Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pythium_20insidiosum_20[genbank_20GCA_5F000764265.1_202014-10-06] 8,992 sequences; 45,609,708 total letters Query= NC_007346.1 Length=407339 Score E Sequences producing significant alignments: (Bits) Value seq3132 414 3e-110 seq5045 104 6e-17 seq2601 104 6e-17 >seq3132 Length=41768 Score = 414 bits (458), Expect = 3e-110 Identities = 1080/1630 (66%), Gaps = 34/1630 (2%) Strand=Plus/Plus Query 363547 TTCACGCACGCCACGCCAACAATGTACAATGCTGGAACTCGTAATCCACAGATGTCTTCT 363606 ||||||||||| ||||| || ||| ||| || || || | || ||| |||| || Sbjct 31810 TTCACGCACGCGACGCCGACGCTGTTCAACGCGGGCACGCCGCGCCCGCAGCTGTCGTCG 31869 Query 363607 TGCTTTCTTCTAAAAATGAAGGACGATTCCATCGAGGGTATCTTTGACACACTTAAGAAT 363666 ||||| || || ||||||||||| || |||||||| |||| ||||| || ||| | Sbjct 31870 TGCTTCCTGCTCGCCATGAAGGACGACTCGATCGAGGGCATCTACGACACGCTCAAGCAG 31929 Query 363667 TGTGCTCTTATTTCCAAGAATGCAGGCGGAATTGGTGT-ATCGATCCACAATGTTCGTGC 363725 || || || |||||| || ||||| || || || | || | ||||| | || || Sbjct 31930 TGCGCGTGCATCTCCAAGTGGGCTGGCGGCATCGGCGTCAGCG-TGCACAACATCCGCGC 31988 Query 363726 ACAGAACAGTTACATTCGCGGCACAGGGGGATACTCGAATGGGCTGGTTCCCATGCTTCG 363785 |||| ||||| |||||||| || | ||||| || || || |||||||| || Sbjct 31989 GACGAACTCGTACATCCGCGGCACGAACGGCTCGTCGAACGGCCTCGTGCCCATGCTGCG 32048 Query 363786 TGTGTTTGACAATACTGCGAGGTACGTCGACCAGGGTGGAGGAAAGCGCAAAGGGGCGTT 363845 || || || | || ||| | |||||||||||||| || || |||||||| || |||| Sbjct 32049 CGTCTTCAACGACACGGCGCGCTACGTCGACCAGGGCGGCGGCAAGCGCAAGGGCTCGTT 32108 Query 363846 TGCTATGTATCTCGAGCCTCATCATGCCGATATTTTTGAGTTTCTTGAGCTCCGGAAAAA 363905 || ||||| || ||||| || ||||| || || ||||| || || ||| ||| || Sbjct 32109 CGCGATGTACCTGGAGCCGTGGCACGCCGACATCTTCGAGTTCCTGGACCTCAAGAAGAA 32168 Query 363906 CACGGGAAAAGAGGAATTGCGTGCACGTGATCTGTTCTATGCACTTTGGGTTTCTGACCA 363965 | || || ||| || || |||||||| ||||| || | ||| | | || | Sbjct 32169 CCACGGCAACGAGCTGCACCGCGCGCGTGATCTCTTCTACGCGATGTGGATCCCCGATCT 32228 Query 363966 TTTTATGAAGCGCGTGGAGGC---AGGTAAGAATTGGTCACTCTTTTGCCCACACGAATG 364022 || ||||||||||| ||||| || || ||| || || ||||| |||| Sbjct 32229 CTTCATGAAGCGCGTCGAGGCCAACGGCGAG---TGGAGCCTGTTCTGCCCGAACGAGGC 32285 Query 364023 TCCAGG--TCTTTCCGATGTATGGGGTGACGACTATGTTGCTCTATACGAAAAGTATGAA 364080 || || ||| ||| | ||||| ||||| | | || || ||| | |||| || Sbjct 32286 GCCGGGGCTCTACACGACG--TGGGGCGACGAGTTCGAGGCGCTGTACCACCAGTACGAG 32343 Query 364081 TCGGAGGGAAAGGCTCGTAAGACAATTCCCGCACAGAAGCTATGGTTTGCCATCATGGAT 364140 ||||| || || ||||| || | ||| ||| |||| ||||| || ||| | || Sbjct 32344 