/191 (2%) Strand=Plus/Plus Query 41675 TTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATC 41734 ||||| ||||| ||||| || || || || | || ||||||||||||||||| || ||| Sbjct 776 TTCTGGATGTTGTAGTCCGAAAGCGTTCGGCCATCCTCGAGCTGCTTGCCGGCAAAAATC 835 Query 41735 AGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCATGATTTTTTGCTT--CAACGACG 41792 |||||||| ||||| | |||| | ||||| ||| |||||| ||||| || | | Sbjct 836 AGGCGCTGCTGGTCAGGCGGAATACCTTCCTTTTCCTGGATTTTCTGCTTGACATTGTCA 895 Query 41793 ACACAGTGTCGCTCGACTCCACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGA 41852 | || |||| || |||||| |||| ||| || || || || ||||| ||||| || | Sbjct 896 ATGCA--GTCGGACGGCTCCACGTCCAACGTGATGGTCTTGCCGGTCAGGGTCTTCACAA 953 Query 41853 AAATCTGCATG 41863 | ||||||||| Sbjct 954 AGATCTGCATG 964 >seq14623 Length=969 Score = 114 bits (126), Expect = 1e-20 Identities = 158/214 (74%), Gaps = 8/214 (4%) Strand=Plus/Minus Query 41654 ACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCG 41713 || |||||||| || ||||| ||||| || ||||| | ||||| || |||| ||| Sbjct 470 ACGAGATGCAGGGTTGATTCCTTTTGAATATTGTAGTCTGCCAGGGTTCGGCCGTCTTCG 411 Query 41714 AGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTC-CGCGGGAACGCTCTCCTTGTCCAT 41772 |||||||| ||||| |||||||| || || ||||| |||||| || ||||||||| | Sbjct 410 AGCTGCTTTCCGGCAAATATCAGACGTTGCTGGTCAGGCGGGATTCCT-TCCTTGTCC-T 353 Query 41773 GATTTTTTGCTTCAACGACGACACAGTGTCGCTCGA---CTCCACCTCCACCGTTATCGT 41829 | | || |||| || | || | || | ||| ||| || |||| ||||||||| Sbjct 352 GGATCTTGGCTTTTACATTGTCA-ATGGTATC-CGAGCTCTCAACTTCCAACGTTATCGT 295 Query 41830 TTTACCCGTCAGCGTCTTTACGAAAATCTGCATG 41863 ||||| ||||| || || ||||| ||||||||| Sbjct 294 CTTACCAGTCAGGGTTTTGACGAAGATCTGCATG 261 Score = 109 bits (120), Expect = 5e-19 Identities = 105/135 (78%), Gaps = 0/135 (0%) Strand=Plus/Minus Query 41645 AGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGC 41704 ||||| | || |||||||||||| |||||||| || || || |||| ||||| || Sbjct 251 AGACGGAGGACAAGATGCAGCGTGGATTCCTTCTGGATATTGTAATCGGCAAGGGTTCGG 192 Query 41705 TCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCC 41764 | || || |||||||| || || |||||||| ||||||||||||| ||||| || ||| Sbjct 191 CCATCTTCCAGCTGCTTTCCAGCAAATATCAGACGCTGTTGGTCCGGGGGAATGCCTTCC 132 Query 41765 TTGTCCATGATTTTT 41779 || ||| ||||||| Sbjct 131 TTATCCTGGATTTTT 117 Score = 89.7 bits (98), Expect = 5e-13 Identities = 156/223 (70%), Gaps = 8/223 (4%) Strand=Plus/Minus Query 41645 AGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGC 41704 ||||| | || ||||||| || || |||||||| || ||||| | ||||| || Sbjct 935 AGACGGAGGACAAGATGCAAGGTAGATTCTTTCTGAATATTGTAGTCAGCAAGGGTTCGG 876 Query 41705 TCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCC 41764 | || |||||||| || || || || ||||||||||| ||||| | ||| | || ||| Sbjct 875 CCATCTTCGAGCTGTTTTCCAGCAAAGATCAGGCGCTGCTGGTCAGGGGGGATGCCTTCC 816 Query 41765 TTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTC---GCTCGACTCCACCTCCAC 41820 |||||| || | || || | || | | | ||||| ||| |||||| |||| Sbjct 815 