Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pythium_20insidiosum_20[genbank_20GCA_5F000764265.1_202014-10-06] 8,992 sequences; 45,609,708 total letters Query= NC_011345.1 Length=155122 Score E Sequences producing significant alignments: (Bits) Value seq3132 331 9e-86 seq6188 109 5e-19 seq2702 102 8e-17 seq1220 93.3 4e-14 >seq3132 Length=41768 Score = 331 bits (366), Expect = 9e-86 Identities = 1153/1763 (65%), Gaps = 51/1763 (3%) Strand=Plus/Minus Query 152721 GTGCGCAAATAATACATGCCCGTTTTGAGGCCGCAGCGCCACGAGTAATTGTGAATCGAA 152780 ||||||| || ||||||||||| ||||| || ||||| ||| ||| || || Sbjct 33443 GTGCGCAGGTAGTACATGCCCGTCTTGAGACCCTTCTTCCACGCGTAGAAGTGCATGGAC 33384 Query 152781 GTCATCACAGCGTACGTCGGTTGCGCCACGAACAGATTAAACGATTGGCTCTGATCTATG 152840 |||| | | |||||| | ||| | | || || | ||| |||||||| ||| Sbjct 33383 GTCAGCTTGCTGATCGTCGGCTCCGCGATGTGCACGTTGAGCGACTGGCTCTGGCAGATG 33324 Query 152841 AAAGCGTTACGGTCGGCCGCCATCTCAATCATG-CGTTTTGCCTTCATCTCCCAGGCGGT 152899 | ||| |||||||| ||||| || | || | | || ||| || |||||||| |||| Sbjct 33323 TAGGCGCCGCGGTCGGCGGCCATGTCGAGCACGGCCTTCTGC-TTGATCTCCCACACGGT 33265 Query 152900 TTTGTACAAATTTTTAACGCTATCCGGTATACCTTCAATGTTCTGAATAGAGCCCTTGT- 152958 |||||| | || ||| ||||| || | | |||||| | ||||| | || Sbjct 33264 CTTGTACTTCTCCTTCACGGCGTCCGGGATCACGCGCACGTTCTGCACCGAGCCGTGGTC 33205 Query 152959 GTGCAAAAATAGCGTTTCGTATTTCGGGCGTGTACACGTTCAGTTTAATGAGGTCATCGA 153018 ||| | | | ||| || | |||||||| | | | || | ||||| || | | Sbjct 33204 GTGGAGGATCTG-GTTGCGCACCTCGGGCGTCCAGATGCCGAGCTCGATGAGCTCCTTCA 33146 Query 153019 TCAAGTACTGGTTGACCA-CTTGAAACTCGCCCGCCAACACTCGTCTCAAATATACATTG 153077 | | ||||| ||| || | | |||| |||||| || | ||| || | || | ||| Sbjct 33145 TGAGGTACTTGTTCACGATCGTGAA-CTCGCCAGCGAGCACGCGGCGGTTGTACATGTTG 33087 Query 153078 CTAGTGAAAGGTTCAAAGGATTCGTTATTGCCTAGTATTTGAGCCGTGGTTGCGGTCGGC 153137 | ||||| || || | || ||||| ||||| || || || || || | || |||||| Sbjct 33086 GTCGTGAACGGCTCGATCGACTCGTTGTTGCCGAGGATCTGCGCGGTCGACGCCGTCGGC 33027 Query 153138 ATGTACGCCACCAACAAAGAATTCCGCAAGCCGTGC-GCTCGAATGTCGTCCTTCAACGC 153196 || ||| | || || || || |||| ||||| | || ||| ||| |||| | ||| Sbjct 33026 ATCGGCGCGAGCAGCAGCGAGTTGCGCACGCCGTACTGCGCGACGCTCG-CCTTGAGCGC 32968 Query 153197 CTGCCAATCCCACAGCGCCGACGGTGTCG---CGTTCCACATGTCGTACTGTAACACTCC 153253 ||| ||||| || |||||| | || || |||||||||| |||| || | || Sbjct 32967 GGCCCAGTCCCAGAGACCCGACGTCGGCGTGACGCCCCACATGTCGAACTGGAAGATGCC 