Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pythium_20insidiosum_20[genbank_20GCA_5F000764265.1_202014-10-06] 8,992 sequences; 45,609,708 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq6420 131 5e-25 seq3532 131 5e-25 seq3887 105 2e-17 seq8671 87.8 5e-12 >seq6420 Length=81014 Score = 131 bits (144), Expect = 5e-25 Identities = 266/392 (68%), Gaps = 6/392 (2%) Strand=Plus/Plus Query 302476 TCAACCTTGATTGGGTCAATTCCGTCATCGCCGTAGGAATACTGAATGATTTTGTTCTTG 302535 |||||| | || ||| || || || || || || | |||||||||| | | || Sbjct 4673 TCAACCCACACTGCGTCCATGCCATCTTCACCATACAAGAACTGAATGATCTCGCCCTGA 4732 Query 302536 TTATTTCTTACGGTCATATCATAACCAATCATAATGTCTTCCATACTCTTGATTAAACGA 302595 ||| | ||||| ||| |||| | |||| | |||||| |||| | |||| Sbjct 4733 GCATTGCGGACGGTACCATCGTAACGAGTCATCACCGACTCCATAGCTTTGACAAGACGA 4792 Query 302596 CGCTGAATATAACCAGTTGTAGATGTTTTTACAGCTGTATCAATTAGACCAACACGACCA 302655 |||||||| ||||| ||| || || || || || |||||||| | ||| |||||||| Sbjct 4793 CGCTGAATGTAACCCGTTTCAGCGGTCTTGACGGCGGTATCAATCAAACCTTCACGACCA 4852 Query 302656 CCCATAGCATGGAAGAATAGCTCTTCCGGTCGTAGCCCCCCAATAAAGGAGCTCTCAACG 302715 ||||| || |||||||| | ||||| ||| || ||| | | ||| | || ||| Sbjct 4853 CCCATGGCGTGGAAGAAGAACTCTTGCGGGGTTAAACCCTTCAAGTACGAGTTTTCGACG 4912 Query 302716 AAACCACGCGCCTCGGG--CGA-ATCGTCGAACTTGGTAAAGTGTGGCAGGGTCCTGTTC 302772 |||||||| |||||| | | ||| || ||| |||| || || || || Sbjct 4913 AAACCACGACTCTCGGGGCCAAGATCATC---CTTTCCGTAGTGGGGAAGAGTTCTCCGG 4969 Query 302773 TCATAGCCGTATGGGATACGCTTTCCATCAACGTTCTGCTGTCCCAGGCACGAAATCATC 302832 | |||| || || ||||||||||| || ||||||||||| |||| |||| ||| ||| Sbjct 4970 TTGAAGCCATACGGAATACGCTTTCCTTCGACGTTCTGCTGACCCACACACGCAATAATC 5029 Query 302833 TGCGAAATATTTAAATCACTGCCCTTGGAGCC 302864 || || || || | | ||||||||||| Sbjct 5030 TGGGAGATGTTAATGTACGATCCCTTGGAGCC 5061 >seq3532 Length=65429 Score = 131 bits (144), Expect = 5e-25 Identities = 266/392 (68%), Gaps = 6/392 (2%) Strand=Plus/Minus Query 302476 TCAACCTTGATTGGGTCAATTCCGTCATCGCCGTAGGAATACTGAATGATTTTGTTCTTG 302535 |||||| | || ||| || || || || || || | |||||||||| | | || Sbjct 5232 TCAACCCACACTGCGTCCATGCCATCTTCACCATACAAGAACTGAATGATCTCGCCCTGA 5173 Query 302536 TTATTTCTTACGGTCATATCATAACCAATCATAATGTCTTCCATACTCTTGATTAAACGA 302595 ||| | ||||| ||| |||| | |||| | |||||| |||| | |||| Sbjct 5172 GCATTGCGGACGGTACCATCGTAACGAGTCATCACCGACTCCATAGCTTTGACAAGACGA 5113 Query 302596 CGCTGAATATAACCAGTTGTAGATGTTTTTACAGCTGTATCAATTAGACCAACACGACCA 302655 |||||||| ||||| ||| || || || || || |||||||| | ||| |||||||| Sbjct 5112 CGCTGAATGTAACCCGTTTCAGCGGTCTTGACGGCGGTATCAATCAAACCTTCACGACCA 5053 Query 302656 