Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pythium_20insidiosum_20[genbank_20GCA_5F000764265.1_202014-10-06] 8,992 sequences; 45,609,708 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq4347 354 8e-93 seq1220 154 2e-32 seq2702 147 2e-30 seq7397 102 8e-17 >seq4347 Length=93765 Score = 354 bits (392), Expect = 8e-93 Identities = 605/864 (70%), Gaps = 20/864 (2%) Strand=Plus/Minus Query 116576 GAGCCGCTGCTGCGCGAGAACCCCCGCCGGTTCGTGATTTTCCCCATACAATACCCGGAC 116635 |||||| | || ||||||||| ||| |||||| ||||||| || || | || Sbjct 73334 GAGCCGTTCCTCATCGAGAACCCGAACCGTTTCGTGCTTTTCCCGATCCAGGAGAACGAG 73275 Query 116636 ATGTGGCGCATGTACAAAAAGGCCGAGGCGTCGTTCTGGACCGTCGAGGAGGTGGACCT- 116694 |||||| |||||||| |||||||||||| |||||||||| ||||||| | || || Sbjct 73274 GTGTGGCAGATGTACAAGAAGGCCGAGGCGAGCTTCTGGACCGCCGAGGAGATCGATCTC 73215 Query 116695 GTCCAAGGACACGAGCGACTGGGAGCGCTTGAACGACAACGAGCGCCATTTCATCAAGCA 116754 || || | | | || ||||||| | | | |||||||||||||| || |||||||| Sbjct 73214 GTGCACGACCTCAAG-GACTGGGGCAACCTCACGGACAACGAGCGCCACTTTATCAAGCA 73156 Query 116755 CGTGCTGGCCTTTTTCGCCGCCAGCGACGGCATCGTCAACGAGAATCTGGTCGA-GCGTT 116813 ||| || || || ||||| || |||||||| |||||||||||||| || | ||| | | Sbjct 73155 CGTCCTCGCGTTCTTCGCGGCGAGCGACGGTATCGTCAACGAGAACCTCG-CGATGAACT 73097 Query 116814 TCGCTCAG-GAGGTGCAGGTGGCCGAGGCGCGGTGCTTCTACGGCTTTCAGATCGCCATG 116872 || ||| ||||||||||| | |||||||| |||||||| ||||| ||||||||||| Sbjct 73096 TCAG-CAGCGAGGTGCAGGTTCCTGAGGCGCGTTGCTTCTATGGCTTCCAGATCGCCATT 73038 Query 116873 GAGAACGTGCACTCGGAAATGTATTCGACCCTCATCGACACGTACGT---GCGCTCTTCG 116929 |||||| | |||||||| |||| ||| ||||| ||||||||| | | | || Sbjct 73037 GAGAACATCCACTCGGAGGTGTACTCGCTGCTCATTGACACGTACATCAAGGACCAGACG 72978 Query 116930 GAGGAGAAGCTCCGTTTGTTGAACGCCATCGAGACGATGCCGTGCGTCAAAGAGAAGGCC 116989 ||| |||| | || | | |||||||||||| || || ||||| | ||||||| Sbjct 72977 GAGAAGAACCACC---TCCTCCGCGCCATCGAGACCATTCCATGCGTGCAGAAGAAGGCG 72921 Query 116990 GAGTGGGCGCTGCGCTGGATCGCCGGCAGAGAGGCCGCCTTCGGCGAGCGCCTGGTGGCC 117049 | |||||||| ||| || | | || || || | |||||| | || || Sbjct 72920 CACTGGGCGCTCAAGTGGTGCGACTCGCGCCGCGCGGCTTTTGCTGAGCGCATTGTCGCG 72861 Query 117050 TTCGCGGCCGTCGAGGGCGTCTTCTTTTCGGGCAGTTTCGCCGCCATATTTTGGCTCAAG 117109 ||||| ||||| |||||| | ||||| |||||| ||| | |||| || ||||||||| Sbjct 72860 TTCGCTGCCGTTGAGGGCATTTTCTTCTCGGGCTCGTTCTGCTCCATCTTCTGGCTCAAG 72801 Query 117110 AAACGCGGCCTCATGCCCGGCCTGACTTTCAGCAACGAGCTCATCTCCAGGGACGAGGGT 117169 || || || |||||||| ||||| | ||| |||||||||||||| | || ||||| Sbjct 72800 AAGCGTGGTCTCATGCCTGGCCTCAGCTTCTCGAACGAGCTCATCTCGCGCGATGAGGGC 72741 Query 117170 CTGCATTGCGACTTTGCCTGTTTGCTG---TTCAAGCATTTGGTGCAGCGACCGAGCGCG 117226 || || |||||||| || || ||||| | ||||| | | ||| ||| | | Sbjct 72740 CTCCACTGCGACTTCGCTTGCCTGCTGTACTCCAAGCTTGTCAACAAGCTCCCG---GAG 72684 Query 117227 GCGCGCGTCAGGGAGATCGTCACCGACGCGGTCGCCATCGAGCAGCGCTTCCTCACCGAA 117286 ||||| || |||||| | ||| || ||||| || ||| || ||| || || Sbjct 72683 TCGCGCATCCATGAGATCATTCGCGATGCCGTCGCGATTGAGAAGGAGTTCGTCCAGGAC 72624 Query 117287 