Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pythium_20insidiosum_20[genbank_20GCA_5F000764265.1_202014-10-06] 8,992 sequences; 45,609,708 total letters Query= NC_012639.1 Length=141291 Score E Sequences producing significant alignments: (Bits) Value seq3132 145 7e-30 seq1220 96.9 3e-15 >seq3132 Length=41768 Score = 145 bits (160), Expect = 7e-30 Identities = 297/436 (68%), Gaps = 9/436 (2%) Strand=Plus/Plus Query 122898 AAGGTCGCCGAACGTATTCAACATATGCTCATGCGCGTCGCTATAGGCGTGCACGGACGC 122957 |||||||| || ||| || || ||| | |||| ||||| | ||| | ||| | | Sbjct 31702 AAGGTCGCGGAGCGTCCGCAGCAGATGATTCTGCGTGTCGCCGTCGGCATCCACAAGCAC 31761 Query 122958 GACATCGAAAACGCGACCGAAACTTACGATTTGATGTCTCAAAAATTTTTCACGCACGCG 123017 ||||| || ||| ||| || ||||| | ||||| |||| || |||||||||||| Sbjct 31762 GACATTGACGCTGCGCTCGAGACGTACGAGTACATGTCGCAAAGCTTCTTCACGCACGCG 31821 Query 123018 AGTCCCACTTTGTTCGCCGCCGGCACGAAGTTGCCTCAGTTGTCTTCGTGTTTTTTGCTC 123077 | || || ||||| ||| |||||| | || ||| |||| ||||| || ||||| Sbjct 31822 ACGCCGACGCTGTTCAACGCGGGCACGCCGCGCCCGCAGCTGTCGTCGTGCTTCCTGCTC 31881 Query 123078 ACCTTGCGCGAAGACAGCATCACCGGTATCTATGAAACTTTGCGCGATTGCGCGTTGATT 123137 || || || ||| ||| || ||||| || || | | ||||||| || Sbjct 31882 GCCATGAAGGACGACTCGATCGAGGGCATCTACGACACGCTCAAGCAGTGCGCGTGCATC 31941 Query 123138 TCCAAATTTGGCGGCGGCATAGGCGTGAACGTGCACGACGTAAGAGGCCGCGGAAGCCG- 123196 ||||| | | |||||||| ||||| | ||||||| || | | | || ||| || Sbjct 31942 TCCAAGTGGGCTGGCGGCATCGGCGTCAGCGTGCACAACATCCGCG--CGACGAACTCGT 31999 Query 123197 -CATCAGAAGCACCGACGGAATCG-CCTCCGGGCTCGAATCCATGCTGCGAGTTTACAAT 123254 |||| | |||| |||| ||| | ||| |||| |||||||||| || | ||| Sbjct 32000 ACATCCGCGGCACGAACGG-CTCGTCGAACGGCCTCGTGCCCATGCTGCGCGTCTTCAAC 32058 Query 123255 AACGCCGTGCGGCACGTCGACCAG---GGCGGCAAACGCAAAGGCGCGATGGCGATCTAT 123311 || | | ||| ||||||||||| |||||||| ||||| ||| || | ||||| || Sbjct 32059 GACACGGCGCGCTACGTCGACCAGGGCGGCGGCAAGCGCAAGGGCTCGTTCGCGATGTAC 32118 Query 123312 CTAGAACCGTGGCACG 123327 || || |||||||||| Sbjct 32119 CTGGAGCCGTGGCACG 32134 Score = 93.3 bits (102), Expect = 4e-14 Identities = 400/622 (64%), Gaps = 13/622 (2%) Strand=Plus/Plus Query 124056 CACGGCGCGTACGAAAGTTACGCGGGCAGCCCGGCGAGCCGAGGTATTTTGCAGTACGAC 124115 |||||| |||||| || |||| ||| || | |||| || || || |||| |||| Sbjct 32866 CACGGCCCGTACGGCAGCTACGAGGGTTCGCCCGTGAGCAAGGGCATCTTCCAGTTCGAC 32925 Query 124116 ATGTGGAATGCTACACCGACAAA---TTTGTGGGACTGGAGCGTTTTAAAACAACGCATA 124172 |||||| | || ||||| | | ||||||||| || | || || | Sbjct 32926 ATGTGGGGCGTCACGCCGACGTCGGGTCTCTGGGACTGGGCCGCGCTCAAGGCGAGCGTC 32985 Query 124173 TCGACGCACGGTTTGCGTAACTCGCTGTTGGTGGCGTACATGCCGACGGCAACCACTGCT 124232 || | |||| |||| ||||||||| || | ||| ||||||||||| | || || Sbjct 32986 