Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pythium_20insidiosum_20[genbank_20GCA_5F000764265.1_202014-10-06] 8,992 sequences; 45,609,708 total letters Query= NC_013668.3 Length=248526 Score E Sequences producing significant alignments: (Bits) Value seq3132 239 7e-58 seq4347 143 4e-29 >seq3132 Length=41768 Score = 239 bits (264), Expect = 7e-58 Identities = 532/782 (68%), Gaps = 25/782 (3%) Strand=Plus/Minus Query 203836 CGTCTTGTCCACCGTGAACTGAATGGCGTTCACGGCA---GGCCTGCTTCTCAGATAGTA 203892 || |||||| |||||||||||||| |||| |||| || | | | ||| ||||| Sbjct 33486 CGCCTTGTCGACCGTGAACTGAATCGCGT---CGGCCTTCGGTCGCGTGCGCAGGTAGTA 33430 Query 203893 CATGCCGGTCTTTAGGCCCTTCTGCCACCCGTACATGTGCATGGAAGACAGTTTGCTCAC 203952 |||||| ||||| || ||||||| |||| |||| | ||||||||| | ||| ||||| | Sbjct 33429 CATGCCCGTCTTGAGACCCTTCTTCCACGCGTAGAAGTGCATGGACGTCAGCTTGCTGAT 33370 Query 203953 GTTGGGGTCGGCCATGTGAATGTTCAGAGACTGGCTTTGGTCGATGAAAGGCGCC-CGAT 204011 | || || || ||||| | ||| || |||||||| ||| |||| | |||||| || | Sbjct 33369 CGTCGGCTCCGCGATGTGCACGTTGAGCGACTGGCTCTGGCAGATGTA-GGCGCCGCGGT 33311 Query 204012 CTGCGGCCATATTGATAATGGTCTTCTGCGAAATCTCCCACACCGTCTTGAACACGTC-- 204069 | |||||||| | || | || ||||||| ||||||||||| |||||| || || Sbjct 33310 CGGCGGCCATGTCGAGCACGGCCTTCTGCTTGATCTCCCACACGGTCTTGTACTTCTCCT 33251 Query 204070 TCTGGTGTGTTGAGGCACATCTTCCCACGTCCTG-ATCGAGCCGTTGTCGGCCATCAGTC 204128 || | | || || || | ||||| ||| | |||||||| |||| | | || Sbjct 33250 TCACG-GCGTCCGGGATCA--CGCGCACGTTCTGCACCGAGCCGTGGTCGTGGAGGA-TC 33195 Query 204129 T-CATCCTCGTCTCCTCCCCCCACATGCCCAACCTGATCAGCTCCCGCACCAGGTGGGGG 204187 | | | | ||| | ||| ||||| | | ||| |||||| || |||| | Sbjct 33194 TGGTTGCGCACCTCGGGCGTCCAGATGCCGAGCTCGATGAGCTCCTTCATGAGGTACTTG 33135 Query 204188 TTGATGATCTGAAAGTCTCCGGACAGCACCCCTCGGGTGAACAGGTTGTTGGTGAATGGT 204247 || | |||| || || || | ||||| | ||| || ||| |||| | ||||| || Sbjct 33134 TTCACGATCGTGAACTCGCCAGCGAGCACGCGGCGGTTGTACATGTTGGTCGTGAACGGC 33075 Query 204248 TCGAACGCCTCGTTGTTGCCGAAAATCTGAGCGGTGCTGGCCGTGGGCATGGGAGCCAGG 204307 |||| || |||||||||||||| ||||| ||||| ||||| ||||| || || || Sbjct 33074 TCGATCGACTCGTTGTTGCCGAGGATCTGCGCGGTCGACGCCGTCGGCATCGGCGCGAGC 33015 Query 204308 AGCAGGGAGTTGCGCACACCGTATTTTTGGACCCTGCGCTTCAGAGAGGTCCAGTC---G 204364 ||||| ||||||||||| ||||| | ||| || ||| || | || |||||| | Sbjct 33014 AGCAGCGAGTTGCGCACGCCGTACTGCGCGACGCTCGCCTTGAGCGCGGCCCAGTCCCAG 32955 Query 204365 TGCATCGCACTGGGTTTCACGCCCCACATGTCGAACTGAAAGATGCCTTGACTGACTGGG 204424 | || | || | |||||||||||||||||||| |||||||| | || || || Sbjct 32954 AGACCCGACGTCGGCGTGACGCCCCACATGTCGAACTGGAAGATGCCCTTGCTCACGGGC 