Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pythium_20insidiosum_20[genbank_20GCA_5F000764265.1_202014-10-06] 8,992 sequences; 45,609,708 total letters Query= NC_019491.1 Length=291144 Score E Sequences producing significant alignments: (Bits) Value seq3132 309 6e-79 seq4347 226 5e-54 >seq3132 Length=41768 Score = 309 bits (342), Expect = 6e-79 Identities = 1133/1746 (65%), Gaps = 80/1746 (5%) Strand=Plus/Minus Query 212586 GTGCGTAGATAGTACATGCCGGTCTTTAGGCCCTTGCCCCAGCCGTGCATGTGCATTGCT 212645 ||||| || ||||||||||| ||||| || ||||| ||| ||| | |||||| | Sbjct 33443 GTGCGCAGGTAGTACATGCCCGTCTTGAGACCCTTCTTCCACGCGTAGAAGTGCATGGAC 33384 Query 212646 GTGAGTTTCTTCAGCTTAATATTCTGGTCATCCTCGTGGCCCAGATGT--AGGTTCAGGG 212703 || |||||| ||| ||| ||| || ||||| | ||| || | Sbjct 33383 GT---------CAGCTTG-----CTG---ATCGTCGGCTCCGCGATGTGCACGTTGAGCG 33341 Query 212704 ACTGACTCTGGTCTATGAATGGGGCCCTGTCAGCGGCCATGTCTATGATATCTCTCTGGG 212763 |||| |||||| ||| | | | | | ||| ||||||||||| | | | |||| Sbjct 33340 ACTGGCTCTGGCAGATGTAGGCGCCGCGGTCGGCGGCCATGTCGAGCACGGCCTTCTGCT 33281 Query 212764 AGAGCTCCCACACGGTCTTGAAGATTTCTTTGAGGTCCTCTGGGAAGCCGGGGATGTTCT 212823 || |||||||||||||||| | | || || | | | || |||| || | | ||||| Sbjct 33280 TGATCTCCCACACGGTCTTGTACTTCTCCTTCACGGCGTCCGGGATCACGCGCACGTTCT 33221 Query 212824 GCACAGACCCCCTGTGTATGGTCAGCTGCAGGCGCATGTCCTCGT---TCCAGAGGCCCC 212880 |||| || || || | | ||| ||||| ||||| |||||| ||| Sbjct 33220 GCACCGAGCCGTGGTCGTGGAGGATCTGGTTGCGCA---CCTCGGGCGTCCAGATGCC-- 33166 Query 212881 TGGTCTCCAGGCACT---TGACCAGGTGAGGGTTGACTATCTGGAAGTCACCTGAGAGCA 212937 | ||| | | || | | |||| ||| || ||| ||| || || | ||||| Sbjct 33165 -GAGCTCGATGAGCTCCTTCATGAGGTACTTGTTCACGATCGTGAACTCGCCAGCGAGCA 33107 Query 212938 CCCTCCTCTGGTAAAAGTTTGAAGTGTAGGGCTCGATGCTCTCGTTGTTCCCCAGAATCT 212997 | | | | ||| | ||| | ||| | |||||||| ||||||||| || || |||| Sbjct 33106 CGCGGCGGTTGTACATGTTGGTCGTGAACGGCTCGATCGACTCGTTGTTGCCGAGGATCT 33047 Query 212998 GTGCAGTGCTGGCTGTGGGCATGGGAGCCACCAGGAGACTGTTCCTCACTCCGTGCTCGC 213057 | || || || || ||||| || || | ||| || ||| | ||| |||| || Sbjct 33046 GCGCGGTCGACGCCGTCGGCATCGGCGCGAGCAGCAGCGAGTTGCGCACGCCGTACTGCG 32987 Query 213058 CGATGAGGCGCCGA-AGCTCTGCCCAGTCCCATCTGCCAGACAGGTCCTCGTCCTTCACG 213116 ||| | |||| ||| | ||||||||||| || ||| ||| ||| ||| Sbjct 32986 CGACGCT-CGCCTTGAGCGCGGCCCAGTCCCAGAGACCCGAC--GTCGGCGTG----ACG 32934 Query 213117 TTCCACATGTCAAACTGCAAGATGCCTTTGCTCACGGGGCTGCCCTGGTAAGAGGAGTAG 213176 ||||||||| ||||| |||||||| ||||||||||| |||| ||| | ||| Sbjct 