Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pythium_20insidiosum_20[genbank_20GCA_5F000764265.1_202014-10-06] 8,992 sequences; 45,609,708 total letters Query= NC_013288.1 Length=191761 Score E Sequences producing significant alignments: (Bits) Value seq3132 250 3e-61 seq4347 188 9e-43 seq7148 98.7 1e-15 >seq3132 Length=41768 Score = 250 bits (276), Expect = 3e-61 Identities = 1116/1746 (64%), Gaps = 65/1746 (4%) Strand=Plus/Minus Query 115558 CGGAGGTAGTACATCCCCGTCTTGAGCCCCTGCTTCCAGGCATACATATGCATTGAGGAC 115617 || ||||||||||| ||||||||||| |||| |||||| || || | ||||| || | | Sbjct 33440 CGCAGGTAGTACATGCCCGTCTTGAGACCCTTCTTCCACGCGTAGAAGTGCATGGACGTC 33381 Query 115618 AACTTGGAGAGTGTTGGACTTTCCATGAAGAGGTTCATACTTTGGGATTGATCGATGAAG 115677 | |||| || || || | ||| | ||| | ||| || |||| || Sbjct 33380 AGCTTGCTGATCGTCGGCTCCGCGATGTGCACGTTGAGCGACTGGCTCTGGCAGATGTAG 33321 Query 115678 CGTCCCCGATCCGCCGCCATATCAATCACATCCTTCATCTTGATTTCCCACACAGTTCTG 115737 || || || || ||||| || | ||| ||||| |||||| |||||||| || || Sbjct 33320 GCGCCGCGGTCGGCGGCCATGTCGAGCACGGCCTTCTGCTTGATCTCCCACACGGTCTTG 33261 Query 115738 TAGAGGTTCTTAATATCATCTGGGATATC---CACGATATTTTGGATAGAGCCACCTGCC 115794 || | ||| | | || ||||| | |||| || || | ||||| | Sbjct 33260 TACTTCTCCTTCACGGCGTCCGGGATCACGCGCACG---TTCTGCACCGAGCCGTGGTCG 33204 Query 115795 TTGACCATGAGATCCTTCATATCCTTTGACCAGAGACCAATCTTCTTGAGATCCTCCACG 115854 | || || | | || || | ||||| || | || |||| |||| || | Sbjct 33203 TGGAGGATCTGGTTGCGCACCTCGGGCGTCCAGATGCCGAGCTCGATGAGCTCCTTCATG 33144 Query 115855 AGGTGCTTATTGACAACAACAAACTCACCCGCGAGGGTGCGTCTCAGATAGATGTTGGTC 115914 |||| ||| || || | ||||| || ||||| ||| | || ||||||||| Sbjct 33143 AGGTACTTGTTCACGATCGTGAACTCGCCAGCGAGCACGCGGCGGTTGTACATGTTGGTC 33084 Query 115915 GTGTATGGCTCAAAGCACTCATTGTTACCCAAGATTTGGGCTGTGGAGGCTGTGGGCATG 115974 ||| | ||||| | |||| ||||| || | ||| || || || || || || ||||| Sbjct 33083 GTGAACGGCTCGATCGACTCGTTGTTGCCGAGGATCTGCGCGGTCGACGCCGTCGGCATC 33024 Query 115975 GGTGCCATGAGAAGGCTGTTGCGGAGACCCACCCCCCTAATGCGTTCCTTGAGGGCGTCC 116034 || || | || || |||||| | || | | | || ||||||| ||| || Sbjct 33023 GGCGCGAGCAGCAGCGAGTTGCGCACGCCGTACTGCGCGACGCTCGCCTTGAGCGCGGCC 32964 Query 116035 CAGTCGTAGTTGAGCTTTGTCTCCC---CCTCCCACATATCAAACTGGAGGATACCTTGG 116091 ||||| || | ||| | | ||||||| || ||||||| ||| || | | Sbjct 32963 CAGTCCCAGAGACCCGACGTCGGCGTGACGCCCCACATGTCGAACTGGAAGATGCCCTTG 32904 Query 116092 GACGCTGGCGATCCCTCAAATGTCTCATATGGGCCCTCAACCTCCGCCAATTCGGAGCTC 