Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pythium_20insidiosum_20[genbank_20GCA_5F000764265.1_202014-10-06] 8,992 sequences; 45,609,708 total letters Query= NC_014767.1 Length=184095 Score E Sequences producing significant alignments: (Bits) Value seq2053 159 4e-34 seq3132 132 6e-26 seq4347 116 4e-21 seq7148 104 3e-17 >seq2053 Length=27294 Score = 159 bits (176), Expect = 4e-34 Identities = 292/422 (69%), Gaps = 17/422 (4%) Strand=Plus/Minus Query 11496 AATCTTACGATCGAAACGACCTGGGCGGAGTAGAGCATCATCAAGAATATCGACACGGTT 11555 ||||| ||||||||| ||||| || || || | || | || ||||| ||||||||||| Sbjct 13751 AATCTGACGATCGAAGCGACCGGGACGAAGAATGGCCTTGTCGAGAATGTCGACACGGTT 13692 Query 11556 TGTAGCGGCAATGACTACAATGCCAGTCTCATT---GTCGAAACCGTCCATTTCTGTGAG 11612 ||| |||||| || || | ||| |||| | || ||| |||||||| || ||| Sbjct 13691 CGTACCGGCAAGCACAACCACGCC---CTCACTCGAGTTGAAGCCGTCCATCTCCACGAG 13635 Query 11613 AAGCTGGTTGATCGTCTGTTCACGCTCATCGTT------GGAGGGCATACCACCTGCCGA 11666 | |||||||| ||| | || ||||| ||||| |||| | | || | ||| Sbjct 13634 CAACTGGTTGAGCGTGTTCTCTCGCTCGTCGTTACCACCGGAGAACGTTCC-CTTGCT-- 13578 Query 11667 ACGCTTCTTACCGACAGCGTCAATCTCATCGATGAATACGATACACGGTTGGTTGGCACG 11726 ||| | ||||||| || || ||||||||||| || || || || ||||||||| Sbjct 13577 ACGTGCACGAGCGACAGCATCGATTTCATCGATGAAGACAATGCAGGGAGAGTTGGCACG 13518 Query 11727 TGCCTGTTCGAAAAGTTCACGTACACGCTTCGCTCCAACACCTACGAACATCTCAACGAA 11786 |||| ||| || ||||| |||||| || || ||||| || |||||||| | ||| Sbjct 13517 AGCCTCACGGAACAGATCACGCACACGCGACGGACCGACACCGACAAACATCTCGATGAA 13458 Query 11787 GTTTGCGGCAG-AACACTGAATGAAGGGAACATTAGACTCACCAGCGATGGCTCGAGCGA 11845 | | | | | || ||||| ||| || || ||| ||||| || | || |||| Sbjct 13457 ATCCGAGCCCGAAATGCTGAA-GAACGGCACGCTAGCTTCACCGGCCGTCGCCTTCGCGA 13399 Query 11846 GGAGAGTCTTACCCGTACCAGGTGCACCAGCGAGAAGGGCGCCACGGGGGATCTTGGCAC 11905 | || |||||||| ||||| || | ||| | || || || || ||||||||||||| Sbjct 13398 GCAGCGTCTTACCAGTACCGGGGGGTCCAACTAGCAGCGCACCCTTCGGGATCTTGGCAC 13339 Query 11906 CA 11907 || Sbjct 13338 CA 13337 >seq3132 Length=41768 Score = 132 bits (146), Expect = 6e-26 Identities = 460/708 (65%), Gaps = 15/708 (2%) Strand=Plus/Minus Query 110379 GTTCTTCTGATTCGATTTGGAGTTGCATGCATCCTTATAGAGCATGTATGGGGTACCAGT 110438 ||||| ||| ||||| ||| |||||| | ||||| || |||||||| || || || || Sbjct 32475 GTTCTGCTGGTTCGACTTGCGGTTGCACGAGTCCTTGTACAGCATGTACGGCGTGCCCGT 32416 Query 110439 TTCCGTCTGTGACTTGAGAATGGCCTTCCATACAT-CGGCGGCGGGGACAGT--TGCGTT 110495 || |||| |||| ||| || || ||| | | | ||| || ||| || |||| Sbjct 