TTGTCC-TGTATCTTAGCCTTCACATTGTCGATGGTGTCCGAGCT---CTCCACTTCCAA 760 Query 41821 CGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATG 41863 || || || ||||| || || || || || || ||||||||| Sbjct 759 AGTAATGGTCTTACCTGTTAGGGTTTTGACAAAGATCTGCATG 717 Score = 87.8 bits (96), Expect = 2e-12 Identities = 155/222 (70%), Gaps = 8/222 (4%) Strand=Plus/Minus Query 41645 AGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGC 41704 ||||| | ||||| |||| ||| || ||||| ||||| || |||| ||||| | Sbjct 707 AGACGGAGGACCAGGTGCAAGGTGGATTCTTTCTGGATGTTGTAATCGGCAAGGGTTCTA 648 Query 41705 TCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCC 41764 | || ||||||||||| ||||| || || | ||||| ||||| | ||||| || ||| Sbjct 647 CCATCCTCGAGCTGCTTTCCGGCAAAGATTAAACGCTGCTGGTCAGGGGGAATGCCCTCT 588 Query 41765 TTGTCCATGATTTTTTGCTTCA-ACGACGACACAGTGTC---GCTCGACTCCACCTCCAC 41820 |||||| ||| || ||| | | | | | ||| || ||| ||| || |||| Sbjct 587 TTGTCCTGGATCTTGGCCTTGACATTATCA-ATAGTATCCGAGCT---CTCAACTTCCAA 532 Query 41821 CGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 || ||||| || || || || || || || ||||||||||| Sbjct 531 GGTGATCGTCTTTCCAGTGAGGGTTTTAACAAAAATCTGCAT 490 >seq28136 Length=407 Score = 104 bits (114), Expect = 2e-17 Identities = 155/215 (72%), Gaps = 4/215 (2%) Strand=Plus/Minus Query 41653 CACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTC 41712 ||| || |||| || ||| ||||||||||| || || | || ||||| | || || Sbjct 221 CACAAGGTGCAAGGTTGACTCTTTCTGAATGTTGTAATCCGCCAGAGTGCGTCCATCTTC 162 Query 41713 GAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTC-CGCGGGAACGCTCTCCTTGTCCA 41771 | ||||||||| || |||||||| || || ||||| |||||| | || || |||||| Sbjct 161 CAACTGCTTGCCCGCAAATATCAGACGTTGCTGGTCGGGCGGGATCCCT-TCTTTGTCCT 103 Query 41772 TGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCACCTCCACCGTTATCGTT 41830 |||||| |||| || | | | || ||||| || || || | ||||| || Sbjct 102 GGATTTTGGCCTTC-ACATTGTCGATTGTATCGCTGCTTTCAACTTCTAAGGTTATGGTC 44 Query 41831 TTACCCGTCAGCGTCTTTACGAAAATCTGCATGTT 41865 || |||||||| ||||||||||| |||||||| || Sbjct 43 TTGCCCGTCAGGGTCTTTACGAAGATCTGCATCTT 9 >seq20474 Length=655 Score = 100 bits (110), Expect = 3e-16 Identities = 155/219 (71%), Gaps = 2/219 (1%) Strand=Plus/Plus Query 41645 AGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGC 41704 ||||| | || || || || ||| ||||||||||||||||||||||| | |||||| Sbjct 107 AGACGAAGGACAAGGTGGAGGGTGGACTCCTTCTGAATGTTATAGTCGGCCAAGGTGCGG 166 Query 41705 TCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCC 41764 | || ||||||||||| || || || || || | ||| ||||| | || | | |||| Sbjct 167 CCATCTTCGAGCTGCTTCCCAGCAAAGATGAGCCTCTGCTGGTCTGGTGGGATTCCCTCC 226 Query 41765 TTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCACCTCCACCGT 41823 |||| | || | || || | ||| | | | || ||| ||| ||||| | || Sbjct 227 TTGT-CTTGGATCTTGGCCTTAACATTGTCAATTGTATCGGAGCTCTCTACCTCGAGAGT 285 Query 41824 TATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 || || ||||| || || ||||| || ||||||||||| Sbjct 286 GATTGTCTTACCAGTGAGGGTCTTCACAAAAATCTGCAT 324 >seq34320 Length=242 