116151 | | ||||| ||||| | | | || ||||| | || || |||||| Sbjct 32903 CTCACGGGCGAACCCTCGTAGCTGCCGTACGGGCCGTGCTCCCGTGC-------GAGCTC 32851 Query 116152 GCCTCGAGGGCT-----GCGTGA---TACATTGTCTCAAAAATGCGAGCATTCATTGCCT 116203 | |||||| || ||| | |||| ||||| || ||| || | | Sbjct 32850 -CATCGAGGCCTCCATAGCGCCAAAGTACAGCGTCTCGAAGATGTTCTTGTTGAGCTCGC 32792 Query 116204 TGGCCTCGTCGGAATCAAACGCG-AGACGGCACAAA-ATAAATACATCCGCGAGACCTTG 116261 |||||||||| || |||||| || | || | || || | ||||||||||| || Sbjct 32791 GGGCCTCGTCGCTCTCGAACGCGTAGCC--CATGAGGATGAACGCGTCCGCGAGACCCTG 32734 Query 116262 GACACCGAGGCCAATTGGGCGATGTCTCATATTAGACTTTCGAGCGGTCTCCACG---GG 116318 || |||| ||| || ||||| || | || || | || ||| ||| | || Sbjct 32733 CACGCCGATGCCGATCGGGCGGTGGCGCAGGTTGC---TGCGCTCGGCCTCGGGGATCGG 32677 Query 116319 ATAAAAATTCCTATCGATAACCCTATTTAGATTTTTGGTGACAACCTTTGTGATTTCATG 116378 || | || | ||||| ||| | || || || ||||| ||||| ||||| || | Sbjct 32676 GTAGTAGTTGATGTCGATGACCTTGTTCAGGTTGCGCGTGACGACCTTGGTGATGTCGTA 32617 Query 116379 AAGCTTTTCGTAATCAAAACTGCGAGTCTCTTCATTGACATACTTAGGAAGGGCGATTGA 116438 ||||| | | | ||||| | | || || | ||| |||| | || ||||| || Sbjct 32616 GAGCTTCTTGAAGTCAAAGGTCT---TGTCGTCGGTCACAAACTTGGACAGCGCGATGGA 32560 Query 116439 CGCCAGATTACACACAGAGGTCTCATCCTTATCAGTGTACTCTATAATTTCCGTACACAA 116498 ||| || || ||||| | | |||||| |||||||| | | || || | Sbjct 32559 CGCGAGGTTGCACACCGCGACCTCATCGGGCGACGTGTACTCGAGCACCTCGCAGCAGAG 32500 Query 116499 ATTTGAACTCTTA---ATGGTGCCCAAGTTCTTTTGATTTGACTTTGTGTTACACGCATC 116555 || ||| || ||||| | ||||| || || ||||| ||| |||| || Sbjct 32499 GTTG---CTCGAGCGGATCGTGCCGAGGTTCTGCTGGTTCGACTTGCGGTTGCACGAGTC 32443 Query 116556 CTTGTAGAGCATATATGGCGTCCCCGTCTCCGTTTGGGACTTGAGAATAGCCTTCCATAC 116615 |||||| ||||| || ||||| |||||||| | || |||| ||| || || ||| | Sbjct 32442 CTTGTACAGCATGTACGGCGTGCCCGTCTCGATCTGCGACTCGAGGATCGCGAACCAGA- 32384 Query 116616 ATCGGCGGCTG-GCACAG-TGGCGTTG---GCTCGCCCCTCCTCCTCGTACTTTGTGTAG 116670 || |||| || | | | | ||| || || ||||| |||||||| ||| Sbjct 32383 ----GCTGCTGCGCGCGGATCGTCTTGCGCGCGCGGCCCTCGCGCTCGTACTGGTGGTAC 32328 Query 116671 AGGGCCTCAAACTCTTCACCC-ACAGCCTCTGAGAGCCCTGGTGCCTTATCTGGACAGAA 116729 || ||||| ||||| || ||| || | | | ||||||| || |||| | || ||||| Sbjct 32327 AGCGCCTCGAACTCGTCGCCCCACGTCGTGT-AGAGCCCCGGCGCCTCGTTCGGGCAGAA 32269 Query 116730 GAGAGACCATTGACCACCCTCCTCAACCCGCTTCATGAAGAGGTCTGGGATCCAGAGCGC 116789 || ||| | || |||| || |||||||||||||| || |||||||| | ||| Sbjct 32268 