Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pythium_20insidiosum_20[genbank_20GCA_5F000764265.1_202014-10-06] 8,992 sequences; 45,609,708 total letters Query= NC_009127.1 Length=295146 Score E Sequences producing significant alignments: (Bits) Value seq3132 571 1e-157 seq4347 347 2e-90 seq6188 104 4e-17 seq5763 102 2e-16 >seq3132 Length=41768 Score = 571 bits (632), Expect = 1e-157 Identities = 1168/1721 (68%), Gaps = 51/1721 (3%) Strand=Plus/Minus Query 243775 CAGGTAGTACATGCCGGTCTTGAGTCCACTGGACCAGGCGTGGAGGTGCATGGCCGTCAG 243834 ||||||||||||||| |||||||| || | ||| |||| || |||||||| |||||| Sbjct 33438 CAGGTAGTACATGCCCGTCTTGAGACCCTTCTTCCACGCGTAGAAGTGCATGGACGTCAG 33379 Query 243835 CTTCTTCATCTTGAGCTTTGGGTCGTCCTCGCACAGAAAGAGGTTGAGGGACTGGCTCTG 243894 ||| | ||| | ||| | | || |||| |||||| ||||||||||| Sbjct 33378 CTTGCTGATCGTCGGCTCCGCGATGT----GCAC--------GTTGAGCGACTGGCTCTG 33331 Query 243895 GTCGACGAAGGGCGCC-CGCTCTGCGGCCATGGTGATGAGGTCCTTCTGAGATATCTCAT 243953 | || | ||| |||| || || ||||||||| || | | ||||||| ||||| Sbjct 33330 GCAGATGTAGG-CGCCGCGGTCGGCGGCCATGTCGAGCACGGCCTTCTGCTTGATCTCCC 33272 Query 243954 ACGCCGTCTTGTAGATGGGCTTGAGGTGCTCGGGGAACCCTTCGATGTTCTGCACCGAGC 244013 || | |||||||| | ||| | | || |||| | | | |||||||||||||| Sbjct 33271 ACACGGTCTTGTACTTCTCCTTCACGGCGTCCGGGATCACGCGCACGTTCTGCACCGAGC 33212 Query 244014 CCTTGTGGACGATGAGCTGGGTGCGCATGTTATCGTTCCACAGGCCCAAGCGCTCCA--- 244070 | | || | || || |||| |||||| | |||| | ||| | |||| | Sbjct 33211 CGTGGTCGTGGAGGATCTGGTTGCGCACCTCGGGCGTCCAGATGCCGA---GCTCGATGA 33155 Query 244071 GCGCCTCGACCAGGTGCCTGTTCACCACCTGAAACTCTCCCGACAGCACGCGGCGCTGGT 244130 || ||| | |||| | ||||||| | | ||||| || | ||||||||||| | || Sbjct 33154 GCTCCTTCATGAGGTACTTGTTCACGATCGTGAACTCGCCAGCGAGCACGCGGCGGTTGT 33095 Query 244131 AGAGGTTGCTGCTGAGCGGCTCGATGCTCTCCGTGTTGCCCAGTATCTGCGCCGTGCTCG 244190 | | |||| | ||| ||||||||| ||| ||||||| || |||||||| || || Sbjct 33094 ACATGTTGGTCGTGAACGGCTCGATCGACTCGTTGTTGCCGAGGATCTGCGCGGTCGACG 33035 Query 244191 CAGTCGGCATGGGCGACACCAGCAGACTGTTCCTCACGCCGTGCCTCTGGATGCGGAGTC 244250 | |||||||| |||| | |||||| ||| | |||||||| | | || || Sbjct 33034 CCGTCGGCATCGGCGCGAGCAGCAGCGAGTTGCGCACGCCGTACTGCGCGACGCTCGCCT 32975 Query 244251 TGAGCTCGTTCCAGTCCCACATGCCCGAGAGGTCCTCGCGTTTGAGGCCCCACATGTCAA 244310 ||||| || ||||||||| | ||||| ||| || ||| |||||||||||| | Sbjct 32974 TGAGCGCGGCCCAGTCCCAGAGACCCGAC--GTCGGCG----TGACGCCCCACATGTCGA 32921 Query 