Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pythium_20insidiosum_20[genbank_20GCA_5F000764265.1_202014-10-06] 8,992 sequences; 45,609,708 total letters Query= NC_014789.1 Length=184409 Score E Sequences producing significant alignments: (Bits) Value seq3132 224 1e-53 seq4347 143 3e-29 seq7148 91.5 2e-13 >seq3132 Length=41768 Score = 224 bits (248), Expect = 1e-53 Identities = 576/861 (67%), Gaps = 17/861 (2%) Strand=Plus/Minus Query 106544 ATCGTCCCCAAATTCTTTTGGTTACTCTTTTTGTTGCACGCATCCTTGTAGAGCATGTAG 106603 ||||| || | |||| ||||| ||| |||||||| |||||||| |||||||| Sbjct 32486 ATCGTGCCGAGGTTCTGCTGGTTCGACTTGCGGTTGCACGAGTCCTTGTACAGCATGTAC 32427 Query 106604 GGCGTCCCCGTCTCCGTCTGTGACTTGAGAATTGCCTTCCACACAT-CGGCG-GCTGGTA 106661 ||||| |||||||| |||| |||| ||| || || ||| | | | ||| || | | Sbjct 32426 GGCGTGCCCGTCTCGATCTGCGACTCGAGGATCGCGAACCAGAGCTGCTGCGCGCGGATC 32367 Query 106662 CAATGGCGTTGGCCCGTCCCTCCGCCTCGTACTTTGTGTAGAGGGCTTCAAACTCCTCAC 106721 | ||| || || ||||| |||||||| ||| || || || ||||| || | Sbjct 32366 GTCTTGCGC--GCGCGGCCCTCGCGCTCGTACTGGTGGTACAGCGCCTCGAACTCGTCGC 32309 Query 106722 CCACCG-CGTCGGAGAGACCTGGTGCCTTGTCTGGACAGAAAAGAGACCATTGACCACCC 106780 || || ||| | |||| || || |||| || || ||||| || ||| | || Sbjct 32308 CCCACGTCGT-GTAGAGCCCCGGCGCCTCGTTCGGGCAGAACAGGCTCCACTCGCCGTTG 32250 Query 106781 TCCTCAACCCGCTTCATGAAAAGGTCTGGAATCCACAGGGATGAAAAGAGATCTCTA-CA 106839 |||| || ||||||||||| || || || ||||||| | | |||||||| | | Sbjct 32249 GCCTCGACGCGCTTCATGAAGAGATCGGGGATCCACATCGCGTAGAAGAGATCACGCGCG 32190 Query 106840 CCGAGCCTCTTCGTCACCTTGGTTGAGTCGTAAC-TCAAGGAACTCCATGATATCCGCGT 106898 | | || || ||| || ||||| || | | || |||||||| | ||| || |||| Sbjct 32189 CGGTGCAGCT-CGTTGCCGTGGTTCT-TCTTGAGGTCCAGGAACTCGAAGATGTCGGCGT 32132 Query 106899 GCCATGGCTCAAGATAGACTGCGATAGATCCCTTTCGAC-GCC--CAGCTTGATTTACAT 106955 |||| ||||| || || | |||| || ||||| || ||| | | || | || | Sbjct 32131 GCCACGGCTCCAGGTACATCGCGAACGAGCCCTTGCGCTTGCCGCCGCCCTGGTCGACGT 32072 Query 106956 AGCGCGCTGTGGCGTTAAATACGCGAAGCATTGGAATAATACCATCTGATTGACCATTTG 107015 ||||||| ||| |||| || ||||| ||||| || | | || | || || || | Sbjct 32071 AGCGCGCCGTGTCGTTGAAGACGCGCAGCATGGGCACGAGGCCGTTCGACGAGCCGTTCG 32012 Query 107016 TCCCCCGAAT--ACGAGATTTATTGGCTCTCACATCATGGATGTGCATCCCAATACCCCC 107073 | || || || ||||| || | || | | | || | | | || || || || Sbjct 32011 TGCCGCGGATGTACGAG--TTCGTCGCGCGGATGTTGTGCACGCTGACGCCGATGCCGCC 31954 Query 107074 AGCCCACTTTGAGATTTGCGCACACTCCGTAAGAGTTCCATAGATACCGTTGATTGAGTC 107133 ||||||||| ||||| ||| |||| | | || || | ||||| || | ||| ||||| Sbjct 31953 AGCCCACTTGGAGATGCACGCGCACTGCTTGAGCGTGTCGTAGATGCCCTCGATCGAGTC 31894 Query 107134 CTCCTTGTTGGCGATAAGGAAGCAACTGGACATCTGCGGTCTTGGTGTACCAGCATTGAA 107193 ||||| |||||| |||||||| |||| |||||| | || || || || ||||| Sbjct 31893 GTCCTTCATGGCGAGCAGGAAGCACGACGACAGCTGCGGGCGCGGCGTGCCCGCGTTGAA 31834 Query 107194 GAGGGTTGGTGTTGCGTGAATGAACATACCTTGGGACATCTTGTCGTATGTCTCCAAGAC 107253 || || || || ||||| |||| | | ||| ||||| | ||||| ||||| | | Sbjct 31833 CAGCGTCGGCGTCGCGTGCGTGAAGAAGCTTTGCGACATGTACTCGTACGTCTCGAGCGC 31774 Query 107254 AGAATCAATGTCTTCCCCGTGGATGCCGATGGCCACACGCATAAACATGTATTGGGGTGT 107313 || |||||||| | | ||||||||||| ||| ||||||| || ||| | || || Sbjct 31773 AGCGTCAATGTCGTGCTTGTGGATGCCGACGGCGACACGCAGAATCATCTGCTGCGGACG 31714 Query 107314 TTCCATGAGGATGCCATCGAGCCGTTGAAGATAGCTCTTCTCAAGGGTTTTGAGACCAAA 107373 ||| || |||| ||| || | ||||| |||||| || || |||| ||||| Sbjct 31713 CTCCGCGACCTTGCCGCCGACGCGGAGGAGATACGACTTCTCGAGCGTCTTGAAGCCAAA 31654 Query 107374 GTAACCAAAATCATAGTCCCG 107394 ||| | | ||| |||| || Sbjct 31653 GTAGTCGTACTCAAAGTCGCG 31633 >seq4347 Length=93765 Score = 143 bits (158), Expect = 3e-29 Identities = 386/579 (67%), Gaps = 20/579 (3%) Strand=Plus/Plus Query 116986 TAGTCCCCAACTCGCTTCTCAAAGAAGTTGGTCTTCCCATCAAGGCTAATGTTTTCCATA 117045 || || ||||| |||||||| |||||||||||||| || | || || | ||||| Sbjct 72436 TACTCGCCAACGCGCTTCTCGAAGAAGTTGGTCTTGCCCTGGAGCGAGATCATGTCCATC 72495 Query 117046 AAGTCAAATGGATTCTTCGCGTTCCAAATGGGTGGC-ACCCCAACTTGTTTGAGGAGACG 117104 ||||||| || ||| | | || |||| |||| || |||| | |||||| || Sbjct 72496 CAGTCAAACGGGTTCGACACCTTGTAAATCT-TGGCGACACCAAGCGCGTGGAGGAGGCG 72554 Query 117105 ATCCGA-CACATACTCAATGTACTCGGACATCTTCTCAGAGTTCATACCGATGAGATTAC 117163 ||| | || | |||| ||||||| | |||| | |||||||| ||||| || | Sbjct 72555 ATCGGCGCAGA-ACTCGATGTACTGGCACATGAGCGACGAGTTCATGCCGATCAGCTCGA 72613 Query 117164 ATGGGAGTGCGTCCAAGATGAACCCTTTCTCAATCTCAACCGCCTCTTTCACGATGGCGT 117223 || || | |||| || |||| | ||||||||| | || || || | ||| | | Sbjct 72614 CCGGAAGCGAGTCCTGGACGAACTCCTTCTCAATCGCGACGGCATCGCGAATGATCTCAT 72673 Query 117224 GGATAGT----TTCGGTAGTGGGTCTATTACGCAAAGTCTTGAAGAGCTCCACG---GCA 117276 |||| | ||| || || | || ||| |||| || | || | || Sbjct 72674 GGATGCGCGACTCCGGGAGCTTGT---TGAC---AAG-CTTGGAGTACAGCAGGCAAGCG 72726 Query 117277 AACTCCTGGTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGGCCTGGC 117336 || || |||||| |||||||| || || || || || || ||||||| ||||| ||| Sbjct 72727 AAGTCGCAGTGGAGGCCCTCATCGCGCGAGATGAGCTCGTTCGAGAAGCTGAGGCCAGGC 