Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pythium_20insidiosum_20[genbank_20GCA_5F000764265.1_202014-10-06] 8,992 sequences; 45,609,708 total letters Query= NC_008187.1 Length=191100 Score E Sequences producing significant alignments: (Bits) Value seq7148 100 3e-16 seq5583 93.3 5e-14 seq3887 93.3 5e-14 seq6130 91.5 2e-13 >seq7148 Length=46129 Score = 100 bits (110), Expect = 3e-16 Identities = 144/203 (71%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 126178 TTGGTGTAAATGTAGCGGGGAGCTGCCGAATCCTTGCCTCCCTCCAACCGCGTGCCAAAC 126237 |||||||||||||| || || | ||| | ||| || || ||| |||| || ||||| ||| Sbjct 12205 TTGGTGTAAATGTAACGAGGTGATGCTGCATCTTTACCACCCCCCAATCGAGTGCCGAAC 12146 Query 126238 TGACCGTCCGGCTCCAACAACTGCACATTGTTGGCTCCCACAAAGTCCTGCGCAAACTTG 126297 ||||||| ||| ||| | || | |||||| |||||| || || ||||| | ||| Sbjct 12145 TGACCGTTCGGAGACAAAAGATGGATGTTGTTGCTTCCCACGAAATCTTGCGCCATGTTG 12086 Query 126298 ACAATGGTCTCGCACAGGTTCTGCTCGCCGTGCTTGTAGTCGGTCTGCTCGGCCACGTAG 126357 | || || || || |||||||||| || | || | | || |||| ||| || Sbjct 12085 ATGATCGTGCCGTTGAGACTCTGCTCGCCATGGTGATAAGCAGAATGTTCGGACACATAT 12026 Query 126358 CCGCTCAGCTGCGCAACCTTGAT 126380 ||| ||||| ||||| ||||| Sbjct 12025 CCGGCAAGCTGAGCAACTTTGAT 12003 >seq5583 Length=27463 Score = 93.3 bits (102), Expect = 5e-14 Identities = 140/199 (70%), Gaps = 0/199 (0%) Strand=Plus/Plus Query 126181 GTGTAAATGTAGCGGGGAGCTGCCGAATCCTTGCCTCCCTCCAACCGCGTGCCAAACTGA 126240 ||| | |||||||| ||| || | ||||||||||||| || ||||||||||||||| Sbjct 18224 GTGAAGATGTAGCGCGGACTCGCGGCGTCCTTGCCTCCCTGCAGCCGCGTGCCAAACTGT 18283 Query 126241 CCGTCCGGCTCCAACAACTGCACATTGTTGGCTCCCACAAAGTCCTGCGCAAACTTGACA 126300 || || | | || | ||| |||||||| || || |||||||||| | ||||| Sbjct 18284 CCCGATGGATAGAGCAGCGGCAGGTTGTTGGCGCCGACGTAGTCCTGCGCCATGTTGACG 18343 Query 126301 ATGGTCTCGCACAGGTTCTGCTCGCCGTGCTTGTAGTCGGTCTGCTCGGCCACGTAGCCG 126360 || ||| | ||| | ||||||||| | ||| | || ||||| |||||| Sbjct 18344 ATCGTCGAGTGCAGCGACGCCTCGCCGTGGTGGTACGCCGTGTGCTCACTGCAGTAGCCA 18403 Query 126361 CTCAGCTGCGCAACCTTGA 126379 |||||||| ||||||| Sbjct 18404 GCGAGCTGCGCGACCTTGA 18422 >seq3887 Length=15026 Score = 93.3 bits (102), Expect = 5e-14 Identities = 142/201 (71%), Gaps = 6/201 (3%) Strand=Plus/Minus Query 15398 ATATTTATGGGACCGACGTACTATCACCGACTCAAACACATGGTAAAGGACAAGATGCAC 15457 || || || || ||||||| ||| || || ||||| || ||||| | |||||||| ||| Sbjct 3046 ATCTTCATCGGCCCGACGTTCTACCAGCGTCTCAAGCATATGGTCGACGACAAGATCCAC 2987 Query 15458 