32415 CTCGATCTGCGACTCGAGGATCGCGAACCAGAGCTGCTGCG-CGCGGATCGTCTTGCGC- 32358 Query 110496 AGCGAGACCTTCCTCCTCGTACTTGGTGTACAAGTCCTCAAATTCCTGTCCGTACACATC 110555 ||| | || || |||||||| | ||||| |||| || || | || ||| || Sbjct 32357 -GCGCGGCCCTCGCGCTCGTACTGGTGGTACAGCGCCTCGAACTCGTCGCCC--CACGTC 32301 Query 110556 AGAAAGA--CCCTTCGCCTTGTCGGGACAGAAGAGGGACCAATTTCCACCCTCCTCAACC 110613 ||| ||| ||||| || || ||||| ||| ||| | || |||| || Sbjct 32300 GTGTAGAGCCCCGGCGCCTCGTTCGGGCAGAACAGGCTCCACTCGCCGTTGGCCTCGACG 32241 Query 110614 CTCTTCATGAACAGGTCAGGAATCCACATCGCCGAGAAAAGGTCACG-GCAACGAGCCTC 110672 | ||||||||| || || || ||||||||||| |||| || ||||| || | || | Sbjct 32240 CGCTTCATGAAGAGATCGGGGATCCACATCGCGTAGAAGAGATCACGCGCGCGGTGCAGC 32181 Query 110673 TTCATCACCTTGGTTGAGGCGTAGCTCCAAAAAGTCCATGATATCCGAGTGCCATGGTTC 110732 || | || ||||| || |||| || || | ||| || | |||||| || || Sbjct 32180 -TCGTTGCCGTGGTTCTTCTTGAGGTCCAGGAACTCGAAGATGTCGGCGTGCCACGGCTC 32122 Query 110733 GAGATAGACAGCGATGGATCCCTTACG---ACGACCCGCCTGGTTAACATAGCGTGCTGT 110789 || || | |||| || ||||| || | || |||||| || ||||| || || Sbjct 32121 CAGGTACATCGCGAACGAGCCCTTGCGCTTGCCGCCGCCCTGGTCGACGTAGCGCGCCGT 32062 Query 110790 GGCATTGAAGACCCTGAGCATAGGAATAATTCCATCGGATTGACCATTTGTACCCCTAAT 110849 | | |||||||| | ||||| || | | || | || || || || || | || Sbjct 32061 GTCGTTGAAGACGCGCAGCATGGGCACGAGGCCGTTCGACGAGCCGTTCGTGCCGCGGAT 32002 Query 110850 TCTGGACTTATTGGCACGAATGTCGTGGATATGCATACCAATACCACCCGCCCACTTACT 110909 || || | || || |||| ||| | | || || || || |||||||| Sbjct 32001 GTACGAGTTCGTCGCGCGGATGTTGTGCACGCTGACGCCGATGCCGCCAGCCCACTTGGA 31942 Query 110910 AATTTGTGCACACTCTGTGAGTGTACCATAAATACCATCAATCGAATCTGCCTTGTTGGC 110969 || || |||| |||| || | || || || || ||||| || |||| |||| Sbjct 31941 GATGCACGCGCACTGCTTGAGCGTGTCGTAGATGCCCTCGATCGAGTCGTCCTTCATGGC 31882 Query 110970 AATTAGAAAGCAAGAAGACATCTGAGGACGAGGCGTTCCCGCATTGAAGAGTGTAGGTGT 111029 | || ||||| || |||| ||| || || ||||| ||||| ||||| || || || || Sbjct 31881 GAGCAGGAAGCACGACGACAGCTGCGGGCGCGGCGTGCCCGCGTTGAACAGCGTCGGCGT 31822 Query 111030 CGCATGAATGAACAGACCTTGGGACATCTTGTTGTATGTGTCGAGTGC 111077 ||| || |||| | | ||| ||||| | | ||| || ||||| || Sbjct 31821 CGCGTGCGTGAAGAAGCTTTGCGACATGTACTCGTACGTCTCGAGCGC 31774 >seq4347 Length=93765 Score = 116 bits (128), Expect = 4e-21 Identities = 191/275 (69%), Gaps = 9/275 (3%) Strand=Plus/Plus Query 119508 TGAAGCCCTTCATCCCGAGAGATGAGCTCATTACTGAAGCAAAGTCCAGGCATGAGTCCT 119567 || || || ||||| || ||||||||||| || ||||| || ||||||||||| || Sbjct 72736 TGGAGGCCCTCATCGCGCGAGATGAGCTCGTTCGAGAAGCTGAGGCCAGGCATGAGACCA 