CAGGCTCCACTCGCCGTTGGCCTCGACGCGCTTCATGAAGAGATCGGGGATCCACATCGC 32209 Query 116790 CGAGAAGAGATCCCGACAGCGA-GCTTCTTCATCCCCCTGATTGAGACGCAACTCCAAAA 116848 |||||||||| || ||| || || | | || || || | |||| | Sbjct 32208 GTAGAAGAGATCACGCGCGCGGTGCAGCT-CGTTGCCGTGGTTCTTCTTGAGGTCCAGGA 32150 Query 116849 AGTCCATGATATCCGCGTGCCACGGTTCCAGGTACACCGCGATTGACCCCTTGCGA---C 116905 | || | ||| || ||||||||||| |||||||||| ||||| || |||||||| | Sbjct 32149 ACTCGAAGATGTCGGCGTGCCACGGCTCCAGGTACATCGCGAACGAGCCCTTGCGCTTGC 32090 Query 116906 GACCAGCCTGGTTTACATACCTCGCCGTTGCGTTAAATACGCGAAGCATTGGAATGATAC 116965 || |||||| || || | |||||| |||| || ||||| ||||| || | || | Sbjct 32089 CGCCGCCCTGGTCGACGTAGCGCGCCGTGTCGTTGAAGACGCGCAGCATGGGCACGAGGC 32030 Query 116966 CATCAGATTGGCCATTTGTCCCCCGAAT--ACGAGACTTGTTGGCTCTGACATCGTGGAT 117023 | | || ||| || || || || || ||||| || | || | || | ||| | Sbjct 32029 CGTTCGACGAGCCGTTCGTGCCGCGGATGTACGAG--TTCGTCGCGCGGATGTTGTGCAC 31972 Query 117024 GTGCATACCAATACCCCCTGCCCACTTTGAGATTTGTGCGCACTCCGTGAGACTGCCGTA 117083 | | || || || || |||||||| ||||| ||||||| | |||| || |||| Sbjct 31971 GCTGACGCCGATGCCGCCAGCCCACTTGGAGATGCACGCGCACTGCTTGAGCGTGTCGTA 31912 Query 117084 GATCCCATCGATCGAGTCACCCTTATTTGCGATGAGGAAGCAGCTCGACATTTGTGGCCT 117143 ||| || ||||||||||| |||| | |||| |||||||| ||||| || || | Sbjct 31911 GATGCCCTCGATCGAGTCGTCCTTCATGGCGAGCAGGAAGCACGACGACAGCTGCGGGCG 31852 Query 117144 TGGTGTACCAGCGTTGAAGAGGGTTGGTGTCGCGTGGATGAACATACCTTGGGACATCTT 117203 || || || |||||||| || || || |||||||| |||| | | ||| ||||| | Sbjct 31851 CGGCGTGCCCGCGTTGAACAGCGTCGGCGTCGCGTGCGTGAAGAAGCTTTGCGACATGTA 31792 Query 117204 ATCGTAGGTCTCCAAGACAGAGGGAATGTCTTCCCCGTGAATACCGATTGAGACCCGCAT 117263 ||||| ||||| | ||| | |||||| | | ||| || |||| | ||| |||| Sbjct 31791 CTCGTACGTCTCGAGCGCAGCGTCAATGTCGTGCTTGTGGATGCCGACGGCGACACGCAG 31732 Query 117264 AAACAT 117269 || ||| Sbjct 31731 AATCAT 31726 >seq4347 Length=93765 Score = 188 bits (208), Expect = 9e-43 Identities = 396/580 (68%), Gaps = 14/580 (2%) Strand=Plus/Plus Query 127231 GTAGTCCCCGACCCGCTTCTCGAAGAAGTTTGTCTTCCCATCGAGGCTGATATTCTCCAT 127290 ||| || || || ||||||||||||||||| ||||| || | ||| ||| | ||||| Sbjct 72435 GTACTCGCCAACGCGCTTCTCGAAGAAGTTGGTCTTGCCCTGGAGCGAGATCATGTCCAT 72494 Query 127291 AAAATCAAATGGGTTCTTTGAGTTCCAAATTGTTGGC-ACCCCAATCTGTTTGAGGAGAC 127349 | ||||| |||||| || |||| ||||| || |||| | | |||||| | Sbjct 72495 CCAGTCAAACGGGTTCGACACCTTGTAAATC-TTGGCGACACCAAGCGCGTGGAGGAGGC 72553 Query 127350 