Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pythium_20insidiosum_20[genbank_20GCA_5F000764265.1_202014-10-06] 8,992 sequences; 45,609,708 total letters Query= NC_011616.1 Length=148634 Score E Sequences producing significant alignments: (Bits) Value seq3132 192 6e-44 seq2702 145 7e-30 seq1220 136 4e-27 seq4347 98.7 9e-16 >seq3132 Length=41768 Score = 192 bits (212), Expect = 6e-44 Identities = 340/491 (69%), Gaps = 6/491 (1%) Strand=Plus/Minus Query 145719 GTCGACGGTGAACTGCGTCGCTTGAGCGGCCGGTTTTGTGCGCAGATAGTACATGCCGGT 145778 |||||| |||||||| |||| | || |||| |||||||| ||||||||||| || Sbjct 33480 GTCGACCGTGAACTGAATCGCGTCGGCCTTCGGTCGCGTGCGCAGGTAGTACATGCCCGT 33421 Query 145779 CTTGAGCTGTTTCTGCCACGTGTAAAAGTGTATGCTCGACA--TGACCGAGTACGTGGGT 145836 |||||| |||| ||||| ||| ||||| ||| || || | | || ||| || Sbjct 33420 CTTGAGACCCTTCTTCCACGCGTAGAAGTGCATGGACGTCAGCTTGCTGAT--CGTCGGC 33363 Query 145837 TCGGCGACAAACAAATTTAGAGATTGGCTCTGATCAATGAAAGGAGCC-CGGTCGGCGGC 145895 || |||| || || || || |||||||| ||| | || ||| ||||||||||| Sbjct 33362 TCCGCGATGTGCACGTTGAGCGACTGGCTCTGGCAGATGTA-GGCGCCGCGGTCGGCGGC 33304 Query 145896 CATGTCTATCATGCACTTTGATTTAATTTCCCATGCGGTTTTAAAGAGATCCTTGACGTG 145955 |||||| | || | ||| || || ||||| |||| || | ||||| ||| Sbjct 33303 CATGTCGAGCACGGCCTTCTGCTTGATCTCCCACACGGTCTTGTACTTCTCCTTCACGGC 33244 Query 145956 CTGGGGTATTTCGTCAATGTTCTGCACAGACCCATTTTCGGCCAATATTTTGTTGCGCAA 146015 | || || || | ||||||||| || || | ||| | || | |||||||| Sbjct 33243 GTCCGGGATCACGCGCACGTTCTGCACCGAGCCGTGGTCGTGGAGGATCTGGTTGCGCAC 33184 Query 146016 TTCTGGAGTGTAAATGTTCAAGTCTACGAGGGCCTTGATGAGATACTGGTTGACCACCTG 146075 || || || | ||| | || | ||| |||| ||||| |||| ||| || | | Sbjct 33183 CTCGGGCGTCCAGATGCCGAGCTCGATGAGCTCCTTCATGAGGTACTTGTTCACGATCGT 33124 Query 146076 AAACTCGCCGGCGAGAACGCGCCTCAGATACACGTTGCTGGTGAACGGCTCGAACGACTC 146135 |||||||| ||||| ||||| | |||| |||| | ||||||||||||| |||||| Sbjct 33123 GAACTCGCCAGCGAGCACGCGGCGGTTGTACATGTTGGTCGTGAACGGCTCGATCGACTC 33064 Query 146136 GTTGTTACCGAGTATCTGCGCCGTCGTAGCGGTAGGCATGTACGCCACCAGCAAAGAGTT 146195 |||||| ||||| |||||||| |||| || || ||||| ||| | ||||| ||||| Sbjct 33063 GTTGTTGCCGAGGATCTGCGCGGTCGACGCCGTCGGCATCGGCGCGAGCAGCAGCGAGTT 33004 Query 146196 TCTCACGCCGT 146206 | |||||||| Sbjct 33003 GCGCACGCCGT 32993 >seq2702 Length=56295 Score = 145 bits (160), Expect = 7e-30 Identities = 170/230 (74%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 126884 GCTCCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCG 126943 || ||||| || | || | ||||| || | ||| ||||| || || || ||||| || Sbjct 26994 GCACCACCACGCAGGCGGAGCACCAGGTGGAGCGTCGACTCCTTCTGGATGTTGTAGTCC 26935 Query 126944 CCCATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGA 127003 | |||||| || || ||||| || || ||| |||||| ||||||||||| ||| Sbjct 26934 GAGAGCGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGATCCGGA 26875 Query 127004 GGTATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCG 127063 || || |||||||||||| ||| |||||||||| | || | | |||||| | |||| Sbjct 