32908 Query 153254 TCGACTGGCGGGACTGCCGGCAAACGTACTGTAGCTGCCGT---CGCGTTGGGCCAGTTC 153310 || |||| || | | | | ||| ||||| | ||| || || || Sbjct 32907 CTTGCTCACGGGCGAACCCTCGTAGCTGCCGTACGGGCCGTGCTCCCGT---GCGAGCTC 32851 Query 153311 GCAGCTAG-CCTCGAGCGCGCCATAGTATATGGTTTCGGCGATTTGTTTATTGAGAACGG 153369 || | || |||| | |||||| |||| | || ||| ||| | || ||||| || Sbjct 32850 -CATCGAGGCCTCCATAGCGCCAAAGTACAGCGTCTCGAAGATGTTCTTGTTGAGCTCGC 32792 Query 153370 CCGCTTCTTCGCTCTCGTACGGCATGCGCAGCAGCACAAAGGCGTCGGCCAGACCCTGGA 153429 || || ||||||||| ||| || || || | || ||||| || |||||||| | Sbjct 32791 GGGCCTCGTCGCTCTCGAACGCGTAGCCCATGAGGATGAACGCGTCCGCGAGACCCTGCA 32732 Query 153430 TACCGACGCCGATGGGTCGATGCTTCTCGTTGCTGCGCCTCGCGCTCGCT-ATGGGATAG 153488 |||| |||||| || || || | |||||||||| ||| |||| || || ||| Sbjct 32731 CGCCGATGCCGATCGGGCGGTGGCGCAGGTTGCTGCGC-TCGGCCTCGGGGATCGGGTAG 32673 Query 153489 TGATTGCGATCGATAATTTTGTTGAGGTTGCGCACCACCACTTTAGTTATCGCCTTAAGT 153548 | ||| ||||| | ||||| ||||||||| || || || || || | | || Sbjct 32672 TAGTTGATGTCGATGACCTTGTTCAGGTTGCGCGTGACGACCTTGGTGATGTCGTAGAGC 32613 Query 153549 TTCTCGAAATCATAGGTCATTTCGTCGACGCGTACGCATCGATTCACGGCAATAGACGCC 153608 |||| ||| ||| ||||| | |||||| | | | | || || || || ||||| Sbjct 32612 TTCTTGAAGTCAAAGGTCTTGTCGTCGGT-CACAAACTTGGA--CAGCGCGATGGACGCG 32556 Query 153609 AGATTACAGACGGCCGTCTCTTCGG-CGTCGCTGTACTGCACGATCTCGGCGCAGAGGTT 153667 || || || || || ||| |||| || || |||||| | | |||| ||||||||| Sbjct 32555 AGGTTGCACACCGCGACCTCATCGGGCGACG-TGTACTCGAGCACCTCGCAGCAGAGGTT 32497 Query 153668 GCTGCATTTTATGACGCCCAAATTTTGCTGATTGCTTTTGCGATTGCACGCGTCTTTGAA 153727 ||| | || ||| | || ||||| || ||||| ||||||| ||| ||| | Sbjct 32496 GCTCGAGCGGATCGTGCCGAGGTTCTGCTGGTTCGACTTGCGGTTGCACGAGTCCTTGTA 32437 Query 153728 GAGCATGTACGGTCCGCCGGTCTCGACTTGCGTTTCGACGAT---AAACCTATGCAGGTC 153784 ||||||||||| ||| ||||||| |||| |||| ||| |||| || | Sbjct 32436 CAGCATGTACGGCGTGCCCGTCTCGATCTGCGACTCGAGGATCGCGAACC---AGAGCTG 32380 Query 153785 CTGCGCTCGCACCCGCTGCCGATAGCGGCCCTCGCTCTCGTATCGCTCGTACAGTCGCTC 153844 |||||| || | | || || ||||||||||| |||||| | | |||||| ||| Sbjct 32379 CTGCGCGCGGATCGTCTTGCGCGCGCGGCCCTCGCGCTCGTACTGGTGGTACAGCGCCTC 32320 Query 153845 AAACTCGTCGCCGTA-GCAGTCGGCGAGGCCGGGACACTGATGCGGACACATCAGCGACC 153903 ||||||||||| | | || | ||| || || || | ||| || | ||| || Sbjct 32319 GAACTCGTCGCCCCACGTCGT-GTAGAGCCCCGGCGCCTCGTTCGGGCAGAACAGGCTCC 32261 Query 153904 