244311 ACTGCAGCAGCCCCTTGCTGACGGGGCTGCCCTCGTAGGTCGGGTAGGGACCGTCGCGCT 244370 |||| | | |||||||| ||||| ||||||||| | ||| || |||| | Sbjct 32920 ACTGGAAGATGCCCTTGCTCACGGGCGAACCCTCGTAGCTGCCGTACGGGCCGTGCTCCC 32861 Query 244371 GGGCCAGCTTACAGCTCT-CGTCGAGGGCGGCGTAGTAGATGGTCTCGAAGATCATCTTG 244429 | || |||| || | | || | ||| | |||| | ||||||||||| ||||| Sbjct 32860 GTGCGAGCTC-CATCGAGGCCTCCATAGCGCCAAAGTACAGCGTCTCGAAGATGTTCTTG 32802 Query 244430 TTCATGTCGCGGGCCTTGCCGCAGGTGAAGGGGATGCCCATCATCATGAAGACGTCGGCC 244489 || | |||||||||| | ||| ||| | | |||||| | ||||| |||| || Sbjct 32801 TTGAGCTCGCGGGCCTCGTCGCTCTCGAACGCGTAGCCCATGAGGATGAACGCGTCCGCG 32742 Query 244490 AGTCCCTGCACGCCGATGCCGATGGGTCTGTGTCGCTTGTTGGAGCGCATGGCTTCGGGC 244549 || |||||||||||||||||||| || | ||| ||| |||| |||| ||| ||||| Sbjct 32741 AGACCCTGCACGCCGATGCCGATCGGGCGGTGGCGCAGGTTGCTGCGCTCGGCCTCGGGG 32682 Query 244550 ACGGGGTAAAAGTTGCCGTCGATCACCTTGTTGAGGTTGCGGGTGATCATGCGGACGACG 244609 | ||||| ||||| |||||| |||||||| |||||||| |||| | | || | Sbjct 32681 ATCGGGTAGTAGTTGATGTCGATGACCTTGTTCAGGTTGCGCGTGACGACCTTGGTGATG 32622 Query 244610 TCGGCCAGCAGCTGAAAGTCGTACTCGTAGGGATCCTCGGCGATGGTGATCCTCACAAAC 244669 ||| ||| || ||||| | | | || |||| |||||||| Sbjct 32621 TCGTAGAGCTTCTTGAAGTCAAAGGTCTTG---TCGTCGG------------TCACAAAC 32577 Query 244670 TCGTTGAGGGCGACGCTGGCCAGGTTGCAGACGGCCACCTCCTCCGAGTTGGTGTACTGG 244729 | | || |||| | || |||||||| || || ||||| || | ||||||| | Sbjct 32576 TTGGACAGCGCGATGGACGCGAGGTTGCACACCGCGACCTCATCGGGCGACGTGTACTCG 32517 Query 244730 ACAATCTCGGTGCAGAGGTTACTGCACTTGATGGTGCCCAGGTGCTGGTGATTGGACTTG 244789 | | |||| ||||||||| || | ||| ||||| |||| ||| || || |||||| Sbjct 32516 AGCACCTCGCAGCAGAGGTTGCTCGAGCGGATCGTGCCGAGGTTCTGCTGGTTCGACTTG 32457 Query 244790 GCGTTGCAGGCGTCCTTGTAGAGCATGAAGGGCCCCCCGGTCTCGAGCTGGGCGACGAGG 244849 |||||| | ||||||||| |||||| | ||| || ||||||| ||| | ||||| Sbjct 32456 CGGTTGCACGAGTCCTTGTACAGCATGTACGGCGTGCCCGTCTCGATCTGCGACTCGAGG 32397 Query 244850 A-CGCTGTTCCAGAGGTCCCTAGCCTTGACCGTCCTGCGAGCCTTGCCCTCTGCCTCGTA 244908 | ||| | |||||| | | || || |||| |||| || |||||| |||||| Sbjct 32396 ATCGC-GAACCAGAGCTGCTGCGCGCGGATCGTCTTGCGCGCGCGGCCCTCGCGCTCGTA 32338 Query 244909 GCGGGTGTACAGGGCCTCGAACTCGGGGCCCCAGACCTCGTCTAG-GCCGGGGCACGACG 244967 || |||||| |||||||||||| ||||| || |||| ||| ||| ||| | || Sbjct 32337 CTGGTGGTACAGCGCCTCGAACTCGTCGCCCC--ACGTCGTGTAGAGCCCCGGCGCCTCG 32280 Query 244968 -CCGGGCACATGAGACTCCACTCGCCGCCGTCCTTGACCCTCTGCATGAAGAGGTCGGGG 