Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pythium_20insidiosum_20[genbank_20GCA_5F000764265.1_202014-10-06] 8,992 sequences; 45,609,708 total letters Query= NC_006639.1 Length=24748 Score E Sequences producing significant alignments: (Bits) Value seq2055 178 2e-40 seq8447 170 3e-38 seq1927 138 2e-28 seq6789 134 2e-27 >seq2055 Length=4818 Score = 178 bits (196), Expect = 2e-40 Identities = 208/280 (74%), Gaps = 1/280 (0%) Strand=Plus/Plus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||| |||||||| |||| |||||| || |||||||| || ||||||||||| || || Sbjct 3818 CGCCAAGCGTCACCGCAAGGTTCTTCGCGACAACATCCAGGGTATCACCAAGCCCGCCAT 3877 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||| ||||| ||||| |||||||| || |||||| |||| || | |||| || |||| Sbjct 3878 CCGCCGTCTCGCTCGCCGTGGTGGCGTGAAGCGTATCTCCGGCCTCATCTACGAGGAGAC 3937 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 ||| | ||| | ||| ||||||| ||| ||| |||| || | || ||||| || Sbjct 3938 TCGCGGTGTCCTCAAGGTCTTCCTTGAGAACGTCATCCGCGACTCGGTCACGTATACGGA 3997 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 ||| || || |||||||||||| |||||||| |||| || || |||| ||||| || Sbjct 3998 GCATGCCCGTCGCAAGACTGTCACCGCCATGGATGTCGTGTACGCTCTGAAGCGTCAGGG 4057 Query 16672 CCGTAAGATTTATGGTTTTGGAAGTT-AATCTTCTAATCA 16710 ||||| | || || || || ||| ||||||| |||| Sbjct 4058 CCGTACCCTCTACGGCTTCGGCGGTTAAATCTTCGTATCA 4097 >seq8447 Length=93380 Score = 170 bits (188), Expect = 3e-38 Identities = 202/274 (74%), Gaps = 0/274 (0%) Strand=Plus/Minus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||| |||||||| |||| |||||| || |||||||| || ||||||||||| ||||| Sbjct 8661 CGCCAAGCGTCACCGCAAGGTTCTTCGCGACAACATCCAGGGTATCACCAAGCCTGCTAT 8602 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||| ||||| ||||||||||| || ||||||||| |||| || || |||| || |||| Sbjct 8601 CCGCCGTCTCGCTCGTCGTGGCGGTGTCAAGCGTATCTCGGGTCTGATCTACGAGGAGAC 8542 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 || | || | ||| ||||||| ||| ||| |||| ||| | | ||| || || Sbjct 8541 GCGCGGCGTGCTCAAGGTCTTCCTTGAGAACGTCATCCGTGACTCGGTGACCTACACGGA 8482 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 |||||| || ||||| ||||| ||||||| |||| || || | || ||||| || Sbjct 8481 GCACGCGCGCCGCAAGACGGTCACGGCCATGGACGTCGTGTACGCGCTCAAGCGTCAGGG 8422 Query 16672 CCGTAAGATTTATGGTTTTGGAAGTTAATCTTCT 16705 ||| | | | || ||||| || ||||| | ||| Sbjct 8421 CCGCACGCTCTACGGTTTCGGTGGTTAAGCGTCT 8388 >seq1927 Length=27316 Score = 138 bits (152), Expect = 2e-28 Identities = 195/274 (71%), Gaps = 0/274 (0%) Strand=Plus/Plus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||| ||||| ||||||| ||||| || |||||||| || ||||| ||||| || || Sbjct 6952 CGCCAAGCGCCATCGCAAGGTGCTTCGTGACAACATCCAGGGCATCACGAAGCCGGCGAT 7011 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||| ||||| ||||| || ||||| |||||||| || || | |||| || |||| Sbjct 7012 CCGCCGTCTCGCTCGCCGAGGTGGTGTCAAGCGCATCAGCGGTCTCATCTACGAGGAGAC 7071 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 || | ||| | ||| | |||||| ||| ||| |||| ||| | || || || || Sbjct 7072 CCGCGGTGTGCTCAAGGTGTTCCTCGAGAACGTGATCCGCGATTCGGTCACGTACACGGA 7131 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 |||||| || ||||||||||| | |||||| ||||||| || | || || || || Sbjct 7132 GCACGCGCGCCGCAAGACTGTCACGGCGATGGATGTCGTCTACGCGCTCAAGCGACAGGG 7191 Query 16672 CCGTAAGATTTATGGTTTTGGAAGTTAATCTTCT 16705 || | | | || || ||||| ||||| | ||| Sbjct 7192 ACGCACGCTCTACGGCTTTGGTGGTTAAGCGTCT 7225 >seq6789 Length=2563 Score = 134 bits (148), Expect = 2e-27 Identities = 194/274 (71%), Gaps = 0/274 (0%) Strand=Plus/Plus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||| ||||| ||||||| ||||| || |||||||| || ||||| ||||| || || Sbjct 54 CGCCAAGCGCCATCGCAAGGTGCTTCGTGACAACATCCAGGGCATCACGAAGCCGGCGAT 113 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||| ||||| ||||| || ||||| |||||||| || || | |||| || |||| Sbjct 114 CCGCCGTCTCGCTCGCCGAGGTGGTGTCAAGCGCATCAGCGGTCTCATCTACGAGGAGAC 173 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 || | ||| | ||| | |||||| ||| ||| |||| ||| | || || || || Sbjct 174 CCGCGGTGTGCTCAAGGTGTTCCTCGAGAACGTGATCCGCGATTCGGTCACGTACACGGA 233 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 ||| || || ||||||||||| | |||||| ||||||| || | || || || || Sbjct 234 GCATGCGCGCCGCAAGACTGTCACGGCGATGGATGTCGTCTACGCGCTCAAGCGACAGGG 293 Query 16672 CCGTAAGATTTATGGTTTTGGAAGTTAATCTTCT 16705 || | | | || || ||||| ||||| | ||| Sbjct 294 ACGCACGCTCTACGGCTTTGGTGGTTAAGCGTCT 327 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 79066978551456