Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pythium_20insidiosum_20[genbank_20GCA_5F000764265.1_202014-10-06] 8,992 sequences; 45,609,708 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq3132 509 1e-139 seq1220 136 4e-27 seq2702 116 3e-21 >seq3132 Length=41768 Score = 509 bits (564), Expect = 1e-139 Identities = 1274/1907 (67%), Gaps = 42/1907 (2%) Strand=Plus/Minus Query 22099 GGCGGTCTTGTCCACTGTAAACTGTATGGCGTTTGCGGCCGGTTTGGTGCGAAGATAATA 22158 ||| | |||||| || || ||||| || |||| || |||| ||||| || || || Sbjct 33489 GGCCGCCTTGTCGACCGTGAACTGAATCGCGTCGGCCTTCGGTCGCGTGCGCAGGTAGTA 33430 Query 22159 CATGCCCGTCTTCAGACCCATCTTCCACGCGTAAAAATGTATCGACGTCAATTTTCCATA 22218 |||||||||||| |||||| ||||||||||||| || || || ||||||| || | Sbjct 33429 CATGCCCGTCTTGAGACCCTTCTTCCACGCGTAGAAGTGCATGGACGTCAGCTTGCTGAT 33370 Query 22219 ACTCGGCAAGTCCATGTACACATTGAACGACTGACTCTGATCGATAAACGCTCCTCGATC 22278 ||||| | |||| ||| |||| |||||| ||||| ||| | || || || || Sbjct 33369 CGTCGGCTCCGCGATGTGCACGTTGAGCGACTGGCTCTGGCAGATGTAGGCGCCGCGGTC 33310 Query 22279 GGCGGCCATATTTATCAATGTACGCATCGACATTTCCCATACGGTCTTGTACAGTTGCCT 22338 ||||||||| | | || | | | || ||||| |||||||||||| | | | Sbjct 33309 GGCGGCCATGTCGAGCACGGCCTTCTGCTTGATCTCCCACACGGTCTTGTACTTCTCCTT 33250 Query 22339 GATCTCTAACGGTATCGATTCGATCCT-CTGGACGGACCCGTTATTGTGTATGATCAAAT 22397 | | ||| ||| | || | | ||| || || |||| | ||| | |||| | Sbjct 33249 CACGGCGTCCGGGATC-ACGCGCACGTTCTGCACCGAGCCGTGGTCGTGGAGGATCTGGT 33191 Query 22398 TTTTAA--TCGTATCGTTCCACAAACCGATGGCGGTCAAATCTTTGACCAGATGACGGTT 22455 | | ||| ||| ||| | |||| || | | || || | || | ||| Sbjct 33190 TGCGCACCTCGGG-CGT-CCAGATGCCGAGCTCGATGAGCTCCTTCATGAGGTACTTGTT 33133 Query 22456 CACCA-CTTGAAACTCGCCGGACAAGACGCGGCGTTGGTAAATGTTGGATGTGAACGGTT 22514 ||| | | |||| |||||| | | |||||||| | ||| ||||||| |||||||| | Sbjct 33132 CACGATCGTGAA-CTCGCCAGCGAGCACGCGGCGGTTGTACATGTTGGTCGTGAACGGCT 33074 Query 22515 CGAAAGATTCATTGTTTCCCAGTATCTGAGCGGTCGAAGCGGTCGGCATCGGCGCCAACA 22574 ||| || || ||||| || || ||||| |||||||| || |||||||||||||| | || Sbjct 33073 CGATCGACTCGTTGTTGCCGAGGATCTGCGCGGTCGACGCCGTCGGCATCGGCGCGAGCA 33014 Query 22575 GTAGCGAGTTTCTCAAGCCGTGCTTTGAAATTTTACTCTTGAGCATCGACCAGTCCCACA 22634 | |||||||| | || ||||| || | | | ||||||| | ||||||||| | Sbjct 33013 