Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pythium_20insidiosum_20[genbank_20GCA_5F000764265.1_202014-10-06] 8,992 sequences; 45,609,708 total letters Query= NC_009899.1 Length=344691 Score E Sequences producing significant alignments: (Bits) Value seq7209 179 8e-40 seq4347 154 3e-32 >seq7209 Length=39369 Score = 179 bits (198), Expect = 8e-40 Identities = 686/1058 (65%), Gaps = 53/1058 (5%) Strand=Plus/Plus Query 333314 CTCTTTGTCTTCACCGGAGGCATAACGCCATTGGATATACTGGTTGGGTGTCATGTCAAG 333373 ||| ||||| ||||| || ||||||| ||||| |||||||||| || ||||| || Sbjct 15289 CTCCTTGTCCTCACCCGACTGGAAACGCCACTGGATGTACTGGTTGGCCGTGATGTCGAG 15348 Query 333374 ATGATCCTCGATGTGGTGGAAAGCATGCTGTGCCACGTAAGCAAGACGCATATTTGGATG 333433 || ||||| ||||||||||| || ||||| || ||||| || | |||||| || || Sbjct 15349 GTGCTCCTCAATGTGGTGGAACGCGTGCTGGGCAACGTAGGCGAAACGCATGGCCGGGTG 15408 Query 333434 CTTCCAAACACTTCCGTTGGTGGCTTCCATTTGCCCCGTGAGCACCTTAATGAGAGTGCT 333493 |||||| || | ||| || | || | | ||||| |||| ||| ||||| || Sbjct 15409 CTTCCACACCGTACCGACCGTAGGCTCAACCTCACCCGTAAGCATCTTGATGAGCGTCGA 15468 Query 333494 TTTTCCCGCACCATTTTCGCCTACCACACCAATCCTGGAGTTCAGCGATACCTGGGCA-T 333552 || || ||||| || ||| | ||| | || | ||| ||||| ||| Sbjct 15469 CTTACCGGCACCGTTGGGGCCGATGACAGCGATACGCGAGGCGAGCGA-------GCACG 15521 Query 333553 TCACGT---TGTCAAAGAT---TAGTTTTTCCGTACCCGGATACTTGAACCCCACACCGC 333606 |||||| ||||| ||| | || || || || |||| | | | || | Sbjct 15522 TCACGTTGATGTCACGGATCGACGGCTTGTCGCGGCCAGGGTACTGGTA-CGAGCAGTTC 15580 Query 333607 GT-AGCTTCATGAT-GGC--ACGGTCCTTCGAAGTGATACCCTCGAGGAACCCGGGCTCG 333662 || || ||||| ||| || |||| ||||| | | ||||| || ||||| Sbjct 15581 GTCAGACGAATGATCGGCTTAC---CCTTGTTCTTGATATCAGCAAGGAAACCAGGCTCA 15637 Query 333663 GGGAACTTCCACGTG--GTCTTC-GTCTCGGTAAGGGCGTAGTAACTCGCTGATTCGGGA 333719 |||||| | || || | | | | ||| ||| ||||||| || | || || Sbjct 15638 GGGAACGTGAACTTGAAGGCAGCAGCCTC---AAGCTCGTAGTACGTCTTGGCCTCCGGC 15694 Query 333720 CGCTTCTTCACGAACTCGGACAGATTTCCCTTGTACTTCTTCAGCTTTAGGTTAGGTTCG 333779 || ||| |||||||| || || || ||||||||| |||||||||| |||| ||| Sbjct 15695 TTCTGCTTGACGAACTCAGAGAGGTTACCCTTGTACGTCTTCAGCTTGCGGTT---CTCG 15751 Query 333780 TAATGGATAATAGAGGTGCAAACAGCGTCGAGGAACCCGGAGTCGTGTGACACAATCACG 333839 || ||||| || ||||| || | ||||||||| || |||||||| |||||||| | Sbjct 15752 TAGTGGATGATGTTCGTGCAGACCGTGTCGAGGAAACCAGAGTCGTGCGACACAATGAGC 15811 Query 333840 CACGAAACGTCCTTAAGGTTGATCAGGTATTCAATCAGCCACCTCACGTTAGACACAGAA 333899 ||| |||| | | ||| | | ||||| || |||||| | ||||| |||| Sbjct 15812 