GCGCGATCGCACGGACAGGTGACGACGCTCCATCGCCAGCCCAACTGCGGTCGATCGCAA 15517 |||| |||| ||| | ||||||| ||| |||||||||| ||||| ||| | Sbjct 2986 TCGCGCTCGCGCGGCCCCGTGACGATGCTGACGCGCCAGCCCATGGAGGGTCGTGCGCGA 2927 Query 15518 GGCGGTGGCCTCCGCTTTGGAGAGATGGAAAAGGACTGCATTCTGGT---GCACGGCGCC 15574 | ||||| || || | ||||||||||| ||||| |||| | ||||||| | Sbjct 2926 GAAGGTGGTCTGCGTATGGGAGAGATGGAGCGTGACTG---TCTGATCTCGCACGGCTCG 2870 Query 15575 ACCCAATTCCTCAACGAGCGC 15595 || | ||||||| || ||| Sbjct 2869 GCCAACTTCCTCATGGACCGC 2849 >seq6130 Length=72722 Score = 91.5 bits (100), Expect = 2e-13 Identities = 197/289 (68%), Gaps = 8/289 (3%) Strand=Plus/Minus Query 15365 TCGGGCTTTACCGGCGAAAGGATCCAAAGCACCATATTTATGGGACCGACGTACTATCAC 15424 |||||| | || |||||| ||||| || ||| |||||||| |||| ||||| || Sbjct 38352 TCGGGCATCACGGGCGAACCGATCCTGTGCTACATCTTTATGGGCCCGATCTACTACCAG 38293 Query 15425 CGACTCAAACACATGGTAAAGGACAAGATGCACGCGCGATCGCACGGACAG-GTGACGAC 15483 ||||| |||||||| | ||||||||||||||||||| || || | | | | || Sbjct 38292 AAGCTCAAGCACATGGTCATGGACAAGATGCACGCGCGAGCGAGAGGCCCGCGCGCCG-T 38234 Query 15484 GCTCCATCGCCAGCCCAACTGCGGTCGATCGCAAGGCGGTGGCCTCCGCTTTGGAGAGAT 15543 |||| || ||||| | | || || |||| | ||| ||||| || | || ||||| Sbjct 38233 GCTCACGCGGCAGCCGACCGAGGGCCGCTCGCGCGACGGCGGCCTGCGTCTCGGCGAGAT 38174 Query 15544 GGAAAAGGACTGCATTCTGGT--GC-ACGGCGCCACCCAATTCCTCAACGAGCGCATGTT 15600 ||| ||||| |||| | || ||||||| | | | |||| |||||| | | Sbjct 38173 GGAGCGCGACTG---TCTGATCGGCTACGGCGCGAGCATGCTGCTCATGGAGCGCCTCAT 38117 Query 15601 TCTCAACAGTGACCCGTTCCAGATTGACGTGTGCAAAGACTGCGGCATG 15649 || || ||| ||||| | ||||||||| | | |||| ||||| Sbjct 38116 GATCTCGAGCGACGCGTTCACGGCGGACGTGTGCCAGGGCTGCCGCATG 38068 Score = 86.0 bits (94), Expect = 8e-12 Identities = 129/178 (72%), Gaps = 4/178 (2%) Strand=Plus/Minus Query 15020 GTAAAGGTTGTCATTGGCCAGATGCGCACGCCCGAGATTGGCGACAAGTTTTGCTCT-GG 15078 || ||||| |||| |||||| ||| ||||||||| ||||||||||| || | | Sbjct 38697 GTCAAGGTGCTCATCCGCCAGACGCGTCGGCCCGAGATCGGCGACAAGTTCAGCAGTCGC 38638 Query 15079 TATGGCGCAAAAGGGCACGTGCGGCATGATTTTCCCCCAGGAAGACATGCCCTTTACCG- 15137 | ||| || |||||| |||||||| ||| | |||||| |||||||| || | || Sbjct 38637 CACGGC-CAGAAGGGCGTGTGCGGCACGATCCGCAACCAGGAGGACATGCCGTTCAACGA 38579 Query 15138 CGTCAGGCATGACGCCCGACATTATCATCAACCCCAACTGCATCCCGTCCCGCATGAC 15195 || | ||| | |||||| | ||||| ||||| || || ||||| ||||||||| Sbjct 38578 CGAC-GGCGTCTGCCCCGACCTCATCATGAACCCGCACGGCTTCCCGAGCCGCATGAC 38522 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 611323279539200