245026 |||||| | || |||||||||||| | ||| ||| | || ||||||||| |||||| Sbjct 32279 TTCGGGCAGAACAGGCTCCACTCGCCGTTGGCCTCGACGCGCTTCATGAAGAGATCGGGG 32220 Query 245027 ATCCAGAGGGCCTGGAAGAGGTCCCTGGTCCTCTGCTCGTCCGAGCCAGTGTTCTTCCTC 245086 ||||| | || | |||||| || | | | ||| || ||| ||||||| | Sbjct 32219 ATCCACATCGCGTAGAAGAGATCACGCGCGCGGTGCAGCTCGTTGCCGTGGTTCTTCTTG 32160 Query 245087 AGCTCCAAAAAGTCAAAGACGTCGACGTGCCAGGGCTCCATGTAGACAGCGAGGGCGCCG 245146 || |||| || || |||| |||| ||||||| ||||||| ||| | |||| | ||| Sbjct 32159 AGGTCCAGGAACTCGAAGATGTCGGCGTGCCACGGCTCCAGGTACATCGCGAACGAGCCC 32100 Query 245147 GGCCGCTTGTTGCCTCCCTGGTCCACCATCCTCTCGAGCGCGTTGAAGATGCGCAGGGTA 245206 |||||| ||| |||||||| || | | | ||||||||| |||||| | Sbjct 32099 TTGCGCTTGCCGCCGCCCTGGTCGACGTAGCGCGCCGTGTCGTTGAAGACGCGCAGCATG 32040 Query 245207 GGCACTATGCCGTTAGAGTGGCCGTTGGTGCCCTTGATGTAGGCGCCCTTGCCCCTGAGG 245266 ||||| | |||||| || |||||| ||||| |||||| | | | | | | || | Sbjct 32039 GGCACGAGGCCGTTCGACGAGCCGTTCGTGCCGCGGATGTACGAGTTCGTCGCGCGGATG 31980 Query 245267 TTGCTGATGGACATGCCTAGTCCGCCGGCGTGCTTGGAGATGAGGGCGCAGCTCTTGATG 245326 ||| | | | ||| | ||||| || |||||||||| ||||| ||||| Sbjct 31979 TTGTGCACGCTGACGCCGATGCCGCCAGCCCACTTGGAGATGCACGCGCACTGCTTGAGC 31920 Query 245327 GTGTCTGCTATGCCCTCCATGCTGTCCGACTTCATGTTGAGCAGAAAGCAGGAGGACAGC 245386 ||||| |||||||| || ||| ||||||| |||||| ||||| || |||||| Sbjct 31919 GTGTCGTAGATGCCCTCGATCGAGTCGTCCTTCATGGCGAGCAGGAAGCACGACGACAGC 31860 Query 245387 TG-GGGCTTGGGGCTGCACGAGTTGAACAGAGTGGGGCTGGCGTGGGTAAAGTAGCGGCT 245445 || |||| || | ||| || ||||||||| || || | ||||| || ||| ||| Sbjct 31859 TGCGGGCGCGGCG-TGCCCGCGTTGAACAGCGTCGGCGTCGCGTGCGTGAAGAAGCTTTG 31801 Query 245446 CGAGAGGAACCCGTACGTCTGGAGCAGAGCGTCGATGTTGT 245486 ||| | | || ||||||||| |||| |||||| |||| || Sbjct 31800 CGACATGTACTCGTACGTCTCGAGCGCAGCGTCAATGTCGT 31760 >seq4347 Length=93765 Score = 347 bits (384), Expect = 2e-90 Identities = 587/840 (70%), Gaps = 15/840 (2%) Strand=Plus/Minus Query 42309 ATGTACAAGAAGGCGCAGTTCTCCAACTGGACCGCCGAGGAGATTGACCTGGCCAAGGAC 42368 |||||||||||||| || | |||||||||||||||||| || || | | ||| Sbjct 73265 ATGTACAAGAAGGCCGAGGCGAGCTTCTGGACCGCCGAGGAGATCGATCTCGTGCACGAC 73206 Query 42369 ACGGCCGGCTGGGAGTCACTGTCTGAGAACGAAAAGTTTTTCCTCAAAAACATACTGGCC 42428 | ||||| || | || ||||| || |||| || | || || Sbjct 73205 CTCAAGGACTGGGGCAACCTCACGGACAACGAGCGCCACTTTATCAAGCACGTCCTCGCG 73146 Query 42429 