Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pythium_20insidiosum_20[genbank_20GCA_5F000764265.1_202014-10-06] 8,992 sequences; 45,609,708 total letters Query= NC_002687.1 Length=335593 Score E Sequences producing significant alignments: (Bits) Value seq3132 300 3e-76 seq6677 145 2e-29 seq6188 96.9 7e-15 seq4347 87.8 4e-12 >seq3132 Length=41768 Score = 300 bits (332), Expect = 3e-76 Identities = 891/1357 (66%), Gaps = 63/1357 (5%) Strand=Plus/Plus Query 248417 CCATGTACATCACCAAGCGGGACGGGCGCAAAGAAAACGTTCTCTTCGACAAAATCTCGG 248476 |||||||| | |||||| ||||| ||| || |||| |||||||| ||| ||| Sbjct 31217 CCATGTACGTGGTCAAGCGCGACGGCCGCCGCGAGGACGTCAAGTTCGACAAGATCACGG 31276 Query 248477 CGCGCATCAAGAAGCTCTGTTATGGTCTGGAACCCAACTTCGTCGATCATGTGGCCATCG 248536 ||||||||| |||||||| || || || | || |||| || || | | ||| Sbjct 31277 CGCGCATCACCAAGCTCTGCTACGGGCTCAACGCCGACTTTGTGGACCCGATCAAGATCT 31336 Query 248537 CCCAGAAAGTTATTTCGGGCGTCTACACCGGAGTAACAACGACAGAACTGGACACCTTAG 248596 | ||||| || | | ||||||||| | || || || ||| | || || || | | Sbjct 31337 CGCAGAAGGTCGTGGCCGGCGTCTACCCGGGCGTGACGACGTCCGAGCTCGATGAGCTCG 31396 Query 248597 CTGCGGAGACGGCGGCGTACATGGCGATTGCA-CACCCCGACTACTCGCT-GCTGGCCGG 248654 | || ||||| ||||||||| |||| ||| |||||||||| | || ||| || | Sbjct 31397 CGGCCGAGACCGCGGCGTACTGCGCGAC-GCAGCACCCCGACTT-TAGCAAGCTCGCGGC 31454 Query 248655 GAGGATCGCCGTCTCAAGGCTTCACAAAGAAACGAAAGAGTCGTTCGTCGAAACCATGG- 248713 | | ||| | |||| | || ||||| | || || || ||| || | ||| | Sbjct 31455 GCGCATCTCGATCTCGAACCTGCACAAGAACACCAACAAGCTCTTCTCGGAGAACATTGA 31514 Query 248714 ----------CTGACCTA-CA--------------TGCCTATGG-GATGGTCGCCGATGA 248747 | || | | || |||| | | || |||| || || Sbjct 31515 GCTGTTCGCGCAGAACAAGCACGAGAAGACCGGACTGCCCGCGCCGCTGATCGCAGAGGA 31574 Query 248748 CGTCCAC---ACCGTCATTCAGGACAACGCGCACCTCCTGGACGGCGCGATTGACTACGG 248804 |||| || | | |||| || |||| | ||| ||| || ||||| | ||| Sbjct 31575 CGTCTACCAGATCATCATGGAGCACAAGG---ACCGCCTCAACTCGGCGATCATCCACGA 31631 Query 248805 CAAAGATTTGGAGTACGATTTCTTTGCTTTCAAAACGCTGGAGAAATCGTATCTCCTCAA 248864 | || || |||||||| | ||||| ||||| ||||| ||||| |||||||||||| Sbjct 31632 CCGCGACTTTGAGTACGACTACTTTGGCTTCAAGACGCTCGAGAAGTCGTATCTCCTCCG 31691 Query 248865 AATTGATGGCAAGATCGTGGAACGAATTCAGCACATGTTGATGCGAGTGGCTGTCGGGAT 248924 | | |||||| ||| ||| || ||||| ||| | |||| || || ||||| || Sbjct 31692 CGTCGGCGGCAAGGTCGCGGAGCGTCCGCAGCAGATGATTCTGCGTGTCGCCGTCGGCAT 31751 Query 248925 TCACAAGGATGACATAGAGAGCGTGCTCGAGACGTACACCGGAATGAGTGAACGCTGGAT 248984 |||||| | ||||| || | ||||||||||||| ||| || ||| | Sbjct 31752 