CGCGAGGGCCGCGCGCGCAAGACGATCCGCGCGCAGCAGCTCTGGTTCGCGATCCTCGAG 32403 Query 364141 TCGCAGATTGAGACAGGAACACCCTATATGTTGTACAAAGATTCGTGCAACCGCAAGTCC 364200 |||||||| ||||| || || || || ||| ||||||| || ||||||||||||||||| Sbjct 32404 TCGCAGATCGAGACGGGCACGCCGTACATGCTGTACAAGGACTCGTGCAACCGCAAGTCG 32463 Query 364201 AACCAGCAGCACCTTGGTACAATTCAGCAGAGCAACCTATGTACCGAGATTATTGAATAC 364260 ||||||||| |||| || || || | ||||||||| || |||| | | || ||| Sbjct 32464 AACCAGCAGAACCTCGGCACGATCCGCTCGAGCAACCTCTGCTGCGAGGTGCTCGAGTAC 32523 Query 364261 ACCGCTCCCGACGAGACTGCCGTATGTAACCTTGCGTCGATCGCGCTTCCGGCGTTTGTA 364320 || | ||||| ||| || || || ||||| ||||| |||||||| | |||||| Sbjct 32524 ACGTCGCCCGATGAGGTCGCGGTGTGCAACCTCGCGTCCATCGCGCTGTCCAAGTTTGTG 32583 Query 364321 A---AAGATGGTACTTTTGACCACCAGCATCTTTATGACGTAACCTATCATGCTACTTGC 364377 | | || || |||||| | || | || || ||| | ||| | | || || Sbjct 32584 ACCGACGACAAGACCTTTGACTTCAAGAAGCTCTACGACATCACCAAGGTCGTCACGCGC 32643 Query 364378 AATCTCGACAAGGTTATCGACAAGAATTATTATCCAATTCCTGAAGCCGAGCGTTCTAAT 364437 || || ||||||| ||||||| || || || || || || || |||||||| || Sbjct 32644 AACCTGAACAAGGTCATCGACATCAACTACTACCCGATCCCCGAGGCCGAGCGCAGCAAC 32703 Query 364438 ATGCGTCATCGCCCGATTGGTCTTGGTGTACAGGGCCTCGCTGACGTTTTTATGATGCTC 364497 |||| || |||||||| || | || || ||||| ||||| |||| | | || ||| Sbjct 32704 CTGCGCCACCGCCCGATCGGCATCGGCGTGCAGGGTCTCGCGGACGCGT---TCATCCTC 32760 Query 364498 AAG---ATGGCATTTGA-TTCGCCTGACGCTCGTGTTCTAAATAAGGAGATCTTTGAAAC 364553 | | || || || || | || || || | || || ||| | ||||| || || Sbjct 32761 ATGGGCTACGCGTTCGAGAGCGAC-GAGGCCCGCGAGCTCAACAAGAACATCTTCGAGAC 32819 Query 364554 AATGTATTTTGCCGCAATGACTGCTTCGTGTGATTTGGCAAAAACCAAGGGAAAGTACTC 364613 |||| |||| ||| ||| || ||| || | ||| | || |||| Sbjct 32820 GCTGTACTTTGGCGCTATGGAGGCCTCGATGGAGCTCGCACGGGAGCACGGCCCGTACGG 32879 Query 364614 TACTTATGAGGGGTCCCCTCTTTCGC-AGGGAAAATTCCAGTTTGATCTATGGAATGTCA 364672 | || ||||| || || | | || |||| | |||||||| || | ||| |||| Sbjct 32880 CAGCTACGAGGGTTCGCC-CGTGAGCAAGGGCATCTTCCAGTTCGACATGTGGGGCGTCA 32938 Query 364673 CGC---CATCTGTCCGATGGAACTGGGATACGCTACGTTCCAACGTTAAGAAGCATGGTA 364729 ||| | || | | ||| |||||| |||| | | ||| | || | || Sbjct 32939 CGCCGACGTCGGGTCTCTGGGACTGGGCCGCGCTCAAGGCGAGCGTCGCGCAGTACGGCG 32998 Query 364730 CTCGCAACTCCCTCGTTACAGCGCCCATGCCCACGGCTTCTACTGCACAGATCCTCGGAA 364789 |||||||| || | ||||| ||||| ||||| || || || ||||||||||| | Sbjct 32999 TGCGCAACTCGCTGCTGCTCGCGCCGATGCCGACGGCGTCGACCGCGCAGATCCTCGGCA 33058 Query 364790 ACAACGAGTGCTTCGAACCGTTTACAAGCAATCTTTATTCACGCCGGGTTCTTTCCGGAG 364849 ||||||||| |||| ||||| || | ||| | || ||||| || || | || | Sbjct 