ACATATCGTCGGCGTTGACGCGTCGCATGAACAGATCCGGCACCCAGAGCGCGTACATGA 153963 || ||| ||| | |||||| |||||| ||||| || | ||| | |||||| | || Sbjct 32260 ACTCGCCGTTGGCCTCGACGCGCTTCATGAAGAGATCGGGGATCCACATCGCGTAGAAGA 32201 Query 153964 GGT--CGCGCGCCTTGCAATCCTCCGCGCCCATGTTGCGTTTCAGATTGA-GCACGCTAT 154020 | | ||||||| |||| ||| ||| ||| || || | | | || | | Sbjct 32200 GATCACGCGCGCGGTGCA--GCTCGTTGCCGTGGTTCTTCTTGAGGTCCAGGAACTCGA- 32144 Query 154021 AGATGTCGGCGTGCCAGGGTTCAATGTAGACGGCCAGGGCACCTTTACGCTT---TCCGC 154077 |||||||||||||||| || || | ||| | || | | || || ||||| |||| Sbjct 32143 AGATGTCGGCGTGCCACGGCTCCAGGTACATCGCGAACGAGCCCTTGCGCTTGCCGCCGC 32084 Query 154078 CCTGATCGACGTGGCGCACCATATTGTTGAAGACGCGCACCATGGGTTCCAGGCCGCTTG 154137 |||| ||||||| |||| || | | |||||||||||||| |||||| | |||||| | | Sbjct 32083 CCTGGTCGACGTAGCGCGCCGTGTCGTTGAAGACGCGCAGCATGGGCACGAGGCCGTTCG 32024 Query 154138 CGGTGCCGTTGGT----CGAATTGATCTTGCTGCCGCGGGCGCGCACTTGATGCACGTTA 154193 | |||||| || || | || | | | || ||||| | | |||||| | Sbjct 32023 ACGAGCCGTTCGTGCCGCGGA-TGTACGAGTT--CG-TCGCGCGGATGTTGTGCACGCTG 31968 Query 154194 ACGCCAATGCCGCCGCCGTACTTTGATATGGCAGCGCAGTCGCCCAGCGTCCTGTAGATG 154253 ||||| |||||||| | |||| || ||| ||||| | ||||| ||||||| Sbjct 31967 ACGCCGATGCCGCCAGCCCACTTGGAGATGCACGCGCACTGCTTGAGCGTGTCGTAGATG 31908 Query 154254 CCGTCGATGCTATCGTCGCGGACGCCGAGCAAGAAACACGAACACATTTGCGGAATGCGC 154313 || ||||| ||||| | | |||||| ||| ||||| ||| ||||| || Sbjct 31907 CCCTCGATCGAGTCGTCCTTCATGGCGAGCAGGAAGCACGACGACAGCTGCGGGCGCGGC 31848 Query 154314 GTTCCCGCCGAAAAGAGGGTGGGACTCGCGTGCGTAAACAGTTTTTGGCTCATCATGCGG 154373 || ||||| || || || || |||||||||| || | |||| ||| | Sbjct 31847 GTGCCCGCGTTGAACAGCGTCGGCGTCGCGTGCGTGAAGAAGCTTTGCGACATGTACTCG 31788 Query 154374 TACGTTTCGATGGCGTCTTCGATATCATCGCCGTGAATGCCGAGCGCGACGCGCATGAGC 154433 ||||| |||| || | || || || | ||| ||||||| ||||| |||| | | Sbjct 31787 TACGTCTCGAGCGCAGCGTCAATGTCGTGCTTGTGGATGCCGACGGCGACACGCAGAATC 31728 Query 154434 ATGTGCTGCGGACGTTCGGCGAC 154456 || ||||||||||| || ||||| Sbjct 31727 ATCTGCTGCGGACGCTCCGCGAC 31705 >seq6188 Length=1366 Score = 109 bits (120), Expect = 5e-19 Identities = 158/215 (73%), Gaps = 6/215 (3%) Strand=Plus/Plus Query 52626 ATCGAAAAGGAGTTTTTTACGGCCGCGCTGCCGGTCGAGCTGCTGGGCATGAACGCGCAG 52685 || || |||||||| | || | |||| |||||||||||| | ||||||||| || | Sbjct 1 ATTGAGAAGGAGTTCGTCCAGGACTCGCTTCCGGTCGAGCTGATCGGCATGAACTCGTCG 60 Query 52686 