GACGTCACGTTCGTGAGGCTCGTGAGGTAGTCCTCGAGCCACTTGACGTTGTGCACATCC 15871 Query 333900 AGATGGTTGGTCGGCTCGTCAAGAAGTAGTAGCTTTGCGTTCAGGAGCATTGCACGTGCA 333959 | ||||| |||||||| || ||||| || | | || |||| |||||| ||||| || Sbjct 15872 AAGTGGTTCGTCGGCTCATCGAGAAGGAGGATATCAGCCTTCATGAGCATGGCACGGGCC 15931 Query 333960 AGAGCGAGTTTCATTTTCCACCCTCCTGAAAGAGTGTTAATTGGGGCAGATTGGCGCTCA 334019 | | || ||||| ||||| || || | |||| | |||| |||| || Sbjct 15932 AACTCAAGCTTCATCTTCCAACCACCCG--AGAGGGCACCGACAGGCA---TGGC-CTGC 15985 Query 334020 ATATC------AAAGCCAACCGATTCTAGAGTA-GTTAC-GATCTTTTCACGAGACCAAA 334071 || || ||||| || || ||| | || || || || ||||| | | | Sbjct 15986 ATCTCGGCCGTGAAGCCGAC--GCTCGTGAGCATGTCACGGACCTCCTCACGCGGC---A 16040 Query 334072 TGTTTTCCTTTACTTGTTCATCATTGGCAATGAAGTCAATGATAGCCATGTTAGAATCGG 334131 ||| ||| | || ||| | |||||||| |||| | | | || || Sbjct 16041 GGTT---CTTGAGGGCCTCGTCACAGAACATGAAGTCGATGACCGGAAGCTCAGCCTCCT 16097 Query 334132 ACCCGTCGAGATCGTGTTCCACGTAAGCAGTTTTCAAAACATCCGCAGAGGGGAACCCTT 334191 | | ||| | ||| || ||| | | || || | ||||| | ||||| || | Sbjct 16098 CAGCCTGGAGGTTGTGCTCGACGAAGACCGTCTTGAGCTCATCCTGCGTAGGGAAGCCCT 16157 Query 334192 CAAGCTGACCGTTCACAATAGCGCGCATCAGAGTTGATTTACCCGCCCCGTTTGGCCCAC 334251 | ||||| |||||| || |||||||| || || || ||||| ||||| || || | Sbjct 16158 CGAGCTGGCCGTTCGAGATGGCGCGCATAAGCGTCGACTTACCGCAACCGTTCGGGCCGC 16217 Query 334252 ACAGACCGTAGCGGTTTCCACGCTTCAGATTGAACCGCGTATTGTTCAGAAGAATTTTTC 334311 ||||||||||||||| |||||||| || | || | |||||||| ||||| | | Sbjct 16218 ACAGACCGTAGCGGTGGCCACGCTTGAGGCGAAGGCGGGCGTTGTTCAGCAGAATCATAC 16277 Query 334312 CACCATATGCCAGAGAAAATTCACAATCACACAGATCC 334349 |||| || || || || || || || | || |||||| Sbjct 16278 CACCGTAGGCGAGCGAGAACTCGCAGTTGCAGAGATCC 16315 >seq4347 Length=93765 Score = 154 bits (170), Expect = 3e-32 Identities = 563/868 (65%), Gaps = 34/868 (4%) Strand=Plus/Minus Query 242875 TTCCCCATCCAGTATCCGGATATGTGGGATATGTATAAGAAGGCAGTGGCAACCTTTTGG 242934 ||||| |||||| | || ||||| | ||||| |||||||| | ||| | ||| ||| Sbjct 73295 TTCCCGATCCAGGAGAACGAGGTGTGGCAGATGTACAAGAAGGCCGAGGCGAGCTTCTGG 73236 Query 242935 ACCACCGAGGAAGTTC---CTC-TGAACGCAGACGTCGTCGACTGGCGCGAGAAACTCAA 242990 ||| ||||||| | || ||| || ||| || || |||||| || || |||| Sbjct 73235 ACCGCCGAGGA-GATCGATCTCGTGCACG---ACCTCAAGGACTGGGGC---AACCTCAC 73183 Query 242991 TGACGACGAACGTCATTTCATCAAACACATTCTAGGTTTTTTCGCAGGCTCCGATGGTAT 243050 ||| |||| || || || ||||| ||| | || | || ||||| | ||| ||||| Sbjct 73182 GGACAACGAGCGCCACTTTATCAAGCACGTCCTCGCGTTCTTCGCGGCGAGCGACGGTAT 73123 Query 243051 