Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pythium_20insidiosum_20[genbank_20GCA_5F000764265.1_202014-10-06] 8,992 sequences; 45,609,708 total letters Query= NC_002169.1 Length=135611 Score E Sequences producing significant alignments: (Bits) Value seq3132 176 4e-39 seq2702 131 1e-25 seq1220 120 3e-22 >seq3132 Length=41768 Score = 176 bits (194), Expect = 4e-39 Identities = 534/818 (65%), Gaps = 18/818 (2%) Strand=Plus/Minus Query 132915 GTGCGCAAATAATACATGCCCGTTTTCAGTTTTTTCTCCCACGCGTAAAAGTGTATGCTC 132974 ||||||| || ||||||||||| || || |||| ||||||||| ||||| ||| | Sbjct 33443 GTGCGCAGGTAGTACATGCCCGTCTTGAGACCCTTCTTCCACGCGTAGAAGTGCATGGAC 33384 Query 132975 GACACCACCGAGTAAGTGGGTTCGGCGACAAATAAATTCAGCGATTGACTCTGATCTATG 133034 | || | | || || || |||| | || ||||| || ||||| ||| Sbjct 33383 GTCAGCTTGCTGATCGTCGGCTCCGCGATGTGCACGTTGAGCGACTGGCTCTGGCAGATG 33324 Query 133035 AAAGGAGCACGGTCGGCGGCCATGTTTATTATACACTTTGATTTGATCTCCCATGCCGTC 133094 | | | |||||||||||||||| | | ||| ||||||||||| | ||| Sbjct 33323 TAGGCGCCGCGGTCGGCGGCCATGTCGAGCACGGCCTTCTGCTTGATCTCCCACACGGTC 33264 Query 133095 TTGAAGAGATTCTTGACATGCTGTGGTATTTCGTCAATGTTCTGCACGGACCCGTTTTCG 133154 ||| | | ||| || | || || || | ||||||||| || |||| ||| Sbjct 33263 TTGTACTTCTCCTTCACGGCGTCCGGGATCACGCGCACGTTCTGCACCGAGCCGTGGTCG 33204 Query 133155 GCCAAAATCTTGTTGCGCAATTCCGGAGTGTAAATGTCGAGATCGATTAGCGCTTTGACG 133214 | |||| |||||||| || || || | ||| |||| ||||| ||| | || | | Sbjct 33203 TGGAGGATCTGGTTGCGCACCTCGGGCGTCCAGATGCCGAGCTCGATGAGCTCCTTCATG 33144 Query 133215 AGATACTGGTTGACCA-CTTGAAACTCGCCGGCGAGAACGCGTCTGAGATATACATTCGA 133273 || |||| ||| || | | |||| |||||| ||||| ||||| | | || | || | Sbjct 33143 AGGTACTTGTTCACGATCGTGAA-CTCGCCAGCGAGCACGCGGCGGTTGTACATGTTGGT 33085 Query 133274 CGTGAACGGTTCGAAAGATTCGTTGTTGCCGAGTATCTGCGCCGTCGTCGCCGTGGGCAT 133333 ||||||||| |||| || |||||||||||||| |||||||| |||| |||||| ||||| Sbjct 33084 CGTGAACGGCTCGATCGACTCGTTGTTGCCGAGGATCTGCGCGGTCGACGCCGTCGGCAT 33025 Query 133334 GTACGCCACCAACAAAGAGTTTCTTACGCCGTACTTGTTTATGTTGCACTGCAATTCGTT 133393 ||| | || || ||||| | |||||||||| | | | || | || Sbjct 33024 CGGCGCGAGCAGCAGCGAGTTGCGCACGCCGTACTGCGCGACGCTCGCCTTGAGCGCGGC 32965 Query 133394 CCAGTCCCACAGATTGTTGGAATGATAGACGCCGTTCTCGTCGTCGTAGTTGTGAAAATG 133453 ||||||||| ||| |||| || | | || | | ||| || || Sbjct 32964 CCAGTCCCAGAGA-----------CCCGACGTCG-GCGTGACGCCCCACATGTCGAACTG 32917 Query 133454 CAAAATACCCCTGCTCACCGGACTGTCCGTGTACGATTCATAGGGTCCGTTGATTTTG-G 133512 || || ||| ||||||| || || ||| | || || ||| || | | | Sbjct 32916 GAAGATGCCCTTGCTCACGGGCGAACCCTCGTAGCTGCCGTACGGGCCG-TGCTCCCGTG 32858 Query 133513 CCAGCTCGCAGCTA-GCCTCCAAAGCGGCAAAGTAAATGGTTTCCGCGATTGAATAGTTG 133571 | ||||| || | | ||||||| |||| ||||||| | || || ||| | |||| Sbjct 32857 CGAGCTC-CATCGAGGCCTCCATAGCGCCAAAGTACAGCGTCTCGAAGATGTTCTTGTTG 32799 Query 133572 ACGAACCTGGCATCGTCGCTATCGTAGGCGATGTCGAGAAGAACAAACGCGTCGGCCAAA 133631 | | ||| |||||||| ||| | ||| | | | || | |||||||| || | | Sbjct 32798 AGCTCGCGGGCCTCGTCGCTCTCGAACGCGTAGCCCATGAGGATGAACGCGTCCGCGAGA 32739 Query 133632 CCCTGTATGCCGACGCCGATGGGTCGATGTTTTTTATTGCTCCTCTCCGACTCGGCCGTG 133691 ||||| | ||||| |||||| || || || ||||| | ||| | ||||| | Sbjct 32738 CCCTGCACGCCGATGCCGATCGGGCGGTGGCGCAGGTTGCTGCGCTCGGCCTCGGGGATC 32679 Query 133692 GGATAGTGGTTGACGTCGATGATCTTGTTGAGATTGCG 133729 || |||| ||||| |||||||| |||||| || ||||| Sbjct 32678 GGGTAGTAGTTGATGTCGATGACCTTGTTCAGGTTGCG 32641 >seq2702 Length=56295 Score = 131 bits (144), Expect = 1e-25 Identities = 155/210 (74%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 118529 CACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTC 118588 ||||| ||||| || ||||| || || |||||||| || | ||||| ||||| Sbjct 26974 CACCAGGTGGAGCGTCGACTCCTTCTGGATGTTGTAGTCCGAGAGCGTGCGGCCGTCCTC 26915 Query 118589 GAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGT 118648 |||||| || || ||| |||| || ||||||||||| ||||| || ||||||||||| Sbjct 26914 GAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGATCCGGAGGGATTCCCTCCTTGTCCTG 26855 Query 118649 AATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTT 118708 || || || || || | || | | |||||| |||||| |||| || | ||| || Sbjct 26854 GATCTTCTGCTTGACATTGTCAATGCTGTCCGAAGGCTCGACGTCGAGCGTGATCGTCTT 26795 Query 118709 GCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 |||||||||||| || || || |||||||| Sbjct 26794 GCCGGTCAGAGTCTTGACGAAGATCTGCAT 26765 >seq1220 Length=9499 Score = 120 bits (132), Expect = 3e-22 Identities = 155/214 (72%), Gaps = 0/214 (0%) Strand=Plus/Minus Query 118526 CAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATC 118585 || ||||| ||| | || ||||| || || |||||||| || || ||||| || Sbjct 246 CAGCACCAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCCGACAGCGTGCGGCCGTC 187 Query 118586 CTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTC 118645 ||| ||||| || |||||| |||| || |||||||| || || || |||||||||||||| Sbjct 186 CTCCAGCTGCTTGCCAGCGAAGATCAGGCGCTGCTGGTCCGGCGGAATGCCCTCCTTGTC 127 Query 118646 TGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGT 118705 ||| || || || || | |||| | ||||| ||| || |||| || | ||| Sbjct 126 CTGAATCTTCTGCTTGACGTTGTCGATCGAGTCCGACGGCTCCACGTCGAGCGTGATCGT 67 Query 118706 TTTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 118739 ||||| ||||| || || || || ||||||||| Sbjct 66 CTTGCCCGTCAGCGTCTTCACGAAGATCTGCATG 33 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433782856526464