32933 CCCCACATGTCGAACTGGAAGATGCCCTTGCTCACGGGCGAACCCTCGTAGCTGCCGTAC 32874 Query 213177 GGGCCATGCTCCTTGGCCAGCTCGCAGGACGCCTGCAGGGCAGCGTAGTAGATGGTTTCA 213236 ||||| |||||| || ||||| || |||| || || | |||| | || || Sbjct 32873 GGGCCGTGCTCCCGTGCGAGCTCCATCGAGGCCTCCATAGCGCCAAAGTACAGCGTCTCG 32814 Query 213237 AATATCTCCCTGTTGAGCTTCTTGGCCTCTGGGGACGTGAA-GGGCATCATCATGCGTTG 213295 || || | | ||||||||| |||||| | | ||| | | | | |||| | Sbjct 32813 AAGATGTTCTTGTTGAGCTCGCGGGCCTCGTCGCTCTCGAACGCGTAGC-CCATGAGGAT 32755 Query 213296 GAACACATCAGCCAGCCCCTGGACCCCGATGCCGATGGGTCTGTGTCTCAGGTTAGACTT 213355 |||| | || || || ||||| || ||||||||||| || | ||| | |||||| || Sbjct 32754 GAACGCGTCCGCGAGACCCTGCACGCCGATGCCGATCGGGCGGTGGCGCAGGTT--GCT- 32698 Query 213356 GGAGCAC-TCCTC---CAAGGGGTAAAAGTTGCAGTCGATGATCTTGTTGAGGTTGCGGG 213411 | || | |||| | ||||| ||||| |||||||| |||||| |||||||| | Sbjct 32697 -GCGCTCGGCCTCGGGGATCGGGTAGTAGTTGATGTCGATGACCTTGTTCAGGTTGCGCG 32639 Query 213412 TGGCCACTTTGGTGACATGGGCCAGGTACTCGTGATTGAACACGTAGCCC---CCGTCCT 213468 || | || ||||||| | | || | | ||||| | || | |||| Sbjct 32638 TGACGACCTTGGTGATGTCGTAGAGCTTC------TTGAAGTCAAAGGTCTTGTCGTCGG 32585 Query 213469 GCACAAACTCAGGCAGGGCGATGCTGGCCAGGTTGCAAACGGCCACCTCCT-GAGAGTCT 213527 |||||||| | ||| |||||| || |||||||| || || ||||| | | | | | Sbjct 32584 TCACAAACTTGGACAGCGCGATGGACGCGAGGTTGCACACCGCGACCTCATCGGGCGAC- 32526 Query 213528 GTGTACTCCATGATCTCGGTGCACAGGTTGCTGCATCGGATGGTGCCCAGGTTCTGGTGG 213587 |||||||| | | |||| ||| |||||||| | ||||| ||||| |||||||| ||| Sbjct 32525 GTGTACTCGAGCACCTCGCAGCAGAGGTTGCTCGAGCGGATCGTGCCGAGGTTCTGCTGG 32466 Query 213588 TTTGACTTTGCGTTGGCA-GAATCCTTGTAGAGCATGTAGGGGGACCCGGTCTCTAGCTG 213646 || ||| ||||| | ||| || |||||||| |||||||| || | || ||||| | ||| Sbjct 32465 TTCGAC-TTGCGGTTGCACGAGTCCTTGTACAGCATGTACGGCGTGCCCGTCTCGATCTG 32407 Query 213647 GGACACCAGTATCTGGCTCCAGAGGTACCTGGCCTTGACCACCCGCCTGACAGCTC-CGG 213705 ||| | || ||| | |||||| | | || || || || | || | ||| Sbjct 32406 CGACTCGAGGATCGCGAACCAGAGCTGCTGCGCGCGGA----TCGTCTTGC-GCGCGCGG 32352 Query 213706 GCGTAGC-CTCGTACTGTTCGTAGAGCTCGTTGAATTCGTGGCCCCAGACCCTGTCCAGT 213764 | | || ||||||||| | ||| ||| | | ||| |||| |||||| | ||| || Sbjct 32351 CCCTCGCGCTCGTACTGGTGGTACAGCGCCTCGAACTCGTCGCCCCACGTCGTGTAGAGC 32292 Query 213765 CCCGG-ACAGGATGCGGGACACATGAGGCTCCAGTCCCCGTCATCTCTGACTCTCTGCAT 213823 ||||| | | |||| || | |||||||| || |||| | ||| | || ||| Sbjct 32291 CCCGGCGCCTCGTTCGGG-CAGAACAGGCTCCACTCGCCGTTGGCCTCGACGCGCTTCAT 32233 Query 213824 