Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pythium_20insidiosum_20[genbank_20GCA_5F000764265.1_202014-10-06] 8,992 sequences; 45,609,708 total letters Query= NC_013953.1 Length=156344 Score E Sequences producing significant alignments: (Bits) Value seq4347 242 4e-59 seq1220 140 3e-28 seq2702 134 1e-26 seq7397 87.8 2e-12 >seq4347 Length=93765 Score = 242 bits (268), Expect = 4e-59 Identities = 442/635 (70%), Gaps = 13/635 (2%) Strand=Plus/Plus Query 132887 ACATCAAGCAAGCAAAGTCGCAATGCAAGCCCTCGTCCCTGGAAATGAGTTCGTTGCTGA 132946 ||| || |||||| |||||||| || | |||||| || | || ||||| ||||| || Sbjct 72713 ACAGCAGGCAAGCGAAGTCGCAGTGGAGGCCCTCATCGCGCGAGATGAGCTCGTTCGAGA 72772 Query 132947 AAGTCAAGCCGGGCATGAGGCCGCGTTTTTTGAGCCAAAATATGGCGGCGAAACTGCCCG 133006 | | | ||| |||||||| || || || |||||||| || |||| | ||| ||||| Sbjct 72773 AGCTGAGGCCAGGCATGAGACCACGCTTCTTGAGCCAGAAGATGGAGCAGAACGAGCCCG 72832 Query 133007 AAAAGAAGACGCCCTCGACGGCCGCGAAAGCCACCAGGCGCTCGCCGAACGTGGCTTCTT 133066 | ||||| | |||||| ||||| ||||| || || | |||||| | || | || | Sbjct 72833 AGAAGAAAATGCCCTCAACGGCAGCGAACGCGACAATGCGCTCAGCAAAAGCCGCG-CGG 72891 Query 133067 TGCTGG-CGATCCAGCGCAGCGCCCATTCGGCCTTTTCTTTGACGCACGGCATCGTTTCG 133125 || | || ||| |||||||| | ||||| | | ||||| || || || ||| Sbjct 72892 CGCGAGTCGCACCACTTGAGCGCCCAGTGCGCCTTCTTCTGCACGCATGGAATGGTCTCG 72951 Query 133126 ATGGCGTTCAACAAACGGAGTTTCTCTTCCGA--GGAACGC-ACGTAGGTGTCGATGAGG 133182 |||||| | | || | |||| |||| || | | ||| ||||| ||||| Sbjct 72952 ATGGCGCGGAGGA---GGTGGTTCTTCTCCGTCTGGTCCTTGATGTACGTGTCAATGAGC 73008 Query 133183 GTCGAATACATTTCCGAGTGTACGTTCTCCATGGCGATTTGAAAGCCGTAAAAGCACCGC 133242 ||| |||| |||||||| | |||||| |||||||| || ||||| || ||||| ||| Sbjct 73009 AGCGAGTACACCTCCGAGTGGATGTTCTCAATGGCGATCTGGAAGCCATAGAAGCAACGC 73068 Query 133243 GCCTCGACCACCTGCACTTCTTGAGCGAAACGC-TCGACCAGATTTTCGTTGACGATGCC 133301 ||||| |||||||| || ||| | ||| | || || ||||||||||| || Sbjct 73069 GCCTCAGGAACCTGCACCTCGCTGCTGAAGTTCATCG-CGAGGTTCTCGTTGACGATACC 73127 Query 133302 GTCGCTGGCGGCGAAAAAGGCCAGCACGTGCTTGATGAAATGGCGCTCGTTGTCGTTCAA 133361 |||||| || ||||| || || || ||||||||||| || |||||||||||||| | | Sbjct 73128 GTCGCTCGCCGCGAAGAACGCGAGGACGTGCTTGATAAAGTGGCGCTCGTTGTCCGTGAG 73187 Query 133362 GCGCTCCCAGTCGCGCGTGTCCTTGGAC-AGGTCCACCTCCTCGACGGTCCAAAACGACG 133420 | ||||||| | | | | || || || || | ||||||| ||||||| || || Sbjct 73188 GTTGCCCCAGTC-CTTGAGGTCGTGCACGAGATCGATCTCCTCGGCGGTCCAGAAGCTCG 73246 Query 133421 CCTCGGCTTTTTTGTACATACTCCACATGTCCGAATATTGTATGGGAAAAATCACAAACC 133480 ||||||| || |||||||| ||||| || | || || || |||| ||| || | Sbjct 73247 