Score = 96.9 bits (106), Expect = 3e-15 Identities = 138/192 (72%), Gaps = 2/192 (1%) Strand=Plus/Plus Query 41675 TTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATC 41734 ||||| ||||| ||||||| | ||| || | || |||||||||||||| ||||| ||| Sbjct 1 TTCTGGATGTTGTAGTCGGCCAAGGTACGGCCATCCTCGAGCTGCTTGCCAGCGAAGATC 60 Query 41735 AGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC 41794 || | ||| ||||||| || | || ||||||||| || | || || | ||| | | Sbjct 61 AGCCTCTGCTGGTCCGGCGGGATGCCTTCCTTGTCC-TGGATCTTGGCCTTGACGTTGTC 119 Query 41795 -ACAGTGTCGCTCGACTCCACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAA 41853 | |||||| ||| ||||| | || || || || || || || ||||| ||||| Sbjct 120 GATGGTGTCGGAGCTCTCGACCTCGAGAGTGATGGTCTTGCCGGTGAGGGTCTTGACGAA 179 Query 41854 AATCTGCATGTT 41865 |||||||| || Sbjct 180 GATCTGCATCTT 191 >seq31347 Length=324 Score = 93.3 bits (102), Expect = 4e-14 Identities = 105/138 (76%), Gaps = 2/138 (1%) Strand=Plus/Plus Query 41634 CGCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGG 41693 |||| || || || || | || || || || || |||||||||||||| || || | Sbjct 184 CGCCACCACGGAGGCGGAGGACAAGGTGGAGGGTCGATTCCTTCTGAATGTTGTAATCCG 243 Query 41694 AGAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCC-GCG 41752 ||||||||| |||| ||||||||||| || ||||| || || | ||| |||||| ||| Sbjct 244 CAAGGGTGCGCCCGTCCTCGAGCTGCTTCCCAGCGAAGATAAGCCTCTGCTGGTCCGGCG 303 Query 41753 GGAACGCTCTCCTTGTCC 41770 ||| | | |||||||||| Sbjct 304 GGATC-CCCTCCTTGTCC 320 >seq34564 Length=234 Score = 82.4 bits (90), Expect = 7e-11 Identities = 132/186 (71%), Gaps = 8/186 (4%) Strand=Plus/Minus Query 41682 TGTTATAGTCGGAGAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCT 41741 |||| ||||| | ||||| | | |||| ||||||||||| || || || || || | || Sbjct 234 TGTTGTAGTCCGCAAGGGTCCTCCCGTCCTCGAGCTGCTTACCCGCAAAGATAAGCCTCT 175 Query 41742 GTTGGTCCGCGGGAACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTG 41800 | ||||||| || | || |||||||||| ||| || |||| ||| | | ||| Sbjct 174 GCTGGTCCGGAGGGATGCCCTCCTTGTCCTGGATCTTGGCCTTC-ACGTTATCGATGGTG 116 Query 41801 TC---GCTCGACTCCACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATC 41857 || ||| ||||||||| | || || || || || || || ||||| || || ||| Sbjct 115 TCCGAGCT---CTCCACCTCGAGGGTGATGGTCTTCCCGGTGAGGGTCTTGACAAAGATC 59 Query 41858 TGCATG 41863 |||||| Sbjct 58 TGCATG 53 >seq121 Length=30622 Score = 82.4 bits (90), Expect = 7e-11 Identities = 93/125 (74%), Gaps = 0/125 (0%) Strand=Plus/Plus Query 41632 ACCGCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTC 41691 ||| || || || ||||| | ||| || |||| ||| ||| ||||| ||||| || || Sbjct 21080 ACCACCACCACGCAGACGCAGCACGAGGTGCAACGTCGACTCTTTCTGGATGTTGTAATC 21139 Query 41692 GGAGAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGC 41751 | || | ||| | || || ||||||||||| ||||| ||||| ||||| ||||| | Sbjct 21140 CGCCAGAGAGCGACCATCTTCCAGCTGCTTGCCAGCGAAGATCAGACGCTGCTGGTCAGG 21199 Query 41752 GGGAA 41756 ||||| Sbjct 21200 GGGAA 21204 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462098627226800