33059 ACAACGAGTCGATCGAGCCGTTCACGACCAACATGTACAACCGCCGCGTGCTCGCTGGCG 33118 Query 364850 AATTTCCGGTAGTTAATAAGTACCTAGTCAAGGATCTTTCCGACCGCGGGCTGTGGGGTG 364909 | || || | || || |||||||| | ||||| || ||| | ||| | ||| Sbjct 33119 AGTTCACGATCGTGAACAAGTACCTCATGAAGGAGCTCATCGAGCTCGGCATCTGGACGC 33178 Query 364910 ACAGCATGAAGAACTATATCATCGCCGCTAATGGTTCTGTGCAGAACATTCCAGGATTTC 364969 | || ||| | ||| || || | || || ||||||||| | | | | | Sbjct 33179 CCGAGGTGCGCAACCAGATCCTCCACGACCACGGCTCGGTGCAGAACGTGCGCGTGATCC 33238 Query 364970 CAGAAGATCTGAAGCCTATTTACAAAACCGTATGGGAAATTTCCATGC-GAA--CTCTCA 365026 | || | ||||| | ||||| ||||| ||||| || || || ||| | | Sbjct 33239 CGGACGCCGTGAAGGAGAAGTACAAGACCGTGTGGGAGAT---CAAGCAGAAGGCCGTGC 33295 Query 365027 TTGATATGGCGGCCGATCGCGGTGCTTTTATCTGTCAGAGCCAGTCGTTTAACGTATTCA 365086 | || ||||| ||||| ||||| || | ||||| |||||||||||| | ||||| || Sbjct 33296 TCGACATGGCCGCCGACCGCGGCGCCTACATCTGCCAGAGCCAGTCGCTCAACGTGCACA 33355 Query 365087 TGACTCAGCCAACCTCCGCCAAGCTTACATCCATGCATTTCTACGGGTGGAAATCCGGTC 365146 | | |||| || | |||||| || |||||||| ||||||| |||||| |||| Sbjct 33356 TCGCGGAGCCGACGATCAGCAAGCTGACGTCCATGCACTTCTACGCGTGGAAGAAGGGTC 33415 Query 365147 TTAAGACAGG 365156 | ||||| || Sbjct 33416 TCAAGACGGG 33425 >seq5045 Length=16147 Score = 104 bits (114), Expect = 6e-17 Identities = 319/489 (65%), Gaps = 6/489 (1%) Strand=Plus/Minus Query 111314 TTTTCCACTTCTCACAACAAAGCGAACATATTGGAAGGGAATTGTCGAAGAACTTCTGTG 111373 |||||| || ||||| || ||||| | ||| || | | || || || ||||| Sbjct 9902 TTTTCCGCTGCTCACGACCAAGCGCGTCTTCTGGCGCGGTGTCGCGGAGGAGCTGCTGTG 9843 Query 111374 GTTTATTCGCGGAAGTACAAATGCAAATGAACTTGCAGCAAAAAA-TGTAAAAATTTGGG 111432 ||| || | || ||| ||||| || || |||||| | || | | || || |||| Sbjct 9842 GTTCATCAGTGGCGATACCAATGCCAA-GACATTGCAGGACAAGGGTATCAAGATCTGGG 9784 Query 111433 ATGGAAATGGATCACGTGACTTTCTAGATTCAGTTGGTCTTGTCGACAACG--AAGAAGG 111490 |||| |||||||| || | ||||| | || || | |||| || ||| || Sbjct 9783 ATGGCAATGGATCGAAGGAATACCTAGAGAGCATCGGCCTCG--GACATCGCGAAGCTGG 9726 Query 111491 TGATCTCGGACCAGTTTACGGATTTCAATGGCGCCACTTTGGTGCAGACTACAAAACCAT 111550 |||||||||||||| || || || || |||||||||||||| || | |||| || || Sbjct 9725 CGATCTCGGACCAGTGTATGGCTTCCAGTGGCGCCACTTTGGAGCCAAGTACACGACGAT 9666 Query 111551 GCACGACTCATATGATTCACAGGGAACTGATCAATTACAGAATGTCATTGATCAAATTAA 111610 ||||| | || | |||||| ||||| | | | || || | || | || Sbjct 9665 GCACGCCGACTACTCTGGCCAGGGAGTCGATCAGCTCGCGGAGGTGATCCACAAACTCAA 9606 Query 111611 GAACAACCCAACTTCTCGTCGCATTATTATGAGTGCATGGAACCCAAATGCATTGGAAAA 111670 || ||||| | ||| ||||| || ||| ||||||||||| | | | | Sbjct 