TGTGATGGAAAATCTGCAGACCAACTTTAGTGTGGAAGTAACGGTTCCAGAGGCACGGCA 243110 || | || || || || ||||| || || || |||||| ||||| || Sbjct 73122 CGTCAACGAGAACCTCGCGATGAACTTCAGCAGCGAGGTGCAGGTTCCTGAGGCGCGTTG 73063 Query 243111 ATTTTATGCTTACCAAA----CATTCAACGAATCTATCCATTCTGAACAATATGCTCTTC 243166 || |||| | ||| | |||| | ||| ||||| || || || | || | Sbjct 73062 CTTCTATGGCTTCCAGATCGCCATTGA--GAAC--ATCCACTCGGAGGTGTACTCGCTGC 73007 Query 243167 TTATCGACGCGCTTATTTCAGATGAACAA---GAGCGAAACGAGCTTTTCGACGCCATCG 243223 | || ||| || || ||| | || || ||| ||| | || || |||||||| Sbjct 73006 TCATTGACACG--TACATCA-AGGACCAGACGGAGAAGAACCACCTCCTCCGCGCCATCG 72950 Query 243224 AAAACATTCCGGCGGTTCATAACAAGGCAAAATGGGCTCAGAAGTGGCTAGAACC---CG 243280 | | |||||| || || || ||||| | ||||| | |||||| || | | Sbjct 72949 AGACCATTCCATGCGTGCAGAAGAAGGCGCACTGGGCGCTCAAGTGGTGCGACTCGCGCC 72890 Query 243281 GTAAATCATTTGCTGAGCGTCTCGTCGCCTGGGTGTGCGTTGAAGGTATTCTGTTTTCCG 243340 | | ||||||||||| | ||||| | | |||||| || ||| | || || | Sbjct 72889 GCGCGGCTTTTGCTGAGCGCATTGTCGCGTTCGCTGCCGTTGAGGGCATTTTCTTCTCGG 72830 Query 243341 GGAGTTTCTGCGCCATCTTTTGGCTGCGGAACAAAGGTGTGATGCCTGGCCTCGGTCTGT 243400 | |||||| ||||||| ||||| ||| ||| | |||||||||||| | | | Sbjct 72829 GCTCGTTCTGCTCCATCTTCTGGCTCAAGAAGCGTGGTCTCATGCCTGGCCTCAGCTTCT 72770 Query 243401 CTAACGAGTTCATCAGTCGCGACGAGGGCCTTCACCAACAGTTCGGTGAGCTTATGTATT 243460 | |||||| ||||| ||||| |||||||| ||| | |||| | || |||| | Sbjct 72769 CGAACGAGCTCATCTCGCGCGATGAGGGCCTCCACTGCGACTTCGCTTGCCTGCTGTACT 72710 Query 243461 CAAAGCTCCAGAACAAGCTACC--ATTCGAAACGG-TCAAACAAATCATCACAGAAGCAG 243517 | ||||| |||||||| || | ||| || || | | ||||| || || | Sbjct 72709 CCAAGCTTGTCAACAAGCTCCCGGAGTCG---CGCATCCATGAGATCATTCGCGATGCCG 72653 Query 243518 TTGAAAACGAAAAGGAATTCATTTGCGACGCTATTCCATGCCGGCTTATTGGCATGAACT 243577 | | | || ||||| ||| | ||| | |||| | ||| || |||||||||| Sbjct 72652 TCGCGATTGAGAAGGAGTTCGTCCAGGACTCGCTTCCGGTCGAGCTGATCGGCATGAACT 72593 Query 243578 CTGAACTCATGGGACAGTACATCGAATTCGTAGCCGACCGCATTTTCATCGCGCTTGGTT 243637 | |||||| | ||||||||||| ||| ||||| ||| | || |||||||||| Sbjct 72592 CGTCGCTCATGTGCCAGTACATCGAGTTCTGCGCCGATCGCCTCCTCCACGCGCTTGGTG 72533 Query 243638 ATGAGAAAGTGTACAACTCCAAGAACCCCTTTGCCTTTATGGAGCTCATTTCGCTTCAAG 243697 | || | ||||| |||||| |||| || ||||| | || ||||| || | Sbjct 72532 TCGCCAAGATTTACAAGGTGTCGAACCCGTTTGACTGGATGGACATGATCTCGCTCCAGG 72473 Query 243698 GGAAAACTAACTTCTTCGAAAAGCGTGT 243725 | || || ||||||||||| ||||| || Sbjct 72472 GCAAGACCAACTTCTTCGAGAAGCGCGT 72445 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1102752937195200