Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pythium_20insidiosum_20[genbank_20GCA_5F000764265.1_202014-10-06] 8,992 sequences; 45,609,708 total letters Query= NC_009503.1 Length=124121 Score E Sequences producing significant alignments: (Bits) Value seq1220 102 6e-17 seq2702 98.7 8e-16 seq7397 86.0 5e-12 >seq1220 Length=9499 Score = 102 bits (112), Expect = 6e-17 Identities = 112/149 (75%), Gaps = 0/149 (0%) Strand=Plus/Minus Query 33901 CCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCC 33960 || || | ||| ||||||||||| || ||||| ||||||||| |||||||| || | | Sbjct 260 CCACCACGCAGACGCAGCACCAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCCGAC 201 Query 33961 AATTGTCGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGGC 34020 | || |||| |||| |||||||| || || |||||||||||||| ||| ||| Sbjct 200 AGCGTGCGGCCGTCCTCCAGCTGCTTGCCAGCGAAGATCAGGCGCTGCTGGTCCGGCGGA 141 Query 34021 ACGCTCTCTTTGTCCATAATTTTTTGCTT 34049 | || ||| |||||| ||| || ||||| Sbjct 140 ATGCCCTCCTTGTCCTGAATCTTCTGCTT 112 >seq2702 Length=56295 Score = 98.7 bits (108), Expect = 8e-16 Identities = 164/236 (69%), Gaps = 6/236 (3%) Strand=Plus/Minus Query 33900 ACCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGC 33959 ||| || | ||| || |||||||| || ||||| ||||||||| |||||||| || | Sbjct 26992 ACCACCACGCAGGCGGAGCACCAGGTGGAGCGTCGACTCCTTCTGGATGTTGTAGTCCGA 26933 Query 33960 CAATTGTCGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGG 34019 | || |||| || | ||||||||||| || |||||||||||||||||| || Sbjct 26932 GAGCGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGATCCGGAGG 26873 Query 34020 CACGCTCTCTTTGTCCATAATTTTTTGCTT---AATGGAACTCACACTATCAGTAGATTC 34076 | | ||| |||||| || || ||||| | || | | || || | || || Sbjct 26872 GATTCCCTCCTTGTCCTGGATCTTCTGCTTGACATTGTCA---ATGCTGTCCGAAGGCTC 26816 Query 34077 GCATTCGACCGTTATTGTTTTTCCGGTTAGTGTTTTCACAAAGATTTGCATTTTTA 34132 | |||| ||| || || || ||||| || || || || ||||| ||||| |||| Sbjct 26815 GACGTCGAGCGTGATCGTCTTGCCGGTCAGAGTCTTGACGAAGATCTGCATCTTTA 26760 >seq7397 Length=9624 Score = 86.0 bits (94), Expect = 5e-12 Identities = 90/116 (78%), Gaps = 2/116 (2%) Strand=Plus/Plus Query 33900 ACCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGC 33959 ||| || | ||| || |||||||| || ||||| ||||||||| |||||||| || | Sbjct 4192 ACCACCACGCAGGCGGAGCACCAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCCGA 4251 Query 33960 CAATTGT-CGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCC 34014 || || || |||| || | ||||||||||| || |||||||||||||||||| Sbjct 4252 -AAGGGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGATCC 4306 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397018885931584