GCGCAGTACGGCGTGCGCAACTCGCTGCTGCTCGCGCCGATGCCGACGGCGTCGACCGCG 33045 Query 124233 CAAATTTTAGGAAACAACGAATCCTTCGAGCCGTTCACTAACAATTTGTACGTGCGACGA 124292 || || | || |||||||| || ||||||||||||| | ||| ||||| || || Sbjct 33046 CAGATCCTCGGCAACAACGAGTCGATCGAGCCGTTCACGACCAACATGTACAACCGCCGC 33105 Query 124293 GTGTTAGCCGGCGATTTT-CAA--GTGATAAATCATCATTTGGTGGACGACTTGGTGGCG 124349 ||| | || ||||| || | | |||| || | | || ||| | | | | | Sbjct 33106 GTGCTCGCTGGCGAGTTCACGATCGTGAACAAGTACCTCATGAAGGAGCTCATCGAG-CT 33164 Query 124350 TTAAATTTGTACGATGAAAACATGCGCAACGAAATTATTGCGGCCGGTGGCAGCGTGCAG 124409 || || ||| | |||||||| | || | | | ||| |||||| Sbjct 33165 CGGCATCTGGACGCCCGAGG--TGCGCAACCAGATCCTCCACGACCACGGCTCGGTGCAG 33222 Query 124410 CGCAT-CGCTTCGATTCCGGAACACGTCAAGCAACTGTACAAAACCGTGTGGGAAATGAA 124468 | | ||| | ||| ||||| ||| ||| | |||||| ||||||||||| || || Sbjct 33223 AACGTGCGCGT-GATCCCGGACGCCGTGAAGGAGAAGTACAAGACCGTGTGGGAGATCAA 33281 Query 124469 AAATAAACGATTAATTGAAATGGCCGTCGACCGAGGCGCGTACACGGATCAAAGTCAATC 124528 | || | | || ||||||| |||||| ||||| |||| || || || || Sbjct 33282 GCAGAAGGCCGTGCTCGACATGGCCGCCGACCGCGGCGCCTACATCTGCCAGAGCCAGTC 33341 Query 124529 TTTTAACGTGTTTGTAGCGGAACCCACCTAC-GCCCGCATGACCAGCATACACATGCACG 124587 | |||||| | ||||| || || | || || |||| ||| ||| | ||| Sbjct 33342 GCTCAACGTGCACATCGCGGAGCCGACGATCAGCAAGC-TGACGTCCATGCACTTCTACG 33400 Query 124588 CGTGGAGCAGCGGACTCAAAACGGGCATGTATTACTTAAGAACCAAACCGGCGGCCGATG 124647 |||||| | || ||||| ||||||||||| ||| | | || |||| |||||| | Sbjct 33401 CGTGGAAGAAGGGTCTCAAGACGGGCATGTACTACCTGCGCACGCGACCGAAGGCCGACG 33460 Query 124648 CCATTCAATTTACCGTCGACAA 124669 | ||||| || || |||||||| Sbjct 33461 CGATTCAGTTCACGGTCGACAA 33482 >seq1220 Length=9499 Score = 96.9 bits (106), Expect = 3e-15 Identities = 162/230 (70%), Gaps = 6/230 (3%) Strand=Plus/Minus Query 45114 CCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTG 45173 || || || || | || ||| || |||||||| || ||||| ||||| || || || | Sbjct 260 CCACCACGCAGACGCAGCACCAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCC--G 203 Query 45174 ACGGTTTTAGAA--TCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCG 45231 || | | | || |||| || || || ||| | |||| || ||||||||||||| Sbjct 202 ACAGCGTGCGGCCGTCCTCCAGCTGCTTGCCAGCGAAGATCAGGCGCTGCTGGTCCGGCG 143 Query 45232 GAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTCG 45290 ||||||| || || || ||||| || || |||| || | || | | ||| || | ||| Sbjct 142 GAATGCCCTCCTTGTCCTGAATCTTCTGCTTGA-CGTTGTCGATCGAGTCCGACGGCTCC 84 Query 45291 ACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 || ||||| || | ||| ||||| || || || || || || || ||||| Sbjct 83 ACGTCGAGCGTGATCGTCTTGCCCGTCAGCGTCTTCACGAAGATCTGCAT 34 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 451952394840320