GCAGCGAGTTGCGCACGCCGTACTGCGCGACGCTCGCCTTGAGCGCGGCCCAGTCCCAGA 32954 Query 22635 GATCGGA---CGGCGTCACATTGTCCCACATATCGTATTGCAACACGCCGCGACTCGCCG 22691 || | || |||||| || | ||||||| ||| | || || | ||| ||| | | Sbjct 32953 GACCCGACGTCGGCGTGAC---GCCCCACATGTCGAACTGGAAGATGCCCTTGCTCACGG 32897 Query 22692 GGCTGCCTTCGTACGTTTCGTACGGACCATATATCGCG-GCAAGTTCGCAGC-TCGCCTC 22749 | || ||||| | ||||||| || | || || || || || || | ||||| Sbjct 32896 GCGAACCCTCGTAGCTGCCGTACGGGCCGT-GCTCCCGTGCGAGCTC-CATCGAGGCCTC 32839 Query 22750 CAACGCGCCGTAATATATAGTCTCGAAGATTTTCTTGTTCAATTCGGCGGCGGCGACGCT 22809 || ||||| | || | ||||||||||| |||||||| | ||| ||| || |||| Sbjct 32838 CATAGCGCCAAAGTACAGCGTCTCGAAGATGTTCTTGTTGAGCTCGCGGGCCTCGTCGCT 32779 Query 22810 TTCGTACGGCATA-CGCATCATCACGAACGCGTCCGCCATACCCTGAACGCCTATACCGA 22868 ||| || || || | ||| | | |||||||||||| | |||||| ||||| || |||| Sbjct 32778 CTCGAAC-GCGTAGCCCATGAGGATGAACGCGTCCGCGAGACCCTGCACGCCGATGCCGA 32720 Query 22869 TCGGTCGGTTTTTCAGATT-CGACACTTTTGCCTCGGGCAAAGGATACCAATTCGAATCG 22927 |||| |||| ||| || | | | | |||||||| | || || | || ||| Sbjct 32719 TCGGGCGGTGGCGCAGGTTGCTGCGC-TCGGCCTCGGGGATCGGGTAGTAGTTGATGTCG 32661 Query 22928 ATTGTTCTGTTCAAGTTTCTGGTCACAATTTTCGTTATNNNNNNNNNNNNNTCAAAGTCG 22987 || |||||| ||| | || || | || || || | ||||| Sbjct 32660 ATGACCTTGTTCAGGTTGCGCGTGACGACCTTGGTGATGTCGTAGAGCTTCTTGAAGTC- 32602 Query 22988 TAAACGCCCGATTGT--ACAACAAACTTGTTGACGGCGATCGAGGCAAGATTGCATACGG 23045 ||| | | | || ||||||||| | ||||| || || || ||||| || | Sbjct 32601 -AAAGGTCTTGTCGTCGGTCACAAACTTGGACAGCGCGATGGACGCGAGGTTGCACACCG 32543 Query 23046 CCACCTCGTCTTTGGACGTGTACTCTACAATTTCGGTACATAGATTGCTACACTTTATCG 23105 | ||||| || ||||||||||| | | ||| || || ||||| | |||| Sbjct 32542 CGACCTCATCGGGCGACGTGTACTCGAGCACCTCGCAGCAGAGGTTGCTCGAGCGGATCG 32483 Query 23106 TGCCCAAATTGCTCTGGTTGCTTTTTCGATTGCACGAATCCTTGTAGAGCATGTACGGCG 23165 |||| | || |||||| || || |||||||| |||||||| ||||||||||||| Sbjct 32482 TGCCGAGGTTCTGCTGGTTCGACTTGCGGTTGCACGAGTCCTTGTACAGCATGTACGGCG 32423 Query 23166 TGCCCGTCTCGACCTGCGACTCGATGATCGCTCGCCACATAGTCTGAGCGTGAACACGTC 23225 |||||||||||| ||||||||||| |||||| ||| | ||| ||| | | |||| Sbjct 32422 TGCCCGTCTCGATCTGCGACTCGAGGATCGCGAACCAGAGCTGCTGCGCGCGGA-TCGTC 32364 Query 23226 GCACGTAC-CTGCCTTCTTCCTCGTACTTTTGGTACAACGCGTCAAATTCGGCACCGTAA 23284 || | | ||| || |||||||| ||||||| ||| || || ||| | || | Sbjct 