GAACAGGTCCGGGACCCACAGCGCGGTGAACAGGTCCCTGGTCC---TCCTCTCGTCCAC 213880 ||| || || |||| ||||| |||| ||| || || | | | | ||||| Sbjct 32232 GAAGAGATCGGGGATCCACATCGCGTAGAAGAGATCACGCGCGCGGTGCAGCTCGT---T 32176 Query 213881 TCCAGAGTTTTTGCGCAGATCTAGAAAGTCAAAGATGTCCGCGTGCCACGGCTCCATGTA 213940 || ||| || || || || || || |||||||| |||||||||||||||| ||| Sbjct 32175 GCCGTGGTTCTTCTTGAGGTCCAGGAACTCGAAGATGTCGGCGTGCCACGGCTCCAGGTA 32116 Query 213941 GATGGCAAAGGCGCCCGGCCTCTT---GCCGCCCTGGTCCACCAGCCTGGCCACCATGTT 213997 || || || | |||| | ||| |||||||||||| || | ||| ||| Sbjct 32115 CATCGCGAACGAGCCCTTGCGCTTGCCGCCGCCCTGGTCGACGTAGCGCGCCGTGTCGTT 32056 Query 213998 GAAGATGCGCAGGACGGGTACCAGCCCGTTGGACTGTCCGTTGGTTCCCGCTATATACGA 214057 ||||| |||||| | ||| || || ||||| ||| ||||| || || || ||||| Sbjct 32055 GAAGACGCGCAGCATGGGCACGAGGCCGTTCGACGAGCCGTTCGTGCCGCGGATGTACGA 31996 Query 214058 GCCGGAGGCCCTCAGGTTGCTCATGGAGAGCCCTATGCCACCGGCGTACTTGGAGATCAT 214117 | | || | | |||| || | || || ||||| || || |||||||||| Sbjct 31995 GTTCGTCGCGCGGATGTTGTGCACGCTGACGCCGATGCCGCCAGCCCACTTGGAGATGCA 31936 Query 214118 GGCGCAGCGCCTCACAGTCTCCATGATGCCGGCCATGCTGTCATCTGTGAGGTTCAGCAA 214177 ||||| || | | || || |||||| | || ||| || | | | |||| Sbjct 31935 CGCGCACTGCTTGAGCGTGTCGTAGATGCCCTCGATCGAGTCGTCCTTCATGGCGAGCAG 31876 Query 214178 GAAGCAGCTCGAGAGCTGGGGCCTGGACGAGCCAGAGTTGAAAAGCGTGGGGCTGGCATG 214237 |||||| ||| ||||| || | | || ||| | |||||| ||||| || | || || Sbjct 31875 GAAGCACGACGACAGCTGCGGGCGCGGCGTGCCCGCGTTGAACAGCGTCGGCGTCGCGTG 31816 Query 214238 GATCATAAACTTGTTAGAGAGGAGCCTGTAGGTCTCCAGGACTGAGGGGATGTCGTGCTT 214297 | | || | | || | | | ||| ||||| || | | | ||||||||||| Sbjct 31815 CGTGAAGAAGCTTTGCGACATGTACTCGTACGTCTCGAGCGCAGCGTCAATGTCGTGCTT 31756 Query 214298 GTGGAT 214303 |||||| Sbjct 31755 GTGGAT 31750 >seq4347 Length=93765 Score = 226 bits (250), Expect = 5e-54 Identities = 563/845 (67%), Gaps = 25/845 (3%) Strand=Plus/Plus Query 47842 GTAGTCCCCCACTCTATTCTCAAAGAAGTTTGTCTTCCCCTCCAACGAGATGTTCTCCAT 47901 ||| || || || | ||||| |||||||| ||||| |||| | |||||| | ||||| Sbjct 72435 GTACTCGCCAACGCGCTTCTCGAAGAAGTTGGTCTTGCCCTGGAGCGAGATCATGTCCAT 72494 Query 47902 GAAGAGGAAGGGGTTGGGTGTGTTATACACCCGTGTCAGGCCCATCTGTTCCAGCAGGTG 47961 || || ||||| | || || | | | | || | | | || ||| | Sbjct 72495 CCAGTCAAACGGGTTCGACACCTTGTAAATCTTGGCGACACCAAGCGCGTGGAGGAGGCG 72554 Query 47962 ATCCGCGACGTACTCGATGTATTTTGACATGAGGGTGATGTTCATGCCTATGAGG--GAC 48019 ||| ||| | |||||||||| | ||||||| | ||||||||| || || ||| Sbjct 72555 ATCGGCGCAGAACTCGATGTACTGGCACATGAGCGACGAGTTCATGCCGATCAGCTCGAC 