9605 GACGAACCCGAACGATCGGCGCATCATCATGTCGGCATGGAACCCTGCGGACCTCAAGGA 9546 Query 111671 AATGGCACTTCCACCATGTCATCTTATGTGCCAGTTTTATGTACACGACGGGATGCTTTC 111730 ||||| || || || || || | | ||||||||||| || | || ||| || Sbjct 9545 GATGGCGCTGCCGCCGTGCCACATGTTCTGCCAGTTTTACGTTGCGAATGGTGAGCTCTC 9486 Query 111731 ATGCCAAATGTATCAGCGATCTGCTGATATTGGTCTTGGTGTTCCGTTTAATATTGCAAG 111790 || || ||||| || || || || ||||| ||||| || || || || || || || || Sbjct 9485 CTGTCAGATGTACCAACGCTCAGCAGATATGGGTCTCGGCGTGCCATTCAACATCGCGAG 9426 Query 111791 TTACGCACT 111799 ||||| || Sbjct 9425 CTACGCGCT 9417 >seq2601 Length=2056 Score = 104 bits (114), Expect = 6e-17 Identities = 319/489 (65%), Gaps = 6/489 (1%) Strand=Plus/Minus Query 111314 TTTTCCACTTCTCACAACAAAGCGAACATATTGGAAGGGAATTGTCGAAGAACTTCTGTG 111373 |||||| || ||||| || ||||| | ||| || | | || || || ||||| Sbjct 1529 TTTTCCGCTGCTCACGACCAAGCGCGTCTTCTGGCGCGGTGTCGCGGAGGAGCTGCTGTG 1470 Query 111374 GTTTATTCGCGGAAGTACAAATGCAAATGAACTTGCAGCAAAAAA-TGTAAAAATTTGGG 111432 ||| || | || ||| ||||| || || |||||| | || | | || || |||| Sbjct 1469 GTTCATCAGTGGCGATACCAATGCCAA-GACATTGCAGGACAAGGGTATCAAGATCTGGG 1411 Query 111433 ATGGAAATGGATCACGTGACTTTCTAGATTCAGTTGGTCTTGTCGACAACG--AAGAAGG 111490 |||| |||||||| || | ||||| | || || | |||| || ||| || Sbjct 1410 ATGGCAATGGATCGAAGGAATACCTAGAGAGCATCGGCCTCG--GACATCGCGAAGCTGG 1353 Query 111491 TGATCTCGGACCAGTTTACGGATTTCAATGGCGCCACTTTGGTGCAGACTACAAAACCAT 111550 |||||||||||||| || || || || |||||||||||||| || | |||| || || Sbjct 1352 CGATCTCGGACCAGTGTATGGCTTCCAGTGGCGCCACTTTGGAGCCAAGTACACGACGAT 1293 Query 111551 GCACGACTCATATGATTCACAGGGAACTGATCAATTACAGAATGTCATTGATCAAATTAA 111610 ||||| | || | |||||| ||||| | | | || || | || | || Sbjct 1292 GCACGCCGACTACTCTGGCCAGGGAGTCGATCAGCTCGCGGAGGTGATCCACAAACTCAA 1233 Query 111611 GAACAACCCAACTTCTCGTCGCATTATTATGAGTGCATGGAACCCAAATGCATTGGAAAA 111670 || ||||| | ||| ||||| || ||| ||||||||||| | | | | Sbjct 1232 GACGAACCCGAACGATCGGCGCATCATCATGTCGGCATGGAACCCTGCGGACCTCAAGGA 1173 Query 111671 AATGGCACTTCCACCATGTCATCTTATGTGCCAGTTTTATGTACACGACGGGATGCTTTC 111730 ||||| || || || || || | | ||||||||||| || | || ||| || Sbjct 1172 GATGGCGCTGCCGCCGTGCCACATGTTCTGCCAGTTTTACGTTGCGAATGGTGAGCTCTC 1113 Query 111731 ATGCCAAATGTATCAGCGATCTGCTGATATTGGTCTTGGTGTTCCGTTTAATATTGCAAG 111790 || || ||||| || || || || ||||| ||||| || || || || || || || || Sbjct 1112 CTGTCAGATGTACCAACGCTCAGCAGATATGGGTCTCGGCGTGCCATTCAACATCGCGAG 1053 Query 111791 TTACGCACT 111799 ||||| || Sbjct 1052 CTACGCGCT 1044 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1303203440631744