GATCCGAGACGTACTCAATGTACTCAGACATCTTCTCAGAGTTCATACCGATGAGGTTAC 127409 |||| | | | |||| ||||||| |||| | |||||||| ||||| || | Sbjct 72554 GATCGGCGCAGAACTCGATGTACTGGCACATGAGCGACGAGTTCATGCCGATCAGCTCGA 72613 Query 127410 ATGGGAGCGCGTCCAAGATGAACCCCTTCTCAATGTCCACAGCTTCCCGTACGATGGCGT 127469 || |||| |||| || |||| |||||||||| | || || || || | ||| | | Sbjct 72614 CCGGAAGCGAGTCCTGGACGAACTCCTTCTCAATCGCGACGGCATCGCGAATGATCTCAT 72673 Query 127470 GAATAGTGTCCACCCCAGGTCTATTGCGTAAAGTCTTGAAGAGTTCCACAG-----CAAA 127524 | || | | | || || || | | ||| |||| |||| | ||| | || Sbjct 72674 GGAT-GCG-CGACTCCGGGAGCTTGTTGACAAG-CTTG--GAGTACAGCAGGCAAGCGAA 72728 Query 127525 CTCTTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCAT 127584 || |||||| ||||| || || |||||||| || |||||||||| || || ||||| Sbjct 72729 GTCGCAGTGGAGGCCCTCATCGCGCGAGATGAGCTCGTTCGAGAAGCTGAGGCCAGGCAT 72788 Query 127585 GAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTC 127644 |||||| |||||||| | |||||| || | || || ||||| |||||||| || ||||| Sbjct 72789 GAGACCACGCTTCTTGAGCCAGAAGATGGAGCAGAACGAGCCCGAGAAGAAAATGCCCTC 72848 Query 127645 CACACACGCGAACGCAAATAGACGCTCGGC-AAAGGAGCGGGACTTTGTATCAAACCACT 127703 || |||||||| | | ||||| || |||| ||| | | | || |||||| Sbjct 72849 AACGGCAGCGAACGCGACAATGCGCTCAGCAAAAGCCGCGCGGC-GCGAGTCGCACCACT 72907 Query 127704 TCATCGCCCACTGTGCCTTTTTCTCGATACATGGGACGGTCTGGATCGCTTCAAAGAGTT 127763 | | |||||| || ||||| |||| | ||||| | ||||| ||| || | ||| | Sbjct 72908 TGAGCGCCCAGTGCGCCTTCTTCTGCACGCATGGAATGGTCTCGATGGCGCGGAGGAGGT 72967 Query 127764 CCTTCTTTTCTGATGGATCTTTGATGTACTTATCTATGAG 127803 ||||| || | | || ||||||||| | || ||||| Sbjct 72968 GGTTCTTCTCCGTCTGGTCCTTGATGTACGTGTCAATGAG 73007 >seq7148 Length=46129 Score = 98.7 bits (108), Expect = 1e-15 Identities = 120/164 (73%), Gaps = 0/164 (0%) Strand=Plus/Minus Query 176828 AGAGGGAACACACCGTAGTGATCACGACCAACCACAGAGAGACCAGCAACTGCGAGGGTC 176887 || || ||||||||||| | ||||| ||||| || ||||| ||| | ||||| |||| Sbjct 11155 AGTGGAAACACACCGTAATAGTCACGTCCAACAACGGAGAGTCCACTGATTGCGAAGGTC 11096 Query 176888 TTCGCGGAATCACCCTCCGTCACGATGAGCGTACACTTTCCAGATTGTGCCGTCCCCGCC 176947 || || || || ||||| |||| |||||||| || ||| | | || || || || Sbjct 11095 TTGGCTGATTCGCCCTCAGTCAAAATGAGCGTGCAGTTTTGACCCTTCGCTGTACCAGCG 11036 Query 176948 TTGTTCGCATCGTCCAACTTGGGAATACCAGTAATTTTGGACTT 176991 | |||||||||||| | ||| ||||| || || | || ||||| Sbjct 11035 TAGTTCGCATCGTCGAGCTTCGGAATTCCGGTGAGCTTCGACTT 10992 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 613438241790720