TTCTTCGCCGCCTCTGACGGCATAGTCAATGAGAACCTGGCCACCAGGTTCATGAAAGAG 42488 |||||||| || ||||| || ||||| |||||||| || | | |||| | ||| Sbjct 73145 TTCTTCGCGGCGAGCGACGGTATCGTCAACGAGAACCTCGCGATGAACTTCAGCAGCGAG 73086 Query 42489 GTGCAGTACTTTGAGGCGCGCTGCTTCTACGGCTTCCAGATAGCCATAGAGAACGTGCAC 42548 |||||| ||||||||| |||||||| ||||||||||| ||||| |||||| | ||| Sbjct 73085 GTGCAGGTTCCTGAGGCGCGTTGCTTCTATGGCTTCCAGATCGCCATTGAGAACATCCAC 73026 Query 42549 TCTGAGGTGTACGCCAAACTGCTCA---ACACGTACATCCTGGATCCCGTCG-AGCGTAA 42604 || ||||||||| | ||||||| ||||||||||| ||| || | || || || Sbjct 73025 TCGGAGGTGTACTCG---CTGCTCATTGACACGTACATCAAGGA-CCAGACGGAGAAGAA 72970 Query 42605 CGGGCTGTTCAAGGCCATGGAGACGATGCCCTGCATCAAGAAGAAGGCGGACTGGGCGCT 42664 | || || ||||| ||||| || || ||| | ||||||||||| |||||||||| Sbjct 72969 CCACCTCCTCCGCGCCATCGAGACCATTCCATGCGTGCAGAAGAAGGCGCACTGGGCGCT 72910 Query 42665 CAACTGGATCGAGAGTCCCGACGCAACGTTCGGCGAGAGGCTGGTAGCCTTTACCGCCGT 42724 ||| ||| ||| | | ||| | || | ||| | | || || || | ||||| Sbjct 72909 CAAGTGGTGCGACTCGCGCCGCGCGGCTTTTGCTGAGCGCATTGTCGCGTTCGCTGCCGT 72850 Query 42725 CGAGGGCATCTTCTTCTCGGGCGCCTTCGCCTCCATCTTCTGGCTCAAGCAGAA-GGTGT 42783 |||||||| |||||||||||| | ||| ||||||||||||||||||| || ||| | Sbjct 72849 TGAGGGCATTTTCTTCTCGGGCTCGTTCTGCTCCATCTTCTGGCTCAAGAAGCGTGGTCT 72790 Query 42784 CGATGCCCGGACTCACCTTCTCGAACGAACTCATCAGCAGGGACGAGGGGCTGCATAGGG 42843 | ||||| || |||| |||||||||||| |||||| | || ||||| || || | | Sbjct 72789 C-ATGCCTGGCCTCAGCTTCTCGAACGAGCTCATCTCGCGCGATGAGGGCCTCCACTGCG 72731 Query 42844 ACTTTGCCTGCCTCCTGTTCTCGAGCCACCTCAGGCACAAGCCCTCGAAGGAGCGGGTCC 42903 |||| || ||||| |||| ||| | | ||| |||||| | || || ||| ||| Sbjct 72730 ACTTCGCTTGCCTGCTGTACTCCAAGCTTGTCA---ACAAGCTCCCGGAGTCGCGCATCC 72674 Query 42904 GGGCCATCATCACGGAGGCCGTGGAGATCGAGAAGGAGTTCCTCACGCAGTCGCTGCCCG 42963 | ||||| || ||||| | ||| |||||||||||| || | | ||||| || | Sbjct 72673 ATGAGATCATTCGCGATGCCGTCGCGATTGAGAAGGAGTTCGTCCAGGACTCGCTTCCGG 72614 Query 42964 TGTCCCTGGTCGGCATGAACCACGAC-CTCATGTGCAAGTACATCCAGTACGTCGCCGAC 43022 | ||| |||||||||| | || | ||||||||| |||||||| ||| | |||||| Sbjct 72613 TCGAGCTGATCGGCATGAA-CTCGTCGCTCATGTGCCAGTACATCGAGTTCTGCGCCGAT 72555 Query 43023 CATCTCCTGTGCCAGATGGGTCTCAGCCGCCTCTACAACACGCCGTGCCCCTTCGACTTT 43082 | ||||| | | | ||| || | | ||||| | || ||| || |||| Sbjct 72554 CGCCTCCTCCACGCGCTTGGTGTCGCCAAGATTTACAAGGTGTCGAACCCGTTTGACTGG 72495 Query 43083 ATGGAGAACATCTCGTTGGAGGGCAAGACCAACTTTTTCGAGAAGCGCGTCGCCGACTAC 