Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pythium_20insidiosum_20[genbank_20GCA_5F000764265.1_202014-10-06] 8,992 sequences; 45,609,708 total letters Query= NC_000852.5 Length=330611 Score E Sequences producing significant alignments: (Bits) Value seq7209 194 4e-44 seq4347 116 8e-21 seq1165 95.1 3e-14 >seq7209 Length=39369 Score = 194 bits (214), Expect = 4e-44 Identities = 689/1058 (65%), Gaps = 53/1058 (5%) Strand=Plus/Plus Query 318990 CTCTTTGTCTTCACCGGAGGCATAACGCCATTGGATATACTGGTTGGGTGTCATGTCAAG 319049 ||| ||||| ||||| || ||||||| ||||| |||||||||| || ||||| || Sbjct 15289 CTCCTTGTCCTCACCCGACTGGAAACGCCACTGGATGTACTGGTTGGCCGTGATGTCGAG 15348 Query 319050 ATGATCCTCGATGTGGTGGAAAGCATGCTGTGCCACGTAAGCAAGACGCATATTTGGATG 319109 || ||||| ||||||||||| || ||||| || ||||| || | |||||| || || Sbjct 15349 GTGCTCCTCAATGTGGTGGAACGCGTGCTGGGCAACGTAGGCGAAACGCATGGCCGGGTG 15408 Query 319110 CTTCCAAACACTACCGATGGTGGCTTCCATTTGTCCCGTGAGCACCTTAATGAGGGTGCT 319169 |||||| || |||||| || | || | | ||||| |||| ||| ||||| || Sbjct 15409 CTTCCACACCGTACCGACCGTAGGCTCAACCTCACCCGTAAGCATCTTGATGAGCGTCGA 15468 Query 319170 TTTCCCCGCACCGTTTTCGCCCACCACACCGATCCTGGAGTTCAGCGATACCTGGGCA-T 319228 || || |||||||| ||| | ||| |||| | ||| ||||| ||| Sbjct 15469 CTTACCGGCACCGTTGGGGCCGATGACAGCGATACGCGAGGCGAGCGA-------GCACG 15521 Query 319229 TCACGT---TGTCAAAGAT---TAGTTTTTCCGTACCCGGATACTTGAACCCCACACCGC 319282 |||||| ||||| ||| | || || || || |||| | | | || | Sbjct 15522 TCACGTTGATGTCACGGATCGACGGCTTGTCGCGGCCAGGGTACTGGTA-CGAGCAGTTC 15580 Query 319283 GT-AGCTTCATGAT-GGC--ACGGTCCTTCGAAGTGATACCCTCGAGGAACCCGGGCTCG 319338 || || ||||| ||| || |||| ||||| | | ||||| || ||||| Sbjct 15581 GTCAGACGAATGATCGGCTTAC---CCTTGTTCTTGATATCAGCAAGGAAACCAGGCTCA 15637 Query 319339 GGGAACTTCCACGTG--GTCTTC-GTCTCGGTAAGGGCGTAGTAACTCGCTGATTCGGGA 319395 |||||| | || || | | | | ||| ||| ||||||| || | || || Sbjct 15638 GGGAACGTGAACTTGAAGGCAGCAGCCTC---AAGCTCGTAGTACGTCTTGGCCTCCGGC 15694 Query 319396 CGCTTCTTCACGAACTCGGACAGATTTCCCTTGTACTTCTTCAGCTTTAGGTTAGGTTCG 319455 || ||| |||||||| || || || ||||||||| |||||||||| |||| ||| Sbjct 15695 TTCTGCTTGACGAACTCAGAGAGGTTACCCTTGTACGTCTTCAGCTTGCGGTT---CTCG 15751 Query 319456 TAATGGATAATAGAGGTGCAAACAGCGTCGAGGAACCCGGAGTCGTGTGACACAATCACG 319515 || ||||| || ||||| || | ||||||||| || |||||||| |||||||| | Sbjct 15752 TAGTGGATGATGTTCGTGCAGACCGTGTCGAGGAAACCAGAGTCGTGCGACACAATGAGC 15811 Query 319516 CACGAAACGTCCTTAAGGTTGATCAGGTATTCAATCAACCACCTCACGTTAGACACAGAA 319575 ||| |||| | | ||| | | ||||| || | |||| | ||||| |||| Sbjct 15812 GACGTCACGTTCGTGAGGCTCGTGAGGTAGTCCTCGAGCCACTTGACGTTGTGCACATCC 15871 Query 319576 