GCGCTGCCGGTGCGTCTGCTGGGACTCAATTGCGAAAC-GATGTCGCAATACATCGAGTT 117345 |||| ||||| ||| | || | || | || | |||| || ||||||||||| Sbjct 72623 TCGCTTCCGGTCGAGCTGATCGGCATGAACT-CGTCGCTCATGTGCCAGTACATCGAGTT 72565 Query 117346 CGTCGCCGACAGGCTGCTGCTCGAGCTGGTCGGCGCCAAGCACTACAACACGCCCAACCC 117405 | |||||| | || || | || ||| | | ||||||| ||||| | | ||||| Sbjct 72564 CTGCGCCGATCGCCTCCTCCACGCGCTTGGTGTCGCCAAGATTTACAAGGTGTCGAACCC 72505 Query 117406 GCTGGACTTTATGAACCTCATCTC 117429 | | |||| ||| || | ||||| Sbjct 72504 GTTTGACTGGATGGACATGATCTC 72481 >seq1220 Length=9499 Score = 154 bits (170), Expect = 2e-32 Identities = 173/229 (76%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| || ||||| |||||||| || ||||| ||||||| || | | Sbjct 34 ATGCAGATCTTCGTGAAGACGCTGACGGGCAAGACGATCACGCTCGACGTGGAGCCGTCG 93 Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 ||| | | |||| ||||| | || |||| ||||| |||||||| || ||||||| Sbjct 94 GACTCGATCGACAACG-TCAAGCAGAAGATTCAGGACAAGGAGGGCATTCCGCCGGACCA 152 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| || || |||| ||| ||||| |||||||| |||| ||||| || |||||||| Sbjct 153 GCAGCGCCTGATCTTCGCTGGCAAGCAGCTGGAGGACGGCCGCACGCTGTCGGACTACAA 212 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGGC 40917 ||||||||||||| | |||||||| || ||| |||| || | || ||| Sbjct 213 CATCCAGAAGGAGTCGACGCTGCACCTGGTGCTGCGTCTGCGTGGTGGC 261 >seq2702 Length=56295 Score = 147 bits (162), Expect = 2e-30 Identities = 171/231 (74%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 40686 AAAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGC 40745 ||| ||||| || ||||| || || || || ||||| || ||||| |||||||||| | Sbjct 26761 AAAGATGCAGATCTTCGTCAAGACTCTGACCGGCAAGACGATCACGCTCGACGTCGAGCC 26820 Query 40746 CACCGACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGA 40805 | |||||| | | | ||||| | || || | ||||| ||||| ||||| |||| Sbjct 26821 TTCGGACAGCATTGACAATGTCAAGCAGAAGATCCAGGACAAGGAGGGAATCCCTCCGGA 26880 Query 40806 CCAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTA 40865 ||||| || || |||| ||| ||||| ||||| || |||| ||||| ||| ||||| Sbjct 26881 TCAGCAGCGCCTGATCTTCGCCGGCAAGCAGCTCGAGGACGGCCGCACGCTCTCGGACTA 26940 Query 40866 CAACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGG 40916 |||||||||||||||| | ||||| || || ||| | ||| || | || || Sbjct 26941 CAACATCCAGAAGGAGTCGACGCTCCACCTGGTGCTCCGCCTGCGTGGTGG 26991 >seq7397 Length=9624 Score = 102 bits (112), Expect = 8e-17 Identities = 100/129 (78%), Gaps = 0/129 (0%) Strand=Plus/Minus Query 40792 GGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGC 40851 || ||||| |||| ||||| || || |||| ||| ||||| ||||| || |||| ||| Sbjct 4317 GGAATCCCTCCGGATCAGCAGCGCCTGATCTTCGCCGGCAAGCAGCTCGAGGACGGCCGC 4258 Query 40852 ACCCTCAACGACTACAACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGG 40911 ||||| ||||||||||||||||||||| | |||||||| || ||| | ||| || | Sbjct 4257 ACCCTTTCGGACTACAACATCCAGAAGGAGTCGACGCTGCACCTGGTGCTCCGCCTGCGT 4198 Query 40912 GGCGGCGGC 40920 || || ||| Sbjct 4197 GGTGGTGGC 4189 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 515161289361920