Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pythium_20insidiosum_20[genbank_20GCA_5F000764265.1_202014-10-06] 8,992 sequences; 45,609,708 total letters Query= NC_004156.2 Length=231621 Score E Sequences producing significant alignments: (Bits) Value seq4347 170 3e-37 seq2570 123 4e-23 seq3132 113 7e-20 seq6188 89.7 8e-13 >seq4347 Length=93765 Score = 170 bits (188), Expect = 3e-37 Identities = 586/890 (66%), Gaps = 54/890 (6%) Strand=Plus/Minus Query 125022 TGGGAAATGTACAAAAAGGCTCAGGCCTCCTTTTGGACGGTCGAAGAGGTCGATCT-GTC 125080 ||| | |||||||| ||||| |||| ||| ||||| | ||| ||| ||||||| || Sbjct 73271 TGGCAGATGTACAAGAAGGCCGAGGCGAGCTTCTGGACCGCCGAGGAGATCGATCTCGTG 73212 Query 125081 CAAGGACCTGTACGATTGGGAGACTCGTTTGACTGAAACTGAGCGAGAGTTTATATCGCA 125140 || | |||| | || |||| | | | || || | ||||| | ||||| ||| Sbjct 73211 CACG-ACCTCAAGGACTGGGGCAACC---TCACGGACAACGAGCGCCACTTTATCAAGCA 73156 Query 125141 CATTTTGGCCTTCTTTGCCGGCTCCGATGGAATCGTCAACGACAATCT---GTTGACACG 125197 | | | || ||||| || | ||| || ||||||||||| || || | ||| || Sbjct 73155 CGTCCTCGCGTTCTTCGCGGCGAGCGACGGTATCGTCAACGAGAACCTCGCGATGA-AC- 73098 Query 125198 ATTCTCTCAAGAGTTGACCATTCCAGAGGTGTCGTGCTTTTACGGATTCCAAATCATGAT 125257 ||| ||| || |||| |||| | ||||| || || ||||| ||| || Sbjct 73097 -TTCAGCAGCGAGGTGCAGGTTCCTGAGGCGCGTTGCTTCTATGGCTTCCAGATCGCCAT 73039 Query 125258 TGAGAACGTGCACTCGGAAATGTACTCTACACTGATTGACATGTACATTCGCGATCCGCA 125317 ||||||| | |||||||| ||||||| || ||||||| |||||| || | | Sbjct 73038 TGAGAACATCCACTCGGAGGTGTACTCGCTGCTCATTGACACGTACATCAAGGACCAG-- 72981 Query 125318 ACGTAAAC--ACATGCTCTTTAACGCAATCGACACGGTGCCGTCTATACGTAAAAAGGCT 125375 ||| | | || ||| | ||| ||||| || | || | | | || ||||| Sbjct 72980 ACGGAGAAGAACCACCTCCTCCGCGCCATCGAGACCATTCCATGCGTGCAGAAGAAGGCG 72921 Query 125376 CAATGGGTGATTCGGTGGATCGA-TGACGACAAGTCTTCGTACGCCGACAGACTGGTGGC 125434 || |||| | | |||| ||| | || | | | | | || || | | || || Sbjct 72920 CACTGGGCGCTCAAGTGGTGCGACTCGCGCCGCG-CGGCTTTTGCTGAGCGCATTGTCGC 72862 Query 125435 ATTCGCCGCCGTAGAGGGCATCTTCTTTTCGGG-TAGTTTTGCGGCCATCTTTTGGCTCA 125493 ||||| ||||| |||||||| ||||| ||||| | ||| ||| ||||||| ||||||| Sbjct 72861 GTTCGCTGCCGTTGAGGGCATTTTCTTCTCGGGCTCGTTCTGCT-CCATCTTCTGGCTCA 72803 Query 125494 AGAAGCGCGGACTCATGCCCGGACTGACGCACAGTAACGAGTTTATATCTCGAGACGAGG 