72795 Query 119568 CTTTTCTTTAGCCAAAAGATGGCACAAAAACTTCCAGAAAAGAAGATGCCCTCCACACAG 119627 | ||||| ||||| ||||||| || || || || ||||| |||||||| || Sbjct 72796 CGCTTCTTGAGCCAGAAGATGGAGCAGAACGAGCCCGAGAAGAAAATGCCCTCAACGGCA 72855 Query 119628 GCGAAAGCGAATAGACGCTCAGCAAAAG------GTCGAGACTTGTCGAACCACTTGAGA 119681 ||||| |||| | ||||||||||||| | || || |||| |||||||||| Sbjct 72856 GCGAACGCGACAATGCGCTCAGCAAAAGCCGCGCGGCGCGA---GTCGCACCACTTGAGC 72912 Query 119682 GCCCAGTTGGCCTTACGCTCTATGCAGGGGACAGTTTGGATGGCTTCGAAAAGTTGCTTC 119741 ||||||| ||||| || | ||| || | || | |||||| || || || ||| Sbjct 72913 GCCCAGTGCGCCTTCTTCTGCACGCATGGAATGGTCTCGATGGCGCGGAGGAGGTGGTTC 72972 Query 119742 TTTTCAGCACCATCCTTAATATATTTATCAATGAG 119776 || || | ||||| || || | |||||||| Sbjct 72973 TTCTCCGTCTGGTCCTTGATGTACGTGTCAATGAG 73007 >seq7148 Length=46129 Score = 104 bits (114), Expect = 3e-17 Identities = 274/410 (67%), Gaps = 24/410 (6%) Strand=Plus/Minus Query 168205 ATCTTAAGAAGACTCGGCCAAAAGTAATGAATCATATTGAGAATGAGACCCTTGATATGG 168264 || || |||||| |||||| |||| |||||| | ||||| | ||||||||||| || Sbjct 11389 ATTTTCAGAAGAGACGGCCAGAAGTGATGAATAAAATTGATGACCAGACCCTTGATGTGA 11330 Query 168265 CTTCCATCATTATCTGCGTCTGTCATGATCATGAGACGACCATAACGAAG----TTCGGA 168320 || || |||| ||| |||| ||||||||| || | || ||||| || |||| Sbjct 11329 CTGCCGTCATGATCCTGATCTGCCATGATCATCAGGTGCCCGTAACGTAGACTCTTCGTT 11270 Query 168321 AACATCTTTGTACTCCTTTCCTTGTTGAAGTCCCAAAATTTTCT-TGAGATCATTGAA-C 168378 || | |||| | || || | |||||||| || ||| | || || |||| | Sbjct 11269 GAC----TCATACTTGTGGCCGTGCTTGAGTCCCAAGATCTTCACTAAGTTC--TGAATC 11216 Query 168379 TCCTGATTAGATGTCA-ACTGTGCCACCGATGAGTCCCT-CACGTTTTTACACT----TA 168432 |||| || ||| | | || | |||| || || |||| | || | | Sbjct 11215 TCCTCGTTCT---TCATAATTTGAGA---ATGACTCGCTTCACGAACATTCAGTAGTTTG 11162 Query 168433 CCACGGAGTGGAAATACCCCATAATGATCTCTACCCACGACGGAGAGACCAGCGACAGCG 168492 || |||||||| || || |||| || | || || |||||||| ||| || ||| Sbjct 11161 CCCTTCAGTGGAAACACACCGTAATAGTCACGTCCAACAACGGAGAGTCCACTGATTGCG 11102 Query 168493 AGAGTTTTCGCTGAATCACCCTCTGTCACGATGAGTGTACACTTTCCAGACTGTGCCGTA 168552 | || || ||||| || ||||| |||| ||||| || || ||| | || || ||| Sbjct 11101 AAGGTCTTGGCTGATTCGCCCTCAGTCAAAATGAGCGTGCAGTTTTGACCCTTCGCTGTA 11042 Query 168553 CCAGCTTTGTTCGCATCGTCCAATTTGGGGATACCAGTGATCTTAGACTT 168602 ||||| | |||||||||||| | || || || || |||| ||| ||||| Sbjct 11041 CCAGCGTAGTTCGCATCGTCGAGCTTCGGAATTCCGGTGAGCTTCGACTT 10992 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 588909799097600