32895 Query 204425 CTGCCCTTGTACGTCGGATAAGGCTGATCCTCTTCTGCCAGCTTGCACGAGGCGGCCATG 204484 |||| ||| | || || | ||| ||| |||| |||||| |||| Sbjct 32894 GAACCCTCGTAGCTGCCGTACGGGCCGTGCTCCCGTGCGAGCTCCATCGAGGCCTCCATA 32835 Query 204485 GCGTGATAGTACATGGTCTCAAAGATCTGAACGTTTAATCTGGC-GGCCTC--CGTTCCG 204541 ||| | |||||| ||||| ||||| | | || | || || |||||| || || Sbjct 32834 GCGCCAAAGTACAGCGTCTCGAAGATGTTCTTG-TTGAGCTCGCGGGCCTCGTCGCTC-- 32778 Query 204542 TCAAACGCCAGACCCAGCATGGCAAACACGTCCGCCAAGCCCTGCACTCCGATTCCCAAC 204601 || ||||| |||| | | ||| ||||||| | |||||||| ||||| || | | Sbjct 32777 TCGAACGCGTAGCCCATGAGGATGAACGCGTCCGCGAGACCCTGCACGCCGATGCCGATC 32718 Query 204602 GG 204603 || Sbjct 32717 GG 32716 Score = 145 bits (160), Expect = 1e-29 Identities = 450/676 (67%), Gaps = 24/676 (4%) Strand=Plus/Minus Query 204931 CTGCTGGTTAGACTTGCGGTTACAGGAGTCCTTGTACATCATGAACGGCATTCCGTTCTC 204990 ||||||||| ||||||||||| || ||||||||||||| |||| ||||| | || |||| Sbjct 32472 CTGCTGGTTCGACTTGCGGTTGCACGAGTCCTTGTACAGCATGTACGGCGTGCCCGTCTC 32413 Query 204991 CATCTGAGA-TCGCAGAATGTGGGTCCACAATT----CGCGAGCCTCCACTTGCTTCACG 205045 ||||| || ||| || || | ||| | | |||| | || ||||| || Sbjct 32412 GATCTGCGACTCG-AGGATCGCGAACCAGAGCTGCTGCGCGCGGATCGTCTTGCG---CG 32357 Query 205046 TACATCCCTTGAGACTCGTATTTTGTGTACAGCGCCACAAAGTCAGAACCGTACA-CGTC 205104 | |||| | | |||||| | |||||||||| | || || || || ||| Sbjct 32356 CGCGGCCCTCGCG-CTCGTACTGGTGGTACAGCGCCTCGAACTCGTCGCCCCACGTCGTG 32298 Query 205105 CATCAGCCCTGGACATTTTTTGGGACACATCAGAGACCACATCTGATCGTCTTTCACCCT 205164 | ||||| || | || || || | ||| |||| | | | | || | Sbjct 32297 TAG-AGCCCCGGCGCCTCGTTCGGGCAGAACAGGCTCCACTCGCCGTTGGCCTCGACGCG 32239 Query 205165 CTCCATAAACAGGTCGCTGATCCACAGGCCGTAAAACAGATCACGGGCCCTAATTCCG-T 205223 || ||| || || ||| |||||||| |||| || |||||||| || | | | | | Sbjct 32238 CTTCATGAAGAGATCGGGGATCCACATCGCGTAGAAGAGATCACGCGCGCGG-TGCAGCT 32180 Query 205224 CGTCTCCAAGGTTCTTTTTCAAGTCCAGCCAAGCCGCA-ATGTCGGCGTGCCACGGCTCT 205282 ||| || ||||||| || | |||||| || || | |||||||||||||||||||| Sbjct 32179 CGTTGCCGTGGTTCTTCTTGAGGTCCAGG-AACTCGAAGATGTCGGCGTGCCACGGCTCC 32121 Query 205283 AACCACACGGCCATTGCGCCTGGCCTCTTGTTCCCACCCTGGTCCACCATGCGAGTCATC 205342 | ||| || | | ||| | |||| || |||||||| || ||| | | | Sbjct 32120 AGGTACATCGCGAACGAGCCCTTGCGCTTGCCGCCGCCCTGGTCGACGTAGCGCGCCGTG 32061 Query 205343 GCGTTGAAAACTCGCAGCATCGGCACCAGACCGTTGGCGGTCCCGTTCGTGCTGTTGATG 205402 ||||||| || |||||||| ||||| || ||||| | | |||||||||| | |||| Sbjct 32060 TCGTTGAAGACGCGCAGCATGGGCACGAGGCCGTTCGACGAGCCGTTCGTGCCGCGGATG 32001 Query 205403 GCCGAG-CCTTCAGCCCTCACGTTGGAGATGGCCGCGCCAATCCCGCCAGAACACTTGGC 