Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pythium_20insidiosum_20[genbank_20GCA_5F000764265.1_202014-10-06] 8,992 sequences; 45,609,708 total letters Query= NC_008603.1 Length=321240 Score E Sequences producing significant alignments: (Bits) Value seq7209 170 4e-37 seq4347 150 4e-31 seq1165 86.0 1e-11 >seq7209 Length=39369 Score = 170 bits (188), Expect = 4e-37 Identities = 447/673 (66%), Gaps = 18/673 (3%) Strand=Plus/Minus Query 279691 TGCCAGTAGGTTCTCTGTCGGGTGGTTGGAAGATGAAGCTGGCCCTCACTCGCGCCATTC 279750 |||| || ||| | || ||||||||||||||||||||||| | | | || ||||| | Sbjct 15977 TGCCTGTCGGTGCCCTCTCGGGTGGTTGGAAGATGAAGCTTGAGTTGGCCCGTGCCATGC 15918 Query 279751 TACTGCGTGCCGATGTCCTACTGCTTGATGAGCCAACCAACCACATGGACACCACCAACG 279810 | || || ||| |||| || || |||||||| || |||||| |||| ||||| Sbjct 15917 TCATGAAGGCTGATATCCTCCTTCTCGATGAGCCGACGAACCACTTGGATGTGCACAACG 15858 Query 279811 TAGCCTGGCTAGTGTCCTACCTAACCAGTCTGAAGAATGTTTCTTCCCTCATTGTCTCTC 279870 | ||||| | | |||||| || || || | ||| || | || |||||||| || | Sbjct 15857 TCAAGTGGCTCGAGGACTACCTCACGAGCCTCACGAACGTGACGTCGCTCATTGTGTCGC 15798 Query 279871 ACGACTCTGGCTTCCTAGATGCCGTGTGCTCTGCCATCATTCACTATGAGCAAAATCTGA 279930 |||||||||| ||||| || | || ||| | |||||| ||||| ||| || | | Sbjct 15797 ACGACTCTGGTTTCCTCGACACGGTCTGCACGAACATCATCCACTACGAG---AACCGCA 15741 Query 279931 AGCTCTCCAAGCACATCGGCAACCTGTCTGCTTTCGTGGCAA--AGCGCCCTGAGGCGGC 279988 |||| | | ||| || ||||| |||| ||||| ||| || || ||||| Sbjct 15740 AGCTGAAGACGTACAAGGGTAACCTCTCTGAGTTCGT--CAAGCAGAAGCCGGAGGCCAA 15683 Query 279989 CGCCTACTATGACCTGAAGGACGCCACCGCCAAGTGGGAATTCCCTGAGCCAGGGTTTCT 280048 | ||||| || || ||| || || ||||| ||||||||||| || || || Sbjct 15682 GACGTACTACGAGCTTGAGGCTGCTGCCTTCAAGTTCACGTTCCCTGAGCCTGGTTTCCT 15623 Query 280049 GGAGGGCATC-ACATCAAAGGATCGCGCAATCATGAAGCTCCGTGGCGTCTCCTTTGCTT 280107 | | ||| | | ||| || || | ||||| || | ||| | | Sbjct 15622 TGCTGATATCAAGAACAAGGGTAAGC-CGATCATTCGTCTGACGAACTGCTCGTACCAGT 15564 Query 280108 ATCCCAATGGCCCCAACA--TCTTC-AGCAGTG---TCAACTCGCAGGTTTCTATGAACT 280161 | || ||||| | ||| | || | | ||| ||||| | | || | || Sbjct 15563 ACCC---TGGCCGCGACAAGCCGTCGATCCGTGACATCAACGTGACGTGCTCGCTCGCCT 15507 Query 280162 CACGGATTGGTGTCATTGGACCCAATGGTGCGGGTAAGTCTACCCTAATCAAAGTCCTGA 280221 | || || | |||||| || ||||| ||||| |||||||| || || ||||| | || | Sbjct 15506 CGCGTATCGCTGTCATCGGCCCCAACGGTGCCGGTAAGTCGACGCTCATCAAGATGCTTA 15447 Query 280222 CTGGCGAGACCCAGGCCACTGAGGGGTCCGTTTGGAAGCATCCCAACATGCGGATGGCTT 280281 | || ||| || | || | || | || |||||||| || |||||| | || | Sbjct 15446 CGGGTGAGGTTGAGCCTACGGTCGGTACGGTGTGGAAGCACCCGGCCATGCGTTTCGCCT 15387 Query 280282 ACGTCGCTCAGCACGCTTTCCACCACATCGAGAACCACCTGGACATGACTCCTAACCAAT 280341 |||| || |||||||| ||||||||||| ||| | ||||| ||||| || | ||||| | Sbjct 15386 ACGTTGCCCAGCACGCGTTCCACCACATTGAGGAGCACCTCGACATCACGGCCAACCAGT 15327 Query 280342 ACATTCAGTGGCG 280354 |||| |||||||| Sbjct 15326 ACATCCAGTGGCG 15314 Score = 114 bits (126), Expect = 3e-20 Identities = 154/212 (73%), Gaps = 2/212 (1%) Strand=Plus/Minus Query 279350 GGATCTGTGTGACTGTGATTTCTCGCTCGCATATGGTGGGAAGATTCTGCTAAACTCTAC 279409 |||||| || |||| || ||||||||||| || ||||| | ||||||||| ||| | Sbjct 16315 GGATCTCTGCAACTGCGAGTTCTCGCTCGCCTACGGTGGTATGATTCTGCTGAACAACGC 16256 Query 279410 CCGCCTCAACATCAAGCGTGGCAACCGGTATGGTCTCATCGGTCCCAATGGAGCGGGTAA 279469 |||||| | ||||||||||| |||| || ||||| ||| || || || ||||| Sbjct 16255 CCGCCTTCGCCTCAAGCGTGGCCACCGCTACGGTCTGTGCGGCCCGAACGGTTGCGGTAA 16196 Query 279470 GAGCACTCTAATGCGCGCCATTGCAAACGGTCAGCTGGAAGGATTTCCTAACGCA-TCTG 279528 | || || ||||||||||| | ||||| ||||| || || || ||| ||||| || Sbjct 16195 GTCGACGCTTATGCGCGCCATCTCGAACGGCCAGCTCGAGGGCTTCCCT-ACGCAGGATG 16137 Query 279529 AGGTAAGGACAGTGTATGTAGAGCACGACATC 279560 || | | ||| || | || |||||| || || Sbjct 16136 AGCTCAAGACGGTCTTCGTCGAGCACAACCTC 16105 >seq4347 Length=93765 Score = 150 bits (166), Expect = 4e-31 Identities = 558/858 (65%), Gaps = 30/858 (3%) Strand=Plus/Plus Query 251563 TCGAAGAAATTAGACTTGCCCTCCAGAGAGATTAGCTCCATGAAGTCGAAGGGGTTTGTG 251622 |||||||| || | |||||||| || ||||| | ||||| |||| || ||||| | Sbjct 72454 TCGAAGAAGTTGGTCTTGCCCTGGAGCGAGATCATGTCCATCCAGTCAAACGGGTTCGAC 72513 Query 251623 GCATTGTACTGCTTGGGATGGCCAAGTGCTACGAAGATGCGGTCTGCCACAAACTCCAGA 251682 | ||||| ||||| ||||| || || || ||| || || ||||| | Sbjct 72514 ACCTTGTAAATCTTGGCGACACCAAGCGCGTGGAGGAGGCGATCGGCGCAGAACTCGATG 72573 Query 251683 TACTGTCCCATCAGTTCAGAGTTCATGCCAATCATA-CGACAAGGAATTGCCTCACAGAT 251741 ||||| | ||| || ||||||||||| |||| |||| |||| | || || Sbjct 72574 TACTGGCACATGAGCGACGAGTTCATGCCGATCAGCTCGACC-GGAAGCGAGTCCTGGAC 72632 Query 251742 GAATTCCTTTTCGTTGGCAACTGCCTCCTCCACAATTGCCTTCACCTGTGCCAGAGAC-- 251799 ||| ||||| || | || || || || | | || ||| ||| || | Sbjct 72633 GAACTCCTTCTCAATCGCGACGGCATCG----CGAATGATCTCATGGATGCGCGACTCCG 72688 Query 251800 --AGCTTGTTCTCCAGCTTTGAGTACAGGAG-CTCGCCAAACTGTTG--GTGCAGACCCT 251854 |||||||| | ||||| |||||||| || | || || || | ||| || |||| Sbjct 72689 GGAGCTTGTTGACAAGCTTGGAGTACAGCAGGCAAGCGAA---GTCGCAGTGGAGGCCCT 