72614 Query 48020 ACGG--GCAAAGCCTTTGTGAGAAACTCCTTCTCTATCTGCACGGCTTCCCCCACAATCT 48077 ||| || | ||| || ||||||||||| ||| ||||| || | | |||| Sbjct 72615 -CGGAAGCGAGTCCTG---GACGAACTCCTTCTCAATCGCGACGGCATCGCGAATGATCT 72670 Query 48078 GCTTAACGCGGGACTCTGAGGGTTTGTTGCGCAGGTGCTTGGCATAGAGCATGCAGGCAA 48137 | | ||| ||||| | | | |||||| || ||||| || |||| ||| || | Sbjct 72671 CATGGATGCGCGACTCCGGGAGCTTGTTGACAAG---CTTGGAGTACAGCAGGCAAGCGA 72727 Query 48138 AGTCCCTGTGCAAGCCTTCGTCCCGGCTGATGAGCACGTTGGAGAAGCAGAGACCAGGCA 48197 |||| | ||| | ||| || || || ||||||| |||| ||||||| ||| ||||||| Sbjct 72728 AGTCGCAGTGGAGGCCCTCATCGCGCGAGATGAGCTCGTTCGAGAAGCTGAGGCCAGGCA 72787 Query 48198 TGACCCCCCTCTGTTTGAGCCAGAAAATTGCCGCGAAAGAGCCAGAGAAGAAGATGCCCT 48257 ||| || | || ||||||||||| || | ||| ||||| |||||||| ||||||| Sbjct 72788 TGAGACCACGCTTCTTGAGCCAGAAGATGGAGCAGAACGAGCCCGAGAAGAAAATGCCCT 72847 Query 48258 CCACTGCCGCGAACGCGGTGAGCCTCTCTCCGAAAGAAGC---GTTCTTGTCTGAGATCC 48314 | || || ||||||||| | | ||| | |||| || | | ||| | || Sbjct 72848 CAACGGCAGCGAACGCGACAATGCGCTCAGCAAAAGCCGCGCGGCGCGAGTC---GCACC 72904 Query 48315 AGGAAAGCGCCCAGTCTGCCTTCTTCTTGATGCATGGCATCGTCTCTATGGCCCGGAAGA 48374 | |||||||||| |||||||||| | |||||| || ||||| ||||| |||| || Sbjct 72905 ACTTGAGCGCCCAGTGCGCCTTCTTCTGCACGCATGGAATGGTCTCGATGGCGCGGAGGA 72964 Query 48375 GCTTCTTGCACT-CACCTGCGTCCGCAACATAGGT---AGTGAGCAGCTTTGCGTACATC 48430 | | || || | ||| |||| | || || | |||||||| | ||||| | Sbjct 72965 GGTGGTTCTTCTCCGTCTG-GTCCTTGATGTACGTGTCAATGAGCAGC---GAGTACACC 73020 Query 48431 TCAGAGTGCACATTCTCTATAGCGATCTGGAACCCGTAGAAGGCCCTGGCCTCAAACACC 48490 || ||||| | ||||| || ||||||||||| || |||||| | |||||| ||| Sbjct 73021 TCCGAGTGGATGTTCTCAATGGCGATCTGGAAGCCATAGAAGCAACGCGCCTCAGGAACC 73080 Query 48491 TGCACTTCTGTGGAGAATCTCTCCAGCAGATTCTCATTGACTATCCCATCTGAAGCAGCA 48550 ||||| || || ||| || | || ||||| ||||| || || || || || Sbjct 73081 TGCACCTCGCTGCTGAAGTTCATCGCGAGGTTCTCGTTGACGATACCGTCGCTCGCCGCG 73140 Query 48551 AAGAAGGCAAGGACATGTTTAAGGAAATGGCGCTCGTTGTGGGTGAGAGCATTCCAGCCC 48610 ||||| || ||||| || || | || ||||||||||||| ||||| |||| || Sbjct 73141 AAGAACGCGAGGACGTGCTTGATAAAGTGGCGCTCGTTGTCCGTGAGGTTGCCCCAGTCC 73200 Query 48611 TGTACGTCTTTGCCCAGGTCCACTTCTTCCACAGTCCAGAAGGACGCGAGTGCTTTTTTG 48670 | | ||| | | || || | || || | ||||||||| ||| || || ||| Sbjct 73201 TTGAGGTCGTGCACGAGATCGATCTCCTCGGCGGTCCAGAAGCTCGCCTCGGCCTTCTTG 73260 Query 48671 TACAT 48675 ||||| Sbjct 73261 TACAT 73265 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 931428095713280