Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pythium_20insidiosum_20[genbank_20GCA_5F000764265.1_202014-10-06] 8,992 sequences; 45,609,708 total letters Query= NC_020852.1 Length=186468 Score E Sequences producing significant alignments: (Bits) Value seq3132 192 7e-44 seq4347 143 3e-29 seq7148 95.1 1e-14 >seq3132 Length=41768 Score = 192 bits (212), Expect = 7e-44 Identities = 572/865 (66%), Gaps = 23/865 (3%) Strand=Plus/Plus Query 75128 CGGGACTATGATTTTGGTTACTTTGGTCTCAAAACCCTTGAGAAGAGCTATCTTCAACGG 75187 || |||| ||| | | |||||||| |||| || || |||||| ||||| | || Sbjct 31633 CGCGACTTTGAGTACGACTACTTTGGCTTCAAGACGCTCGAGAAGTCGTATCTCCTCCGC 31692 Query 75188 CTCGATGGCATCCTCATGGAAACCCCACAGTACATGTTCATGCGGGTCGCAATCGGCATC 75247 ||| |||| || ||| || ||| | ||| | |||| ||||| |||||||| Sbjct 31693 GTCGGCGGCAAGGTCGCGGAGCGTCCGCAGCAGATGATTCTGCGTGTCGCCGTCGGCATC 31752 Query 75248 CACGGGGAAGACATTGATTCTGTCTTGGAGACATACGACAAGATGTCCCAAGGTATGTTC 75307 ||| | | |||||||| ||| | ||||| ||||| | ||||| ||| | | ||| Sbjct 31753 CACAAGCACGACATTGACGCTGCGCTCGAGACGTACGAGTACATGTCGCAAAGCTTCTTC 31812 Query 75308 ATTCACGCAACACCAACCCTCTTCAATGCTGGTACACCAAGACCGCAGATGTCCAGTTGC 75367 | ||||| || || || || ||||| || || || || | |||||| |||| ||| Sbjct 31813 ACGCACGCGACGCCGACGCTGTTCAACGCGGGCACGCCGCGCCCGCAGCTGTCGTCGTGC 31872 Query 75368 TTCCTTATCGCCAACAAGGAGGACTCAATCAACGGTATCTATGGAACTCTTACGGAGTGT 75427 ||||| |||||| ||||| ||||| ||| | || ||||| | || || | | |||| Sbjct 31873 TTCCTGCTCGCCATGAAGGACGACTCGATCGAGGGCATCTACGACACGCTCAAGCAGTGC 31932 Query 75428 GCGCAAATCTCAAAGTGGGCTGGGGGTATTGGGATGCACATCCATGATGTGAGAGCCAAT 75487 ||| ||||| ||||||||||| || || || | | | || | | | || | Sbjct 31933 GCGTGCATCTCCAAGTGGGCTGGCGGCATCGGCGTCAGCGTGCACAACATCCGCGCGACG 31992 Query 75488 AAATCTCGT--ATTCGGGGGACAAATGGTCAATCAGATGGTATTATTCCAATGCTTCGCG 75545 || ||||| || || || || || || || | || | | || ||||| |||| Sbjct 31993 AA--CTCGTACATCCGCGGCACGAACGGCTCGTCGAACGGCCTCGTGCCCATGCTGCGCG 32050 Query 75546 TATTTAACGCCACAGCGCGCTATGTAAATCA-AGCGG-GGC-GTCGCAAGGGGTCCATCG 75602 | || |||| ||| |||||||| || | || |||| ||| |||||||| || ||| Sbjct 32051 TCTTCAACGACACGGCGCGCTACGTCGACCAGGGCGGCGGCAAGCGCAAGGGCTCGTTCG 32110 Query 75603 CGGTCTACTTGGAACCATGGCATGCCGATATCATGGAGTTCCTTGA-GTTACGACTCAAC 75661 || | ||| |||| || ||||| ||||| ||| | |||||||| || | | || ||| Sbjct 32111 CGATGTACCTGGAGCCGTGGCACGCCGACATCTTCGAGTTCCTGGACCTCAAGA-AGAAC 32169 Query 75662 CAAGGTGACGAAGAGGCTCGGTG-TAGAGATCTCTTTTCATCCCTGTGGATTCCAGACCT 75720 || || ||| || || | | | | |||||||| | | ||||||| || || || Sbjct 32170 CACGGCAACG-AGCTGCACCGCGCGCGTGATCTCTTCTACGCGATGTGGATCCCCGATCT 32228 Query 75721 TTTCATGAAGCGGGTTGAGGAGGGTGGTCAATGGTCTCTTTTCTGTCCAGACAAGGCACC 75780 ||||||||||| || |||| || | ||| || ||||| || || |||| || Sbjct 32229 CTTCATGAAGCGCGTCGAGGCCAACGGCGAGTGGAGCCTGTTCTGCCCGAACGAGGCGCC 32288 Query 75781 AGGTCTCTCCGACG-CGGTGGGTGAGGAGTTTGAAGCCCTCTACACAAAGTATGAAGAGG 75839 || |||| | ||| || ||| || ||||| || || || ||| |||| || | Sbjct 32289 GGGGCTCTAC-ACGACGTGGGGCGACGAGTTCGAGGCGCTGTACCACCAGTACGAGCGCG 32347 Query 75840 AGGGTAGAGC---CAATGCGA-CTGTAC-CAGCCGCCGATGTTTGGAAGGCTATTCTCAA 75894 |||| | || ||| ||| | | | |||| || | ||| || || ||| | Sbjct 32348 AGGGCCGCGCGCGCAAGACGATCCGCGCGCAGCAGC-----TCTGGTTCGCGATCCTCGA 32402 Query 75895 ATCACAGACGGAGACTGGAACACCATATATGCTTTACAAGGATGCTTGTAACAAGAAGAG 75954 || |||| ||||| || || || || ||||| |||||||| | || ||| ||| Sbjct 32403 GTCGCAGATCGAGACGGGCACGCCGTACATGCTGTACAAGGACTCGTGCAACCGCAAGTC 32462 Query 75955 TAACCAAAAGAATTTGGGAACAATC 75979 ||||| |||| | || || ||| Sbjct 32463 GAACCAGCAGAACCTCGGCACGATC 32487 >seq4347 Length=93765 Score = 143 bits (158), Expect = 3e-29 Identities = 386/579 (67%), Gaps = 20/579 (3%) Strand=Plus/Minus Query 64948 ATTGACAAATACATTAAGGATGGATCTGAAAAGAAGCAGTTATTTGAAGCCATCCAAACT 65007 ||||||| ||||| ||||| | || ||||| || | | |||||| | || Sbjct 73004 ATTGACACGTACATCAAGGACCAGACGGAGAAGAACCACCTCCTCCGCGCCATCGAGACC 72945 Query 65008 GTACCATGTATTGAGAAGAAGGCGAAATGGGCAATGAAATGGTTTGACACAAAGTCTCGC 65067 | ||||| | ||||||||||| | ||||| | || |||| ||| | | | ||| Sbjct 72944 ATTCCATGCGTGCAGAAGAAGGCGCACTGGGCGCTCAAGTGGTGCGACTCGC-GCCGCGC 72886 Query 65068 TCCTTC-GCCGAGCGCCTTTTTGCGTTTGCGTGTGTGGAGGGTATCTTCTTCTCCGGGTC 65126 ||| || |||||| || | ||||| || || ||||| || |||||||| || || Sbjct 72885 GGCTTTTGCTGAGCGCATTGTCGCGTTCGCTGCCGTTGAGGGCATTTTCTTCTCGGGCTC 72826 Query 65127 ATTCTGCGCTATTTATTGGTTGAAGAAGCGGGGTCTCATGCCAGGCCTATGCTTCTCAAA 65186 |||||| | || | ||| | |||||||| ||||||||||| ||||| ||||||| || Sbjct 72825 GTTCTGCTCCATCTTCTGGCTCAAGAAGCGTGGTCTCATGCCTGGCCTCAGCTTCTCGAA 72766 Query 65187 TGAACTTATTTCCCGAGATGAGGGTCTCCACCAGGAGTTTGC---CGTGGAGCTCTTCAA 65243 || || || || || |||||||| |||||| || || || | || | || ||| Sbjct 72765 CGAGCTCATCTCGCGCGATGAGGGCCTCCACTGCGACTTCGCTTGCCTGCTGTACTCCAA 72706 Query 65244 GACTTTGCGTAATAGACCCACTACCGAA----ACTATCCACGCCATCGTGAAAGAGGCGG 65299 | ||| || | || || ||| | ||||| | ||| | || || | Sbjct 72705 G-CTT---GTCA---ACAAGCTCCCGGAGTCGCGCATCCATGAGATCATTCGCGATGCCG 