32363 TTGCGCGCGCGGCCCTCGCGCTCGTACTGGTGGTACAGCGCCTCGAACTCGTCGCCCCA- 32305 Query 23285 CAGTC--GGCCAGGCCGGGCGATTGCATCGGACACATGAGACTCCACATTGAGTCATTTT 23342 ||| | || || |||| | |||| || | || |||||| || | Sbjct 32304 -CGTCGTGTAGAGCCCCGGCGCCTCGTTCGGGCAGAACAGGCTCCACTCGCCGTTGGCCT 32246 Query 23343 CAACGCGTCTCATAAAAAGATCCGGTATCCATAGAGCGTAGAACAGTTCGCGGGCGCGCA 23402 | ||||| |||| || ||||| || ||||| | |||||||| || || || ||||| Sbjct 32245 CGACGCGCTTCATGAAGAGATCGGGGATCCACATCGCGTAGAAGAGATCACGCGCGCGGT 32186 Query 23403 CCTCCTCTTTGCCGGTGTTCTTTTTCAAATCCAAAAAGTCCAACACGTCCGCATGCCACG 23462 | ||| |||||| |||||| || | |||| || || || | ||| || ||||||| Sbjct 32185 GCAGCTCGTTGCCGTGGTTCTTCTTGAGGTCCAGGAACTCGAAGATGTCGGCGTGCCACG 32126 Query 23463 GCTCGAGGTAAACGGCAAACGCGCCCGGTCTCTTATTGCCGCCCTGATCGACGTAACGGG 23522 |||| ||||| | || |||| |||| | ||| ||||||||| |||||||| || | Sbjct 32125 GCTCCAGGTACATCGCGAACGAGCCCTTGCGCTTGCCGCCGCCCTGGTCGACGTAGCGCG 32066 Query 23523 CCGTGTTGTTGTACACTCTTAGCATCGGCACGAGACCGTTGGACGCGCCGCCTACG-CCC 23581 |||||| |||| | || | ||||| |||||||| ||||| |||| |||| | || || Sbjct 32065 CCGTGTCGTTGAAGACGCGCAGCATGGGCACGAGGCCGTTCGACGAGCCG--TTCGTGCC 32008 Query 23582 GC-CACACTCGAACCTTTTGCTCGAACGTTGTGAACGTGGAAACCTATGCCTCCGCCCGA 23640 || | ||| | || || | |||||| ||| || || ||||| || || | Sbjct 32007 GCGGATGTACGAGTTCGTCGCGCGGATGTTGTGCACGCTGACGCCGATGCCGCCAGCCCA 31948 Query 23641 TTTCGATATCATCGCGCATTGTTTCAGAGTGTCGTAGATGCCCTCGATGCTGTCCTCTTT 23700 || || || |||||| || || || |||||||||||||||||||| ||| || || Sbjct 31947 CTTGGAGATGCACGCGCACTGCTTGAGCGTGTCGTAGATGCCCTCGATCGAGTCGTCCTT 31888 Query 23701 GGTCGCGACCAAGAAACACGAAGACATTTGCGCTTTGGGCGTAGCGGCCGAGAACAGTGT 23760 | |||| || ||| ||||| |||| |||| ||||| | || |||||| || Sbjct 31887 CATGGCGAGCAGGAAGCACGACGACAGCTGCGGGCGCGGCGTGCCCGCGTTGAACAGCGT 31828 Query 23761 CGGGCTGGCGTGCGTAAAGTATCCATTCGACATTAGATTGTACGTGTCGATGGCGGCATC 23820 ||| | |||||||| ||| | | | |||||| | |||||| |||| || || || Sbjct 31827 CGGCGTCGCGTGCGTGAAGAAGCTTTGCGACATGTACTCGTACGTCTCGAGCGCAGCGTC 31768 Query 23821 AATGTCCTCTCCGTGTATACCGATGGCGACGCGCATCATCATGTATTGAGGTCTCT---C 23877 |||||| | ||| || |||| |||||| |||| ||||| | || || | || | Sbjct 31767 AATGTCGTGCTTGTGGATGCCGACGGCGACACGCAGAATCATCTGCTGCGGACGCTCCGC 31708 Query 23878 