72786 Query 117337 ATGAGACCCCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATACCC 117396 |||||||| |||||||| | ||| | || | |||||| || || |||||||| || ||| Sbjct 72787 ATGAGACCACGCTTCTTGAGCCAGAAGATGGAGCAGAACGAGCCCGAGAAGAAAATGCCC 72846 Query 117397 TCCACACACGCAAACGCAAAAAGGCGCTCGGC-GAAGGAGCGAGACTTTGTGTCAAACCA 117455 || || || ||||| | || |||||| || ||| ||| | | | ||| |||| Sbjct 72847 TCAACGGCAGCGAACGCGACAATGCGCTCAGCAAAAGCCGCGCGGC-GCGAGTCGCACCA 72905 Query 117456 TTTCATTGCCCATTTCGCCTTCTTCTCAATACATGGTACAGTTTGGATGGCTTCAAATAA 117515 || | ||||| | ||||||||||| | ||||| | || | |||||| | | Sbjct 72906 CTTGAGCGCCCAGTGCGCCTTCTTCTGCACGCATGGAATGGTCTCGATGGCGCGGAGGAG 72965 Query 117516 CTGCTTCTTTTCAGATCCATCCTTAATGTATTTGTCAAT 117554 || ||||| || | ||||| ||||| ||||||| Sbjct 72966 GTGGTTCTTCTCCGTCTGGTCCTTGATGTACGTGTCAAT 73004 >seq7148 Length=46129 Score = 91.5 bits (100), Expect = 2e-13 Identities = 269/410 (66%), Gaps = 30/410 (7%) Strand=Plus/Minus Query 169140 TTGAGAAGACTGGGCCAGAAGTAGTGGATCATATTTAGGATGAGACCCTTGATGTGAGAA 169199 || |||||| |||||||||| || || | ||| | || ||||||||||||||| Sbjct 11386 TTCAGAAGAGACGGCCAGAAGTGATGAATAAAATTGATGACCAGACCCTTGATGTGACTG 11327 Query 169200 CCATCATTATCGGCATCTGTCATAATCATAAGACGACCATAGCGAAGTTCAGAAACATCT 169259 || |||| ||| ||||| ||| ||||| || | || || || || || ||| Sbjct 11326 CCGTCATGATCCTGATCTGCCATGATCATCAGGTGCCCGTAACGTAG-------AC-TCT 11275 Query 169260 TGGTAGTCTTTTCCTTGTTGA--------AGACCCAAGATCTTCT-TGAGATCGTTGAA- 169309 | || | || | ||||| | || |||||||||||| | || || |||| Sbjct 11274 TCGTTGACTCATACTTGTGGCCGTGCTTGAGTCCCAAGATCTTCACTAAGTTC--TGAAT 11217 Query 169310 CTCTTGGTT-----TGATGTGAGCTGTGCCACTGAAGCGTCGCGGACATTCTTACACTTC 169364 ||| | ||| | || |||| || | | || || || |||||| || Sbjct 11216 CTCCTCGTTCTTCATAATTTGAGAA-TGACTC----GCTTCACGAACATTCAGTAGTTTG 11162 Query 169365 CCACGGAGAGGAAAGACGCCATAGTGATCACGTCCAACGACGGAGAGACCCGCGACCGCA 169424 || || ||||| || || || | ||||||||||| |||||||| || || || Sbjct 11161 CCCTTCAGTGGAAACACACCGTAATAGTCACGTCCAACAACGGAGAGTCCACTGATTGCG 11102 Query 169425 AGGGTTTTCGCTGAATCACCCTCCGTGACAATGAGGGTACACTTTCCAGATTGCGCCGTA 169484 | ||| || ||||| || ||||| || | |||||| || || ||| | | ||| ||| Sbjct 11101 AAGGTCTTGGCTGATTCGCCCTCAGTCAAAATGAGCGTGCAGTTTTGACCCTTCGCTGTA 11042 Query 169485 CCCGCCTTGTTTGCGTCGTCCAACTTGGGAATACCAGTAATTTTGGACTT 169534 || || | ||| || ||||| | ||| ||||| || || | || ||||| Sbjct 11041 CCAGCGTAGTTCGCATCGTCGAGCTTCGGAATTCCGGTGAGCTTCGACTT 10992 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 589914486158080