72653 Query 65300 TTGAGATTGAGAAAGGGTTCATCTTGGACGCACTCCCATGTAATCTCATCGGTATGAACT 65359 | | ||||||||| | |||| || |||| | || || | || ||||| ||||||| Sbjct 72652 TCGCGATTGAGAAGGAGTTCGTCCAGGACTCGCTTCCGGTCGAGCTGATCGGCATGAACT 72593 Query 65360 CTGAGAAGATGTCCGAGTACATTGAGTATGTG-TCGGATCGTCTCCTCAAACAAGTTGGG 65418 | | |||| | ||||||| |||| | || | ||||| |||||| | |||| Sbjct 72592 CGTCGCTCATGTGCCAGTACATCGAGT-TCTGCGCCGATCGCCTCCTCCACGCGCTTGGT 72534 Query 65419 GT-GCCACCCATTTGGAACGCGAAGAATCCATTTGACTTTATGGAAAACATTAGCCTTGA 65477 || |||| |||| || | | ||| || ||||||| ||||| | || || | Sbjct 72533 GTCGCCA-AGATTTACAAGGTGTCGAACCCGTTTGACTGGATGGACATGATCTCGCTCCA 72475 Query 65478 TGGGAAGACCAACTTCTTTGAGAAGCGAGTTGGGGACTA 65516 || |||||||||||||| |||||||| ||||| || || Sbjct 72474 GGGCAAGACCAACTTCTTCGAGAAGCGCGTTGGCGAGTA 72436 >seq7148 Length=46129 Score = 95.1 bits (104), Expect = 1e-14 Identities = 270/410 (66%), Gaps = 30/410 (7%) Strand=Plus/Plus Query 13538 AAGTCCAAAATTACCGGTATTCCCAAGTTGGATGACGCGAACAAGGCGGGTACGGCACAA 13597 ||||| || | ||||| ||||| ||| | || || |||||| | || ||||| || | Sbjct 10992 AAGTCGAAGCTCACCGGAATTCCGAAGCTCGACGATGCGAACTACGCTGGTACAGCGAAG 11051 Query 13598 TCTGGAAAGTGTACTCTCATTGTCACAGAGGGTGATTCGGCTAAAACCCTCGCGGTTGCG 13657 | ||| || || |||||| | || ||||| || || || || ||| |||| | Sbjct 11052 GGTCAAAACTGCACGCTCATTTTGACTGAGGGCGAATCAGCCAAGACCTTCGCAATCAGT 11111 Query 13658 GGTCTCTCTGTCGTTGGTCGTGATCACTACGGTGTGTTCCCACTTCGCGGTAAATGTAAG 13717 || ||||| || ||||| ||||| | ||||||||||| ||||| || ||| | Sbjct 11112 GGACTCTCCGTTGTTGGACGTGACTATTACGGTGTGTTTCCACTGAAGGGCAAACTACTG 11171 Query 13718 AATGTTCGGGACGCTTCGGTGGCACAGCTCACATCA-----AACCAGGAG-TTCAACGAT 13771 |||||||| || || | | || |||| || | ||| ||||| |||| || Sbjct 11172 AATGTTCGTGAAGC----GAGTCA-TTCTCAAATTATGAAGAACGAGGAGATTCA--GAA 11224 Query 13772 CTCA-AGAAGATCCTTGGTCT--------TCAACAAGGAAAAGACTACCAAGATGTTTCT 13822 || | ||||||| | || || | ||||| | || | || |||| || Sbjct 11225 CTTAGTGAAGATCTTGGGACTCAAGCACGGCCACAAGTATGAGTCAACGAAGA-GT---- 11279 Query 13823 GAACTTCGCTATGGTCGTCTTATGATTATGACAGATGCCGATAATGATGGTTCTCACATC 13882 || || || || | || ||||| ||| ||||| ||| |||| || ||||||| Sbjct 11280 ---CTACGTTACGGGCACCTGATGATCATGGCAGATCAGGATCATGACGGCAGTCACATC 11336 Query 13883 AAGGGTCTCATCCTAAATATGATCCACTACTTCTGGCCCAGTCTTCTCAA 13932 |||||||| || | ||| | || || |||||||||| |||||| || Sbjct 11337 AAGGGTCTGGTCATCAATTTTATTCATCACTTCTGGCCGTCTCTTCTGAA 11386 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 596502545576960