CCCATAGCATGGAAGAATAGCTCTTCCGGTCGTAGCCCCCCAATAAAGGAGCTCTCAACG 302715 ||||| || |||||||| | ||||| ||| || ||| | | ||| | || ||| Sbjct 5052 CCCATGGCGTGGAAGAAGAACTCTTGCGGGGTTAAACCCTTCAAGTACGAGTTTTCGACG 4993 Query 302716 AAACCACGCGCCTCGGG--CGA-ATCGTCGAACTTGGTAAAGTGTGGCAGGGTCCTGTTC 302772 |||||||| |||||| | | ||| || ||| |||| || || || || Sbjct 4992 AAACCACGACTCTCGGGGCCAAGATCATC---CTTTCCGTAGTGGGGAAGAGTTCTCCGG 4936 Query 302773 TCATAGCCGTATGGGATACGCTTTCCATCAACGTTCTGCTGTCCCAGGCACGAAATCATC 302832 | |||| || || ||||||||||| || ||||||||||| |||| |||| ||| ||| Sbjct 4935 TTGAAGCCATACGGAATACGCTTTCCTTCGACGTTCTGCTGACCCACACACGCAATAATC 4876 Query 302833 TGCGAAATATTTAAATCACTGCCCTTGGAGCC 302864 || || || || | | ||||||||||| Sbjct 4875 TGGGAGATGTTAATGTACGATCCCTTGGAGCC 4844 >seq3887 Length=15026 Score = 105 bits (116), Expect = 2e-17 Identities = 178/258 (69%), Gaps = 0/258 (0%) Strand=Plus/Plus Query 251403 GGCGATAAGACCACACTTATTACACACATGGACGCTGTAAGCATCAGATGCGTCATATAG 251462 |||||| | |||||| ||| ||||| || |||| || || || || | | | || Sbjct 2789 GGCGATGATACCACAGATATCGCACACGTGCACGCGATACGCGTCCGAGTTGGCGAAGAG 2848 Query 251463 CCGACCCTTGGTGAAGCGAGATGCACCGTGTGAAATCATACAATCACGCTCCATTTCACC 251522 || || || |||| | | ||||| || |||| ||| ||||||||||| || || Sbjct 2849 GCGGTCCATGAGGAAGTTGGCCGAGCCGTGCGAGATCAGACAGTCACGCTCCATCTCTCC 2908 Query 251523 GAAACGAAGACCACCATCGCGAGCCCTACCCTCGGCAGGCTGACGAGTGAGATTAACCAT 251582 | ||| |||||||| || || || | |||||| ||||| || || || | || Sbjct 2909 CATACGCAGACCACCTTCTCGCGCACGACCCTCCATGGGCTGGCGCGTCAGCATCGTCAC 2968 Query 251583 AGGACCGATGGAGCGGCTATGTTGCTTATCATTTACCATATGCTTGAGACGCTGGTAGAA 251642 || ||| ||||| || ||| || | |||||||||||||||||||||||||| Sbjct 2969 GGGGCCGCGCGAGCGCGAGTGGATCTTGTCGTCGACCATATGCTTGAGACGCTGGTAGAA 3028 Query 251643 TGCGGGACCGATGAAGAT 251660 | || ||||||||||| Sbjct 3029 CGTCGGGCCGATGAAGAT 3046 >seq8671 Length=27443 Score = 87.8 bits (96), Expect = 5e-12 Identities = 108/148 (73%), Gaps = 0/148 (0%) Strand=Plus/Minus Query 354016 GCGAGAGCACCAAGCGAGTCACGGTCGAGGAAATTAGTAGGTTCGTCAAGGATAAGAACG 354075 ||||| |||||||||| | ||||||||| | || || |||||||| || | || | | Sbjct 14067 GCGAGCGCACCAAGCGCCGCGCGGTCGAGGTAGTTGGTCGGTTCGTCGAGCACGAGCAGG 14008 Query 354076 TGCGGCTCCATCCACATTGCTGCAGCCAGAACTACCTTAACCTTCTGTCCGCCTGATAGT 354135 ||||| || |||||| || || || | || | ||| |||||||||||||| || || Sbjct 14007 TGCGGACGCACCCACATCGCGGCCGCGATCACGAGCTTGACCTTCTGTCCGCCCGAGAGC 13948 Query 354136 GCGTGAATCTTGGAATATGTACCGAACT 354163 || | |||||| || || || |||| Sbjct 13947 CCGCGGATCTTGCCGTACGTGCCAAACT 13920 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1471648031894304