CCACAAGCACGACATTGACGCTGCGCTCGAGACGTACGAGTACATGTCGCAAAGCTTCTT 31811 Query 248985 GACACATGCCACACCGACGCTCTTCAACGCCGGTACCGTCAACAATCAGCTGAGCTCGTG 249044 || || || || |||||||| |||||||| || || | |||||| ||||| Sbjct 31812 CACGCACGCGACGCCGACGCTGTTCAACGCGGGCACGCCGCGCCCGCAGCTGTCGTCGTG 31871 Query 249045 CTTTCTTCTTGCCATGCAAGACGACTCTGTCGACGGCATTTATGACACGCTTAAACAGAC 249104 ||| || || |||||| | |||||||| |||| ||||| || |||||||| || ||| Sbjct 31872 CTTCCTGCTCGCCATGAAGGACGACTCGATCGAGGGCATCTACGACACGCTCAAGCAGTG 31931 Query 249105 GGCGAAGATTTCTAAATTCGCGGGCGGAATCGGTCTCTCCGTCTCCAACATCCGAGCGAA 249164 ||| || || || | || ||||| ||||| || ||| ||||||||| |||| Sbjct 31932 CGCGTGCATCTCCAAGTGGGCTGGCGGCATCGGCGTCAGCGTGCACAACATCCGCGCGAC 31991 Query 249165 GGGTTCGTACATCAAAGGTACAAATGGGGTCAGTGAT-GGTATCGTACCCCTCCTTCGAT 249223 | ||||||||| || || || || || || || |||| ||| | || || Sbjct 31992 GAACTCGTACATCCGCGGCACGAACGGC-TCGTCGAACGGCCTCGTGCCCATGCTGCGCG 32050 Query 249224 GCTTTGAGTCCACCGCCAGGTTCATCAACCAGGCCGGGCGC---CGAAAGGGGTCGTTCG 249280 ||| | ||| || | | | || |||||| ||| || || ||||| ||||||| Sbjct 32051 TCTTCAACGACACGGCGCGCTACGTCGACCAGGGCGGCGGCAAGCGCAAGGGCTCGTTCG 32110 Query 249281 CCATGTATTTGGAAGTGTGGCACGCCGATATATTGGAGTTCCTGGACTTGAAAAAGAACA 249340 | ||||| |||| |||||||||||| || || |||||||||||| | || |||||| Sbjct 32111 CGATGTACCTGGAGCCGTGGCACGCCGACATCTTCGAGTTCCTGGACCTCAAGAAGAACC 32170 Query 249341 ACGGCAACGAGCTCATGAGAGCGCGTGACCTCTTCTACGGCCTGTGGGTCTCCGACTTGT 249400 ||||||||||||| | |||||||| |||||||||| ||||| || |||| | | Sbjct 32171 ACGGCAACGAGCTGCACCGCGCGCGTGATCTCTTCTACGCGATGTGGATCCCCGATCTCT 32230 Query 249401 TCATGCGCCGCGTCAAGGCCGACGGCGATTGGACGCTTCTTTCTCCGTCCGACGCCCCGG 249460 ||||| |||||| ||||| ||||||| |||| || | | ||| ||| || |||| Sbjct 32231 TCATGAAGCGCGTCGAGGCCAACGGCGAGTGGAGCCTGTTCTGCCCGAACGAGGCGCCGG 32290 Query 249461 ACCTC--ATCGATCTACACGGCGCCGACTTCGACCAAGC-CTATA--AGAAATACGAATC 249515 ||| ||| | |||| ||| |||| | || || || | | ||||| Sbjct 32291 GGCTCTACACGACGT--GGGGCGACGAGTTCG---AGGCGCTGTACCACCAGTACGAGCG 32345 Query 249516 CAACGGCATCG---GCAAGACAATCAAGGCTCGGACCCT---TTTTGCGAAGGTGGTGGA 249569 | | ||| || ||||||| ||| || | | || || |||| | | || Sbjct 32346 CGAGGGCCGCGCGCGCAAGACGATCCGCGCGCAGCAGCTCTGGTTCGCGA---TCCTCGA 32402 Query 249570 GTCCCAGATAGAGACAGGGGGGCCGTATTATTTGTTCAAAGACGCGTGCAACGCCAAGAG 249629 ||| ||||| ||||| || |||||| ||| ||| ||| |||||||| |||| Sbjct 32403 GTCGCAGATCGAGACGGGCACGCCGTACATGCTGTACAAGGACTCGTGCAACCGCAAGTC 32462 Query 249630 TAACCAACGGCATCTTGGTACCATCCGCTCGTCAAATCTCTG-TGCAGAGGTGATTCAAT 249688 ||||| | | | || || || ||||||||| || ||||| ||| |||||| | | | Sbjct 32463 GAACCAGCAGAACCTCGGCACGATCCGCTCGAGCAACCTCTGCTGC-GAGGTGCTCGAGT 32521 Query 249689 ACTCGTCCAAGGAGGAGATTGCCGTCTGCAACCTGGC 249725 || |||| || ||| | || || |||||||| || Sbjct 32522 ACACGTCGCCCGATGAGGTCGCGGTGTGCAACCTCGC 32558 >seq6677 Length=3368 Score = 145 bits (160), Expect = 2e-29 Identities = 259/373 (69%), Gaps = 10/373 (3%) Strand=Plus/Minus Query 254011 TGCTTTTCCACGGTCCTCCCGGAACAGGCAAGACGTCAACCATCCTGGCGCTGGCCCGAA 254070 |||| ||| | || ||||| || || ||||||||||| |||||| | || | || ||| Sbjct 3054 TGCTGTTCTATGGACCTCCAGGCACCGGCAAGACGTCGACCATCGTCGCTGTCGCGCGAC 2995 Query 254071 CCCTGTTGGGC---GAGGGGAACATGAGAGAGCGCGTGCTCGAGCTGAACGCTTCTGACG 254127 || | ||| || || || | ||| | |||||||||||||| || |||| Sbjct 2994 AGCTTTACGGCCCCGACTTCCGCAAGAACGGGCGGTTTCTCGAGCTGAACGCCTCGGACG 2935 Query 254128 AACGCGGGTTGGACGTCGTCCGCGACAAGATCAAGACTTTCTCCAAGATGTCGATTTCGT 254187 | ||||| | | ||||| ||||| || |||||| ||| | || |||| | Sbjct 2934 ATCGCGGTATCAAGGTCGTGCGCGAGAAAGTCAAGAGCTTCGCGCAGGGCGCGATCA-GC 2876 Query 254188 CGTTCCAACCCGGCTGTCCGCCTTTCAAGCTCGTGATCCTGGACGAGGCGGACACCATGA 254247 | ||| ||||| ||||| |||||| || | | ||||||||||| ||| | |||| Sbjct 2875 AGCTCCT--CCGGCATGCCGCCGTTCAAGATCATCGTGCTGGACGAGGCCGACTCGATGA 2818 Query 254248 CGGCCGACGCGCAGTCCGCCCTCCGCCGAACGATGGAGACGCACTCCGTTGTGACGCGTT 254307 | | ||| |||||||| || || || || | |||||| | ||||| || ||||| | Sbjct 2817 CAGGCGATGCGCAGTCGGCGCTGCGTCGCATGATGGAAAACTACTCCAAGGTCACGCGCT 2758 Query 254308 TTTGCCTGGTGTGCAACTACGT--GTCGAAGATCATCGCCCCGCTGGCTTCTCGGTGCGC 254365 | ||||| | || |||||||| |||| | |||| | ||| | || || || ||||| Sbjct 2757 TCTGCCTCATTTGTAACTACGTCAGTCGCA--TCATTGAGCCGATCGCGTCGCGTTGCGC 2700 Query 254366 CAAGTTTCGATTC 254378 ||||||||||||| Sbjct 2699 CAAGTTTCGATTC 2687 >seq6188 Length=1366 Score = 96.9 bits (106), Expect = 7e-15 Identities = 147/204 (72%), Gaps = 4/204 (2%) Strand=Plus/Minus Query 157244 ACCCCGGGCTTGCTGTACTCGGCCACTCTATTCTCAAAAAAGTTGGTCTTTCCCTGGAGA 157303 || |||| |||| ||||||| |||| | ||||| || ||||||||||| |||||||| Sbjct 227 ACGCCGGCCTTGGAGTACTCGCCCACGCGCTTCTCGAAGAAGTTGGTCTTGCCCTGGAGC 168 Query 157304 GAAATCATGTCCATCCACTCGAATGGGTTGGCGCAGTTGTACACCTTGTCGTACCCCAGC 157363 || |||||||||||||| ||||| ||||| | ||||| | |||| || || ||| Sbjct 167 GAGATCATGTCCATCCAGTCGAACGGGTTCGACACCTTGTAGATCTTGGCG-ACACCAAG 109 Query 157364 TG-GTTCAGCCAGTAGTCCGCCACA-AACTTGATGTACTCTGTCATGCTCTTCTCGCTGA 157421 || || || || | || |||| |||| ||||||| |||| | | | | | Sbjct 108 TGCGTGGAG-GAGGCGATCGGCACAGAACTCAATGTACTGGCACATGAGCGACGAGTTCA 