43142 ||||| | |||||| | |||||||||||||||| |||||||||||||| | ||| ||| Sbjct 72494 ATGGACATGATCTCGCTCCAGGGCAAGACCAACTTCTTCGAGAAGCGCGTTGGCGAGTAC 72435 >seq6188 Length=1366 Score = 104 bits (114), Expect = 4e-17 Identities = 153/214 (71%), Gaps = 2/214 (1%) Strand=Plus/Plus Query 42930 ATCGAGAAGGAGTTCCTCACGCAGTCGCTGCCCGTGTCCCTGGTCGGCATGAACCACGAC 42989 || |||||||||||| || | | ||||| || || ||| ||||||||||| || | Sbjct 1 ATTGAGAAGGAGTTCGTCCAGGACTCGCTTCCGGTCGAGCTGATCGGCATGAACT-CGTC 59 Query 42990 -CTCATGTGCAAGTACATCCAGTACGTCGCCGACCATCTCCTGTGCCAGATGGGTCTCAG 43048 ||||||||| ||||||| ||| | ||||| | ||||| | | ||| || Sbjct 60 GCTCATGTGCCAGTACATTGAGTTCTGTGCCGATCGCCTCCTCCACGCACTTGGTGTCGC 119 Query 43049 CCGCCTCTACAACACGCCGTGCCCCTTCGACTTTATGGAGAACATCTCGTTGGAGGGCAA 43108 | ||||||| | || ||| ||||||| ||||| | |||||| | ||||||| Sbjct 120 CAAGATCTACAAGGTGTCGAACCCGTTCGACTGGATGGACATGATCTCGCTCCAGGGCAA 179 Query 43109 GACCAACTTTTTCGAGAAGCGCGTCGCCGACTAC 43142 ||||||||| |||||||||||||| | ||| ||| Sbjct 180 GACCAACTTCTTCGAGAAGCGCGTGGGCGAGTAC 213 >seq5763 Length=44879 Score = 102 bits (112), Expect = 2e-16 Identities = 217/319 (68%), Gaps = 4/319 (1%) Strand=Plus/Minus Query 242859 GAAGGCGTCGATCGTTCGGGTAAGTCGACGCAGTGTCGCATGCTGGTCAAGGCCCTGCTG 242918 || ||||||||||| | || ||| |||||||| || | ||| | || |||| | Sbjct 13427 GAGGGCGTCGATCGCTGTGGCAAGACGACGCAGACACGTCTACTGCACGAGAAGCTGCAG 13368 Query 242919 GAGATGGGAGTCGAGGCCGAGCTGATGAGGTTCCCGGACAGGACCACTCCGATCGGACAG 242978 | | |||| | || | | |||| || ||||| ||| | | ||| | ||||| ||| Sbjct 13367 GCGCTGGGCCGCCAGTCGGCGCTGCTGCATTTCCCCGACCGCAGCACGGCCATCGGGCAG 13308 Query 242979 ATGATCAACTCGTACCTGCTCAAC-AAGAGCGATCTGGACGATCACGTCGTACACCTCCT 243037 |||||| ||||||| | | || || || ||||||| | || | || || || Sbjct 13307 TCCATCAACGCGTACCT-CACGACGGCGACCGCGATGGACGACCGCGCGATTCATCTGCT 13249 Query 243038 GTTCTCGGCCAACCGATGGGAAGCCGCCTCCGA-CCTGAAGCGCAAGCTGATGAAGGGTA 243096 |||| | || ||||| ||||| |||||| | | ||| | || ||| | || || Sbjct 13248 GTTCGCCGCGAACCGCTGGGAGGCCGCCAGCAAGATTGAGGAGC-TGCTCAAGAGCGGCG 13190 Query 243097 CCACCATCGTGCTCGACCGCTACGCGTTCTCCGGCGTAGCCTTCACGGCGGCGAAGCCCG 243156 || | |||| | ||||||||| ||||| |||||| || ||| | ||||| ||||| | Sbjct 13189 TCAACGTCGTCATGGACCGCTACTCGTTCAGCGGCGTGGCGTTCTCAGCGGCCAAGCCAG 13130 Query 243157 GGTTCGAGCTCGAGTGGTG 243175 || || |||||| ||||| Sbjct 13129 GGCTCTCGCTCGACTGGTG 13111 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 944233056273920