GACCGTGACGCCGTTAATTTTGAACAGATATGAACGTTGCATCGTTTTAAATCCAAAATA 23937 |||| || ||||| | || ||||| || | | ||| || || ||||| || Sbjct 31707 GACCTTGCCGCCG---ACGCGGAGGAGATACGACTTCTCGAGCGTCTTGAAGCCAAAGTA 31651 Query 23938 GTCATAGTTAAAGTCACGATCGTGCACTATGGCCGAATTCAAACGGT 23984 ||| || | |||||| || ||||| | || ||||| || | |||| Sbjct 31650 GTCGTACTCAAAGTCGCGGTCGTGGATGATCGCCGAGTTGAGGCGGT 31604 >seq1220 Length=9499 Score = 136 bits (150), Expect = 4e-27 Identities = 158/213 (74%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 31192 CATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTC 31251 |||||| || ||||| ||||| ||||| ||||| |||||||| ||||||| || ||||| Sbjct 33 CATGCAGATCTTCGTGAAGACGCTGACGGGCAAGACGATCACGCTCGACGTGGAGCCGTC 92 Query 31252 CGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311 ||| |||| | ||||| |||| || ||||||||| ||| | ||||| ||||| Sbjct 93 GGACTCGATCGACAACGTCAAGCAGAAGATTCAGGACAAGGAGGGCATTCCGCCGGACCA 152 Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAA 31371 |||||| || || ||||||||||| ||| |||| ||| || || || || || Sbjct 153 GCAGCGCCTGATCTTCGCTGGCAAGCAGCTGGAGGACGGCCGCACGCTGTCGGACTACAA 212 Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGTACT 31404 ||| || || || ||||| || || ||||| || Sbjct 213 CATCCAGAAGGAGTCGACGCTGCACCTGGTGCT 245 >seq2702 Length=56295 Score = 116 bits (128), Expect = 3e-21 Identities = 165/232 (71%), Gaps = 0/232 (0%) Strand=Plus/Plus Query 31189 AAACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACC 31248 ||| ||||| || ||||| ||||||||||| ||||| |||||||| ||||||| || || Sbjct 26761 AAAGATGCAGATCTTCGTCAAGACTCTGACCGGCAAGACGATCACGCTCGACGTCGAGCC 26820 Query 31249 GTCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGA 31308 || ||||| | || | ||||| |||| || ||||||||| || | || || || Sbjct 26821 TTCGGACAGCATTGACAATGTCAAGCAGAAGATCCAGGACAAGGAGGGAATCCCTCCGGA 26880 Query 31309 CCAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTA 31368 |||||||| || || ||||| ||||| ||| | || ||| || | || || Sbjct 26881 TCAGCAGCGCCTGATCTTCGCCGGCAAGCAGCTCGAGGACGGCCGCACGCTCTCGGACTA 26940 Query 31369 TAACATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGT 31420 ||||| || || || ||||| || || ||||| || | ||| | || ||| Sbjct 26941 CAACATCCAGAAGGAGTCGACGCTCCACCTGGTGCTCCGCCTGCGTGGTGGT 26992 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445716295856640