AGATGGTTGGTCGGCTCGTCAAGAAGCAGTAGCTTTGCGTTCAGGAGCATTGCACGTGCA 319635 | ||||| |||||||| || ||||| || | | || |||| |||||| ||||| || Sbjct 15872 AAGTGGTTCGTCGGCTCATCGAGAAGGAGGATATCAGCCTTCATGAGCATGGCACGGGCC 15931 Query 319636 AGAGCGAGTTTCATTTTCCACCCTCCGGAAAGAGTGTTAATTGGGGCAGATTGGCGCTCA 319695 | | || ||||| ||||| || || | |||| | |||| |||| || Sbjct 15932 AACTCAAGCTTCATCTTCCAACCACCCG--AGAGGGCACCGACAGGCA---TGGC-CTGC 15985 Query 319696 ATATC------AAAGCCAACCGATTCTAGAGTA-GTTAC-GATCTTTTCACGAGACCAAA 319747 || || ||||| || || ||| | || || || || ||||| | | | Sbjct 15986 ATCTCGGCCGTGAAGCCGAC--GCTCGTGAGCATGTCACGGACCTCCTCACGCGGC---A 16040 Query 319748 TGTTTTCCTTTACTTGTTCATCATTGGCAATGAAGTCAATGATAGCCGTGTTAGAATCGG 319807 ||| ||| | || ||| | |||||||| |||| | | || || Sbjct 16041 GGTT---CTTGAGGGCCTCGTCACAGAACATGAAGTCGATGACCGGAAGCTCAGCCTCCT 16097 Query 319808 ACCCGTCGAGATCGTGTTCCACGTAAGCAGTTTTCAAAACATCCGCAGAGGGGAACCCTT 319867 | | ||| | ||| || ||| | | || || | ||||| | ||||| || | Sbjct 16098 CAGCCTGGAGGTTGTGCTCGACGAAGACCGTCTTGAGCTCATCCTGCGTAGGGAAGCCCT 16157 Query 319868 CAAGCTGGCCGTTCACAATAGCGCGCATCAGGGTTGATTTACCCGCCCCGTTTGGCCCAC 319927 | |||||||||||| || |||||||| || || || ||||| ||||| || || | Sbjct 16158 CGAGCTGGCCGTTCGAGATGGCGCGCATAAGCGTCGACTTACCGCAACCGTTCGGGCCGC 16217 Query 319928 ACAGACCGTAGCGGTTTCCGCGTTTCAGGTTGAACCGCGTGTTGTTCAGAAGAATTTTTC 319987 ||||||||||||||| || || || ||| | || | ||||||||| ||||| | | Sbjct 16218 ACAGACCGTAGCGGTGGCCACGCTTGAGGCGAAGGCGGGCGTTGTTCAGCAGAATCATAC 16277 Query 319988 CACCATATGCCAGAGAAAATTCACAATCACACAGATCC 320025 |||| || || || || || || || | || |||||| Sbjct 16278 CACCGTAGGCGAGCGAGAACTCGCAGTTGCAGAGATCC 16315 >seq4347 Length=93765 Score = 116 bits (128), Expect = 8e-21 Identities = 552/865 (64%), Gaps = 28/865 (3%) Strand=Plus/Minus Query 229759 TTCCCAATCCAATATCCCGATATGTGGGATATGTACAAGAAGGCGGTGGCAACTTTCTGG 229818 ||||| ||||| | ||| ||||| | |||||||||||||| | ||| | |||||| Sbjct 73295 TTCCCGATCCAGGAGAACGAGGTGTGGCAGATGTACAAGAAGGCCGAGGCGAGCTTCTGG 73236 Query 229819 ACCACTGAGGAAGTTC---CTC-TGAACGCAGACGTCGTCGACTGGCGTGAGAAACTCAA 229874 ||| | ||||| | || ||| || ||| || || |||||| | || |||| Sbjct 73235 ACCGCCGAGGA-GATCGATCTCGTGCACG---ACCTCAAGGACTGGGGC---AACCTCAC 73183 Query 229875 TGACGACGAACGTCATTTCATCAAACACATCCTAGGTTTTTTCGCAGGCTCCGATGGTAT 229934 ||| |||| || || || ||||| ||| |||| | || ||||| | ||| ||||| Sbjct 73182 GGACAACGAGCGCCACTTTATCAAGCACGTCCTCGCGTTCTTCGCGGCGAGCGACGGTAT 73123 Query 229935 TGTGATGGAAAATCTGCAGACCAACTTTAGTGTGGAAGTAACGGTTCCAGAGGCACGGCA 229994 || | || || || || ||||| || || || |||||| ||||| || Sbjct 73122 CGTCAACGAGAACCTCGCGATGAACTTCAGCAGCGAGGTGCAGGTTCCTGAGGCGCGTTG 73063 Query 229995 