205461 |||| | || || | | |||| | | |||| || ||||||| ||||||| Sbjct 32000 TACGAGTTCGTC-GCGCGGATGTTGTGCACGCTGACGCCGATGCCGCCAGCCCACTTGGA 31942 Query 205462 GATCTGGGCGCACT-CTTGCAGAGTGCTGTAGATGCCTGCGATGGAATCGTCCGCCAGTG 205520 ||| ||||||| |||| || ||| ||||||||| |||| || |||||| || | Sbjct 31941 GATGCACGCGCACTGCTTG-AGCGTGTCGTAGATGCCCTCGATCGAGTCGTCCTTCATGG 31883 Query 205521 TCACCAGATAGCACGAAGCCAGCT--TGGCAAAGTTGGTGCCCGCGTGGAAGAGCGTGGG 205578 | ||| ||||||| | ||||| ||| | |||||||||| ||| ||||| || Sbjct 31882 CGAGCAGGAAGCACGACGACAGCTGCGGGCGCGG--CGTGCCCGCGTTGAACAGCGTCGG 31825 Query 205579 GCTGGCGTGGCTGAAG 205594 | ||||| ||||| Sbjct 31824 CGTCGCGTGCGTGAAG 31809 >seq4347 Length=93765 Score = 143 bits (158), Expect = 4e-29 Identities = 321/472 (68%), Gaps = 14/472 (3%) Strand=Plus/Plus Query 159915 ACAGGAGGCACGCAAAGTCGCAGTGCAGTCCCTCGTCCCGAGAGATGAACTCGTTGGACA 159974 |||| ||||| || ||||||||||| || ||||| || || ||||||| |||||| || | Sbjct 72713 ACAGCAGGCAAGCGAAGTCGCAGTGGAGGCCCTCATCGCGCGAGATGAGCTCGTTCGAGA 72772 Query 159975 TGATGAGGCCCGGCATGATCCCACGCGGTTTGAGCCAAAAAATGGCCGCAAAAGCACCGC 160034 | ||||||| ||||||| |||||| |||||||| || |||| ||| || | | | Sbjct 72773 AGCTGAGGCCAGGCATGAGACCACGCTTCTTGAGCCAGAAGATGG-AGCAGAACGAGCCC 72831 Query 160035 TA-AAAAAGATCCCCTCCACGGCCGCAAACGCCACGAGCCTCTCACCAAAAGAGGCGTTG 160093 | || || || ||||| ||||| || ||||| || | | |||| |||||| || Sbjct 72832 GAGAAGAAAATGCCCTCAACGGCAGCGAACGCGACAATGCGCTCAGCAAAAGCCGC---- 72887 Query 160094 GTGTCATGGGTC-CACCTTTTG---GCCCATTCAGCCTTCTT-TGCGATGCACGGCATGC 160148 | | | | ||| |||| ||| ||||| | |||||||| ||| | ||| || ||| Sbjct 72888 GCGGCGCGAGTCGCACCACTTGAGCGCCCAGTGCGCCTTCTTCTGC-ACGCATGGAATGG 72946 Query 160149 GCTCGACGGCGTTAAACAATCTGTCCTGCTCCTTCACATCCTTGATCAGAGTAGCAATCA 160208 ||||| |||| | | || || |||| || |||||||| || |||| | Sbjct 72947 TCTCGATGGCGCGGAGGAGGTGGTTCTTCTCCGTCTGGTCCTTGATGTACGTGTCAATGA 73006 Query 160209 GCTTCGAGTACATTTCTGCGTGCACATTTTCGATGGCCATCTGAAAGTTGTAGAAATATG 160268 || |||||||| || | ||| | || || ||||| ||||| ||| ||||| | Sbjct 73007 GCAGCGAGTACACCTCCGAGTGGATGTTCTCAATGGCGATCTGGAAGCCATAGAAGCAAC 73066 Query 160269 TCGCCTCCAGATACTGCACCTC-CTGTGTGAACCTTTGACCCAGATTGGCATTAACCAAC 160327 |||||| || ||||||||| ||| |||| | | || || | || || | Sbjct 73067 GCGCCTCAGGAACCTGCACCTCGCTG-CTGAAGTTCATCGCGAGGTTCTCGTTGACGATA 73125 Query 160328 CCGTCGGCGGCCGCAAAGAAAGCCAACACGTGAGAGATGAAATGTCTCTCGT 160379 |||||| ||||| ||||| || | ||||| ||| || || | ||||| Sbjct 73126 CCGTCGCTCGCCGCGAAGAACGCGAGGACGTGCTTGATAAAGTGGCGCTCGT 73177 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 795065824555520