50 Query 157422 TACCGATGAGCGCGACGGGAAGCG 157445 | ||||| ||| |||| ||||||| Sbjct 49 TGCCGATCAGCTCGACCGGAAGCG 26 >seq4347 Length=93765 Score = 87.8 bits (96), Expect = 4e-12 Identities = 396/609 (65%), Gaps = 24/609 (4%) Strand=Plus/Plus Query 157244 ACCCCGGGCTTGCTGTACTCGGCCACTCTATTCTCAAAAAAGTTGGTCTTTCCCTGGAGA 157303 || |||| ||| ||||||| | || | ||||| || ||||||||||| |||||||| Sbjct 72421 ACGCCGGCCTTAGAGTACTCGCCAACGCGCTTCTCGAAGAAGTTGGTCTTGCCCTGGAGC 72480 Query 157304 GAAATCATGTCCATCCACTCGAATGGGTTGGCGCAGTTGTACACCTTGTCGTACCCCAGC 157363 || |||||||||||||| || || ||||| | ||||| | |||| || || ||| Sbjct 72481 GAGATCATGTCCATCCAGTCAAACGGGTTCGACACCTTGTAAATCTTGGCGACACCAAGC 72540 Query 157364 TGGTTCAGCCAGTAGTCCGCCACA-AACTTGATGTACTCTGTCATGCTCTTCTCGCTGAT 157422 || || || | || | || |||| |||||||| |||| | | | | || Sbjct 72541 GCGTGGAG-GAGGCGATCGGCGCAGAACTCGATGTACTGGCACATGAGCGACGAGTTCAT 72599 Query 157423 ACCGATGAGCGCGACGGGAAGCGCCGACGAAATGAATTCGCACTCAA-CGCTAACAGCGT 157481 ||||| ||| |||| ||||||| | | ||| || ||||| ||| || || | Sbjct 72600 GCCGATCAGCTCGACCGGAAGCGAGTCCTGGACGAACTCCTTCTCAATCGC-GACGGCAT 72658 Query 157482 GCTTGAA-AATTTCATGAACTCTCTCCCGCGGCAGCCTATTCTTGAGATGCTTGTAGATG 157540 | ||| || ||||| | | | | ||| ||| || |||| | ||||| || Sbjct 72659 -CGCGAATGATCTCATGGATGCGCGACTCCGGGAGC---TTGTTGACAAGCTTGGAGTAC 72714 Query 157541 AGAACGGAAGC--CGTGGC-GTGAAGTCCTTCGTCTCTGGCGATGAGAGAGTTCGCGAAC 157597 || | | |||| || || ||| || || || || | | |||||| ||||| ||| Sbjct 72715 AGCAGGCAAGCGAAGTCGCAGTGGAGGCCCTCATCGCGCGAGATGAGCTCGTTCGAGAAG 72774 Query 157598 GACAAACC---CTTGA-ACTTCTGCCGCTTCTTCAGCCAGTAGATGGCGCAGAACGACCC 157653 | || | ||| || |||||||| |||||| |||||| ||||||||| || Sbjct 72775 CTGAGGCCAGGCATGAGAC----CACGCTTCTTGAGCCAGAAGATGGAGCAGAACGAGCC 72830 Query 157654 ACTGAACTGCACGCCCTCCA-GACAGGTGAAGCCGACTAGCCTCTCCGCGAGTGAAGCG- 157711 ||| | |||||| | | || | ||| |||| | | ||| || | | ||| Sbjct 72831 CGAGAAGAAAATGCCCTCAACGGCA-GCGAACGCGACAATGCGCTCAGCAAAAGCCGCGC 72889 Query 157712 GTTTCGGGGTTCATCCACTTCTCTGCCCAGAGCGCCTTCTTTTCGATGATTGGCATCGTC 157771 | || | || |||||| |||||| |||||||||| | | | ||| || ||| Sbjct 72890 GGCGCGAGTCGCA-CCACTTGAGCGCCCAGTGCGCCTTCTTCTGCACGCATGGAATGGTC 72948 Query 157772 TGGATAGATCGCATGACGTGTCTCTGCTCTTCCGTGTCCCTGAAGTAAGTCTGAATAAGC 157831 | ||| | || | || ||| ||| ||| | |||| ||| ||| || | ||| ||| Sbjct 72949 TCGATGGCGCGGAGGAGGTGGTTCTTCTCCGTCTGGTCCTTGATGTACGTGTCAATGAGC 73008 Query 157832 AGAGAGTAC 157840 || |||||| Sbjct 73009 AGCGAGTAC 73017 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1073642691373056