ATTTTATGCTTACCAAA----CATTCAACGAATCTATCCATTCTGAACAATATGCTCTGC 230050 || |||| | ||| | |||| | ||| ||||| || || || | |||| Sbjct 73062 CTTCTATGGCTTCCAGATCGCCATTGA--GAAC--ATCCACTCGGAGGTGTACTCGCTGC 73007 Query 230051 TTATCGACGCGCTTATTTCCGACGAGCAAGAACGGAACGAGCTTTTTGATGCCATTGAAA 230110 | || ||| || || ||| || || |||| | || | ||||| || | Sbjct 73006 TCATTGACACGTACATCAAGGACCAGACGGAGAAGAACCACCTCCTCCGCGCCATCGAGA 72947 Query 230111 ACATCCCGGCGGTTCATAACAAGGCAAAGTGGGCTCAGAAATGGCTAGAACCTGGTAAAT 230170 ||| || || || || ||||| | ||||| | || ||| || | | Sbjct 72946 CCATTCCATGCGTGCAGAAGAAGGCGCACTGGGCGCTCAAGTGGTGCGACTCGCGCCGCG 72887 Query 230171 CG---TTTGCCGAGCGTCTCGTCGCCTGGGTGTGTGTTGAAGGTATTCTGTTTTCCGGGA 230227 || ||||| ||||| | ||||| | | ||||| || ||| | || || || Sbjct 72886 CGGCTTTTGCTGAGCGCATTGTCGCGTTCGCTGCCGTTGAGGGCATTTTCTTCTCGGGCT 72827 Query 230228 GTTTCTGCGCCATCTTTTGGCTGCGGAACAAAGGTGTGATGCCTGGCCTCGGTCTGTCTA 230287 |||||| ||||||| ||||| ||| ||| | |||||||||||| | | || | Sbjct 72826 CGTTCTGCTCCATCTTCTGGCTCAAGAAGCGTGGTCTCATGCCTGGCCTCAGCTTCTCGA 72767 Query 230288 ACGAGTTCATCAGTCGCGACGAGGGTCTCCATCAACAGTTCGGCGAGCTTATGTATTCAA 230347 ||||| ||||| ||||| ||||| ||||| | |||| || |||| || | Sbjct 72766 ACGAGCTCATCTCGCGCGATGAGGGCCTCCACTGCGACTTCGCTTGCCTGCTGTACTCCA 72707 Query 230348 AGCTCCAGAACAAGCTACC--ATTCGAGACGGTCAAACAAATCATTACAGAAGCAGTTGA 230405 |||| |||||||| || | ||| | || | | |||||| || || || | Sbjct 72706 AGCTTGTCAACAAGCTCCCGGAGTCGCG--CATCCATGAGATCATTCGCGATGCCGTCGC 72649 Query 230406 AAACGAAAAGGAGTTCATTTGTGACGCTATTCCATGTCG-CCTTATTGGCATGAACGCTG 230464 | || ||||||||| | ||| | |||| |||| || || ||||||||| | Sbjct 72648 GATTGAGAAGGAGTTCGTCCAGGACTCGCTTCC-GGTCGAGCTGATCGGCATGAACTCGT 72590 Query 230465 AACTTATGGGACAGTACATCGAATTCGTAGCCGACCGCATTTTTGTTGCACTTGGTTACG 230524 || ||| | ||||||||||| ||| ||||| ||| | | || |||||| || Sbjct 72589 CGCTCATGTGCCAGTACATCGAGTTCTGCGCCGATCGCCTCCTCCACGCGCTTGGTGTCG 72530 Query 230525 AGAAAGTGTACAACTCTAAGAACCCCTTTGCATTTATGGAGCTCATTTCGCTTCAAGGGA 230584 || | ||||| |||||| |||| | ||||| | || ||||| || || | Sbjct 72529 CCAAGATTTACAAGGTGTCGAACCCGTTTGACTGGATGGACATGATCTCGCTCCAGGGCA 72470 Query 230585 AGACCAACTTCTTCGAAAAGCGTGT 230609 |||||||||||||||| ||||| || Sbjct 72469 AGACCAACTTCTTCGAGAAGCGCGT 72445 >seq1165 Length=1402 Score = 95.1 bits (104), Expect = 3e-14 Identities = 64/72 (89%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 ||||||||||||||||||||||||||| | ||||||| | |||||||||||||||||| Sbjct 77 GCCCGTCTAGCTCAGTCGGTAGAGCGCTGGCCTTTTAAGCCAGTGGTCGTGGGTTCGAGC 18 Query 165770 CCCACGATGGGC 165781 |||||| |||| Sbjct 17 CCCACGGGGGGC 6 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1057702128096960