125553 ||||||| || |||||||| || || | | |||||| | || || || || |||| Sbjct 72802 AGAAGCGTGGTCTCATGCCTGGCCTCAGCTTCTCGAACGAGCTCATCTCGCGCGATGAGG 72743 Query 125554 GCCTACACTGTGACT----TTGCC-ATTCTACT----GTTTCGCAACTATCTGCGTCCCG 125604 |||| ||||| |||| ||||| | |||| | || |||| | || || | Sbjct 72742 GCCTCCACTGCGACTTCGCTTGCCTGCTGTACTCCAAGCTTGTCAACAA---GCTCCCGG 72686 Query 125605 AGT-GCAGATCCAGCGATGAAAAGGTCATCAACATTGTAACCGATGCCGTGAGGATAGAA 125663 ||| || |||| ||| || |||| | | ||||||||| ||| || Sbjct 72685 AGTCGCGCATCC----ATG---AGATCAT-----TCG----CGATGCCGTCGCGATTGAG 72642 Query 125664 CAAGAGTTTCTAACCGAATCCCTACCGGTC-AGCATGATTGGCATGAACTGCAAGCTAAT 125722 | ||||| | || || || |||||| ||| |||| |||||||||| ||| || Sbjct 72641 AAGGAGTTCGTCCAGGACTCGCTTCCGGTCGAGC-TGATCGGCATGAACTCGTCGCTCAT 72583 Query 125723 GTGCGAGTACATAGAGTTTGTGGCAGATCGTCTACTGTACGAGTTGATTGGCCGCAAGAT 125782 |||| ||||||| ||||| || ||||| || || ||| | | || | |||||| Sbjct 72582 GTGCCAGTACATCGAGTTCTGCGCCGATCGCCTCCTCCACGCGCTTGGTGTCGCCAAGAT 72523 Query 125783 TTACAACGCCAAGAATCCCTTTGATTTCATGACCAGCATATCACTAGAGGGTAAGACCAA 125842 |||||| | ||| || ||||| | ||| || || || || |||| |||||||| Sbjct 72522 TTACAAGGTGTCGAACCCGTTTGACTGGATGGACATGATCTCGCTCCAGGGCAAGACCAA 72463 Query 125843 CTTTTTCGAGAAGAAGGTCAGCGAGTA--CAAACGCTACGGTGTCGGTGT 125890 ||| ||||||||| || ||||||| | || || ||| |||||||| Sbjct 72462 CTTCTTCGAGAAGCGCGTTGGCGAGTACTCTAAGGC--CGGCGTCGGTGT 72415 >seq2570 Length=17837 Score = 123 bits (136), Expect = 4e-23 Identities = 221/319 (69%), Gaps = 8/319 (3%) Strand=Plus/Minus Query 127443 GAATCCGTGCGTCAGGTGGCCTCC-GTCGGGCAGATCGAGTCCCATGATTCTACCGTGCG 127501 ||| |||||||| ||||||||||| | |||| |||||||| |||||||| | |||||| Sbjct 11691 GAAACCGTGCGTGAGGTGGCCTCCAGACGGG-AGATCGAGACCCATGATACGGTCGTGCG 11633 Query 127502 GTTTAACGATTCCAGTGTACACGGCAAAGTTGGCCATCGAGCCCGAGTACGGTTGTACAC 127561 | | || || ||||| ||||||||||||||| ||| |||||||| || || Sbjct 11632 GGCGCAGGAGGCCCGTGTAGACGGCAAAGTTGGCCGGGCTGCCAGAGTACGGCTGGACGT 11573 Query 127562 ACACTCCCCA---TTCGGACTCGTTCAAATTGAACGCTCTGAGACATCGCTGCTGTGCTA 127618 || ||||| |||| ||| || |||| |||| |||||||| | Sbjct 11572 TGACGCCCCACTTCTCGGGGTCGAGGCCAT---ACGCCTTGAGCGCGCGCTGCTGGCAGA 11516 Query 127619 GCAGTTCGATGCGATCGATAAACTCGTTACCACCATAGTATCGCTTTCCGGGCCTACCCT 