72745 Query 251855 CGTCGCGACTGATGAACTCGTTGGACAGACCCAGGCCAGGCATCACCCCACGGTTCCTGA 251914 | ||||| ||||| |||||| || | | ||||||||||| | ||||| ||| ||| Sbjct 72746 CATCGCGCGAGATGAGCTCGTTCGAGAAGCTGAGGCCAGGCATGAGACCACGCTTCTTGA 72805 Query 251915 GCCAGAAGATTGCGCAAAAGGATCCAGAGAACAGCAGACCCTCGACACACACCCATGCAA 251974 |||||||||| | ||| || || || ||||| | | ||||| || | | || | Sbjct 72806 GCCAGAAGATGGAGCAGAACGAGCCCGAGAAGAAAATGCCCTCAACGGCAGCGAACGCGA 72865 Query 251975 CAAGGCGCTCAGCAAACGACTTGTCCTGCGA---CAAGAACTTCTGTGCCCA-TGCTGCC 252030 ||| |||||||||||| | | | |||| | |||| | ||||| ||| ||| Sbjct 72866 CAATGCGCTCAGCAAAAGCCGCGCGGCGCGAGTCGCACCACTTGAGCGCCCAGTGC-GCC 72924 Query 252031 TTCTT-TCCAACCGC-GGGGATTGTTTCGATTGCATCAAAGAGAGAGTTCCGCTCGGCAT 252088 ||||| | || ||| || || || ||||| || | ||| |||| ||| | | Sbjct 72925 TTCTTCTGCA--CGCATGGAATGGTCTCGATGGCGCGGAGGAGGTGGTTCTTCTCCGTCT 72982 Query 252089 CGTCCTCGATGAGCGCATCAAGCAGGAGAGAGTACATCTCCGAATGGATGGATTCGTTGA 252148 ||||| |||| || |||| || || ||||||| |||||| |||||| || || Sbjct 72983 GGTCCTTGATGTACGTGTCAATGAGCAGCGAGTACACCTCCGAGTGGATGTTCTCAATGG 73042 Query 252149 ACATCTGGTAAGCATAGAATAGACGCGCGGAAGGGTCGGTGACTTCCGTGGAAAAGTTGT 252208 |||||| | ||||||| |||||| ||| | || || || ||||| Sbjct 73043 CGATCTGGAAGCCATAGAAGCAACGCGCCTCAGGAACCTGCACCTCGCTGCTGAAGTTCA 73102 Query 252209 TTGCAATGTTCTCCATCACCATGCCATCGCTGCCTGCAAAGAAGCCAAGAATGGTCTTGA 252268 | || | |||||| | || || || ||||| | || ||||| | || | | ||||| Sbjct 73103 TCGCGAGGTTCTCGTTGACGATACCGTCGCTCGCCGCGAAGAACGCGAGGACGTGCTTGA 73162 Query 252269 TGAAGTGACGCTCATCGTCGTTGAGCTTGTCACGCCAGTCGGCAATGTCCTGATTCAGAG 252328 | ||||| ||||| | ||| |||| ||| | |||||| | ||| || ||| Sbjct 73163 TAAAGTGGCGCTCGTTGTCCGTGAGGTTG---CCCCAGTCCTTGAGGTCGTGCACGAGAT 73219 Query 252329 GAACTTCTTCCACCGTCCAGAATGTGGACACCGCCTTCTTGTACAT-TGCGAACACATCA 252387 | || || | |||||||| | | | | |||||||||||||| ||| |||| || Sbjct 73220 CGATCTCCTCGGCGGTCCAGAAGCTCGCCTCGGCCTTCTTGTACATCTGC-CACACCTCG 73278 Query 252388 GGGTACTTGATTGGGAAA 252405 | || ||| |||||| Sbjct 73279 TTCTCCTGGATCGGGAAA 73296 >seq1165 Length=1402 Score = 86.0 bits (94), Expect = 1e-11 Identities = 58/65 (89%), Gaps = 0/65 (0%) Strand=Plus/Minus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 ||||| ||||||||||||||||||||| | || |||| | ||||||||||||||||||| Sbjct 77 GCCCGTCTAGCTCAGTCGGTAGAGCGCTGGCCTTTTAAGCCAGTGGTCGTGGGTTCGAGC 18 Query 142564 CCCAC 142568 ||||| Sbjct 17 CCCAC 13 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1027718382922272