26874 GGGATTCCCTCCTTGTCCTGGATCTTCTGCTTGACATTGTCAATGCTGTCCGAAGGCTCG 26815 Query 127064 ACTTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 || |||| || | ||| |||||||||||||| || || || |||||||| Sbjct 26814 ACGTCGAGCGTGATCGTCTTGCCGGTCAGAGTCTTGACGAAGATCTGCAT 26765 >seq1220 Length=9499 Score = 136 bits (150), Expect = 4e-27 Identities = 169/229 (74%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 ||||| || | |||| ||||| || | ||| ||||| || || || ||||| || | Sbjct 260 CCACCACGCAGACGCAGCACCAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCCGAC 201 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | |||||| || || ||||| || |||||| |||||| |||||||| || || || Sbjct 200 AGCGTGCGGCCGTCCTCCAGCTGCTTGCCAGCGAAGATCAGGCGCTGCTGGTCCGGCGGA 141 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGA-GTTGTTCGACGGTGTCCGTACTCTCGAC 127065 ||||||||||||||| || |||||||||| |||| |||| | ||||| ||| || Sbjct 140 ATGCCCTCCTTGTCCTGAATCTTCTGCTTGACGTTG-TCGATCGAGTCCGACGGCTCCAC 82 Query 127066 TTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 127114 |||| || | ||| ||||| ||||| || || || || ||||||||| Sbjct 81 GTCGAGCGTGATCGTCTTGCCCGTCAGCGTCTTCACGAAGATCTGCATG 33 >seq4347 Length=93765 Score = 98.7 bits (108), Expect = 9e-16 Identities = 295/443 (67%), Gaps = 23/443 (5%) Strand=Plus/Minus Query 47146 TCGCTTTCGCCATCGTCGAGGGCGTCTTCTTCTCGGGCAGCTT-TGCGGCGATATTTTAC 47204 |||| ||||| ||| |||||| | |||||||||||| || ||| | || || | Sbjct 72865 TCGCGTTCGCTGCCGTTGAGGGCATTTTCTTCTCGGGCTCGTTCTGCTCC-ATCTTCTGG 72807 Query 47205 ATGAAAACCAAAGGAGTTATGCCCGGCCTCACGTTTAGCAACGAGCTAATCTCGAGAGAC 47264 | || | || | ||||| ||||||| || |||||||| |||||| | || Sbjct 72806 CTCAAGAAGCGTGGTCTCATGCCTGGCCTCAGCTTCTCGAACGAGCTCATCTCGCGCGAT 72747 Query 47265 GAAGGCCTGCACACCAACTT----TGCCTGTCTCTACTACAACACTAGAGTCGATCAA-A 47319 || ||||| ||| | |||| |||||| || |||| ||| || | |||| | Sbjct 72746 GAGGGCCTCCACTGCGACTTCGCTTGCCTG-CTGTACTCCAAG-CTTG------TCAACA 72695 Query 47320 AGTT---GGACGTGCCCACCGTCAGCGACATGTTTGCCGAAGCCGTCGCCATTGAGATGG 47376 || | ||| || || | || || || || ||| |||||||| ||||||| || Sbjct 72694 AGCTCCCGGAGTCGCGCATC--CAT-GAGATCATTCGCGATGCCGTCGCGATTGAGAAGG 72638 Query 47377 AGTTTTTCGCCGAGGCTCTGCCCGAATCTTTAGTGGGAATGAACGCGGAGATGATGAGAA 47436 |||| || || | || || | | | || |||||| || | | ||| | Sbjct 72637 AGTTCGTCCAGGACTCGCTTCCGGTCGAGCTGATCGGCATGAACTCGTCGCTCATGTGCC 72578 Query 47437 AGTACATCGAATTTGTCGCCGACCGCCTGCTCGTTCAGCTAAAGTATC-CCAAGATTTAC 47495 |||||||||| || |||||| ||||| ||| ||| || || ||||||||||| Sbjct 72577 AGTACATCGAGTTCTGCGCCGATCGCCTCCTCCACGCGCTTG-GTGTCGCCAAGATTTAC 72519 Query 47496 CACACCGAGAATCCATTCGAGTTTATGAACAACATTTCGCTCGAGGGCAAGACCAACTTT 47555 | ||| || || || | ||| ||| || |||||| |||||||||||||||| Sbjct 72518 AAGGTGTCGAACCCGTTTGACTGGATGGACATGATCTCGCTCCAGGGCAAGACCAACTTC 72459 Query 47556 TTCGAGAAGCGCGTCGGCGAATA 47578 |||||||||||||| ||||| || Sbjct 72458 TTCGAGAAGCGCGTTGGCGAGTA 72436 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 475447353710080