TCCATGTGCGAGTACATCGAGTT-TGTGGCGGATCGTCTGTTGGT-GCAGCTCGGGCAGC 52743 ||||||| ||||||| ||||| |||| || |||| || | ||| | | | || Sbjct 61 CTCATGTGCCAGTACATTGAGTTCTGTGCCG-ATCGCCTCCTCCACGCACTTGGTGTCGC 119 Query 52744 CAAAGTACTTCAACGC-TCGCAATCCGTTTGAGTTTATGAACAACATTTCGCTTGAGGGC 52802 ||| | || ||| | ||| || ||||| || | ||| ||| || ||||| ||||| Sbjct 120 CAAGAT-CTACAAGGTGTCG-AACCCGTTCGACTGGATGGACATGATCTCGCTCCAGGGC 177 Query 52803 AAGACCAACTTTTTCGAGAAGCGAGTCGGCGAGTA 52837 ||||||||||| ||||||||||| || |||||||| Sbjct 178 AAGACCAACTTCTTCGAGAAGCGCGTGGGCGAGTA 212 >seq2702 Length=56295 Score = 102 bits (112), Expect = 8e-17 Identities = 141/195 (72%), Gaps = 2/195 (1%) Strand=Plus/Minus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 |||||||| || ||||||||||| | || || ||||||||| || || |||| Sbjct 26958 GACTCCTTCTGGATGTTGTAGTCCGAGAGCGTGCGGCCGTCCTCGAGCTGCTTGCCGGCG 26899 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTA-A 138539 |||| || ||||| || |||||||| || || || ||||| ||| || || || | | Sbjct 26898 AAGATCAGGCGCTGCTGATCCGGAGGGATTCCCTCCTTGTCCTGGATCTTCTGCTTGACA 26839 Query 138540 TTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTT 138599 ||| || | | |||| | | ||| || |||| ||| | ||| || || |||||||| || Sbjct 26838 TTG-TCAATGCTGTCCGAAGGCTCGACGTCGAGCGTGATCGTCTTGCCGGTCAGAGTCTT 26780 Query 138600 TACAAAAATCTGCAT 138614 || || |||||||| Sbjct 26779 GACGAAGATCTGCAT 26765 >seq1220 Length=9499 Score = 93.3 bits (102), Expect = 4e-14 Identities = 158/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 138387 GCCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCT 138446 ||| || |||| ||||| || | || | | |||||||| || ||||||||||| Sbjct 261 GCCACCACGCAGACGCAGCACCAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCCGA 202 Query 138447 CATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGG 138506 || || || |||||| || || || || | |||| || ||||| |||||||| || Sbjct 201 CAGCGTGCGGCCGTCCTCCAGCTGCTTGCCAGCGAAGATCAGGCGCTGCTGGTCCGGCGG 142 Query 138507 TATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCAC 138566 || || || ||||| || || || || | | || | | ||| | || |||||| Sbjct 141 AATGCCCTCCTTGTCCTGAATCTTCTGCTTGACGTTGTCGATCGAGTCCGACGGCTCCAC 82 Query 138567 CTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCATG 138615 |||| ||| | ||| || || ||||| || || || || ||||||||| Sbjct 81 GTCGAGCGTGATCGTCTTGCCCGTCAGCGTCTTCACGAAGATCTGCATG 33 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496206620106240