127678 || ||||| ||||||| | |||||| ||||||||||| |||| ||| ||||| Sbjct 11515 TCACCTCGATCTGATCGATGACCTCGTTGCCACCATAGTAGCGCTGGTGCGGCAGACCCT 11456 Query 127679 CCGAGTACTTGTTGATGAGACACGAACTCATGCATTCTCGCACCGGTAGAGTGGTAAAGT 127738 | | |||||||||| | || ||||| | || || || || | | | ||| |||| Sbjct 11455 CGGCGTACTTGTTGGTCAGGCACGAGCCCAGACACTCCATGACGGCGCGCGAGGTGAAGT 11396 Query 127739 TTTCCGATGCGATCAACTC 127757 | || || || |||| ||| Sbjct 11395 TCTCGGACGCAATCAGCTC 11377 >seq3132 Length=41768 Score = 113 bits (124), Expect = 7e-20 Identities = 133/180 (74%), Gaps = 0/180 (0%) Strand=Plus/Plus Query 98040 TACAAGACTGTCTGGGAGATTCCGACCAAGACGCTGATCGATATGGCTGCCGACAGAGGT 98099 |||||||| || |||||||| | ||| | || |||| ||||| |||||| | || Sbjct 33259 TACAAGACCGTGTGGGAGATCAAGCAGAAGGCCGTGCTCGACATGGCCGCCGACCGCGGC 33318 Query 98100 GTCTACATTGACCAGAGTCAATCGTTCAATCTGTACGTTGCCGAGCCCACCTACAGTCGT 98159 | |||||| |||||| || ||| |||| || || | || ||||| || ||| Sbjct 33319 GCCTACATCTGCCAGAGCCAGTCGCTCAACGTGCACATCGCGGAGCCGACGATCAGCAAG 33378 Query 98160 ATGACTTCGATACACTTTTACGCATGGAACAAGGGCCTCAAGACGGGCATGTACTATCTG 98219 |||| || || ||||| ||||| ||||| ||||| |||||||||||||||||||| ||| Sbjct 33379 CTGACGTCCATGCACTTCTACGCGTGGAAGAAGGGTCTCAAGACGGGCATGTACTACCTG 33438 >seq6188 Length=1366 Score = 89.7 bits (98), Expect = 8e-13 Identities = 156/217 (72%), Gaps = 10/217 (5%) Strand=Plus/Plus Query 125679 GAATCCCTACCGGTC-AGCATGATTGGCATGAACTGCAAGCTAATGTGCGAGTACATAGA 125737 || || || |||||| ||| |||| |||||||||| ||| |||||| ||||||| || Sbjct 22 GACTCGCTTCCGGTCGAGC-TGATCGGCATGAACTCGTCGCTCATGTGCCAGTACATTGA 80 Query 125738 GTT-TGTGGCAGATCGTCTACTGTACG-AGTTGATTGGCCGCAAGATTTACAACGCCAAG 125795 ||| |||| | ||||| || || ||| | ||| | | | |||||| ||||| | | Sbjct 81 GTTCTGTGCC-GATCGCCTCCTCCACGCACTTGGT-GTCGCCAAGATCTACAAGGTGTCG 138 Query 125796 AATCCCTTTGATTTCATGACCAGCATATCACTAGAGGGTAAGACCAACTTTTTCGAGAAG 125855 || || || || | ||| || || || || |||| ||||||||||| ||||||||| Sbjct 139 AACCCGTTCGACTGGATGGACATGATCTCGCTCCAGGGCAAGACCAACTTCTTCGAGAAG 198 Query 125856 AAGGTCAGCGAGTA--CAAACGCTACGGTGTCGGTGT 125890 || ||||||| | || || ||| |||||||| Sbjct 199 CGCGTGGGCGAGTACTCCAAGGC--CGGCGTCGGTGT 233 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 740975904945920