CCTCGGCCTTCTTGTACATCTGCCACACCTCGTTCTCCTGGATCGGGAAAAGCACGAAAC 73306 Query 133481 GGCGGGGGTTTTCGCGCAACAGCGGCTCC-GCTTG 133514 || ||||| ||| | | ||||||| ||||| Sbjct 73307 GGTTCGGGTTCTCGATGAGGAACGGCTCCGGCTTG 73341 >seq1220 Length=9499 Score = 140 bits (154), Expect = 3e-28 Identities = 170/229 (74%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || ||||| || ||||| |||||||| || ||||| ||||||| ||| | | Sbjct 34 ATGCAGATCTTCGTGAAGACGCTGACGGGCAAGACGATCACGCTCGACGTGGAGCCGTCG 93 Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 ||| | | |||| | || | || || | ||||| ||||| ||||| | ||||| Sbjct 94 GACTCGATCGACAACG-TCAAGCAGAAGATTCAGGACAAGGAGGGCATTCCGCCGGACCA 152 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 ||||| || || | ||| ||||| |||||||| |||| ||||| || |||||||| Sbjct 153 GCAGCGCCTGATCTTCGCTGGCAAGCAGCTGGAGGACGGCCGCACGCTGTCGGACTACAA 212 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGGC 38471 |||||| ||||| |||||||||| ||||||||||| || | || ||| Sbjct 213 CATCCAGAAGGAGTCGACGCTGCACCTGGTGCTGCGTCTGCGTGGTGGC 261 >seq2702 Length=56295 Score = 134 bits (148), Expect = 1e-26 Identities = 161/219 (74%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 38240 AAAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGC 38299 ||| ||||| || ||||| || || || || ||||| || ||||| ||||||||||| | Sbjct 26761 AAAGATGCAGATCTTCGTCAAGACTCTGACCGGCAAGACGATCACGCTCGACGTCGAGCC 26820 Query 38300 CACCGACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGA 38359 | |||||| | | | | || | || |||| ||||| |||||||| || | || Sbjct 26821 TTCGGACAGCATTGACAATGTCAAGCAGAAGATCCAGGACAAGGAGGGAATCCCTCCGGA 26880 Query 38360 CCAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTA 38419 || ||||| || || | ||| ||||| ||||| || |||| ||||| ||| ||||| Sbjct 26881 TCAGCAGCGCCTGATCTTCGCCGGCAAGCAGCTCGAGGACGGCCGCACGCTCTCGGACTA 26940 Query 38420 CAACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCG 38458 ||||||||| ||||| ||||||| || ||||||| || Sbjct 26941 CAACATCCAGAAGGAGTCGACGCTCCACCTGGTGCTCCG 26979 >seq7397 Length=9624 Score = 87.8 bits (96), Expect = 2e-12 Identities = 87/113 (77%), Gaps = 0/113 (0%) Strand=Plus/Minus Query 38346 GGAATTCCCGCCGACCAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGC 38405 ||||| || | || || ||||| || || | ||| ||||| ||||| || |||| ||| Sbjct 4317 GGAATCCCTCCGGATCAGCAGCGCCTGATCTTCGCCGGCAAGCAGCTCGAGGACGGCCGC 4258 Query 38406 ACCCTCAACGACTACAACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCG 38458 ||||| |||||||||||||| ||||| |||||||||| ||||||| || Sbjct 4257 ACCCTTTCGGACTACAACATCCAGAAGGAGTCGACGCTGCACCTGGTGCTCCG 4205 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 500116580577280