Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pythium_20insidiosum_20[genbank_20GCA_5F000764265.1_202014-10-06] 8,992 sequences; 45,609,708 total letters Query= NC_021923.1 Length=140633 Score E Sequences producing significant alignments: (Bits) Value seq3132 199 4e-46 seq2702 120 3e-22 seq1220 109 5e-19 >seq3132 Length=41768 Score = 199 bits (220), Expect = 4e-46 Identities = 952/1482 (64%), Gaps = 66/1482 (4%) Strand=Plus/Minus Query 138540 GTAAATGTTGTTGGTGAAAGGCTCAAACGATTCGTTGTTTCCCAGAATCTGAGCCGTGGT 138599 ||| |||||| | ||||| ||||| | ||| |||||||| || || ||||| || || | Sbjct 33096 GTACATGTTGGTCGTGAACGGCTCGATCGACTCGTTGTTGCCGAGGATCTGCGCGGTCGA 33037 Query 138600 CGCGGTCGGCATGTACGCCACCAAAAGAGAATTCCGTAAACCGTGAAGCTTGATTCGTTC 138659 ||| |||||||| ||| | || || || || || | |||| || || | | Sbjct 33036 CGCCGTCGGCATCGGCGCGAGCAGCAGCGAGTTGCGCACGCCGTACTGCGCGACGCTCGC 32977 Query 138660 CTTGAGCGACGACCAGTCCCACAAATCGC---TAGGTTTTTTGTTCCACATATCGTACTG 138716 |||||||| | ||||||||| | | | | || | | |||||| ||| |||| Sbjct 32976 CTTGAGCGCGGCCCAGTCCCAGAGACCCGACGTCGGCGTGACGCCCCACATGTCGAACTG 32917 Query 138717 TAACATTCCCAAACTTGCGGGACTGCCTTCGTACGAATCGTATACACCAAACTCTTGCGC 138776 || || ||| || |||| || ||||| |||| || ||| | || Sbjct 32916 GAAGATGCCCTTGCTCACGGGCGAACCCTCGTAGCTGCCGTACGGGCCGTGCTCCCGTGC 32857 Query 138777 CAACTCGTTGCTCGCCTCGAGCGCACCATAGTAAATAGTTTCGGCAATCTGCTGATTGAG 138836 | ||| | ||||| | || ||| |||| | || ||| || | || ||||| Sbjct 32856 GAGCTCCATCGAGGCCTCCATAGCGCCAAAGTACAGCGTCTCGAAGATGTTCTTGTTGAG 32797 Query 138837 CAATCGGGCCTCGGCGCTCTCGTACGGCATGCGGAGCATCGTGAACGCGTCGGCCAGCCC 138896 | ||||||||| |||||||| ||| || | | |||||||||| || || || Sbjct 32796 CTCGCGGGCCTCGTCGCTCTCGAACGCGTAGCCCATGAGGATGAACGCGTCCGCGAGACC 32737 Query 138897 TTGCACGCCCACTCCGACAGGGCGATGGCGCAGATT--TGACGCTTTTGCGGCTTCG--- 138951 |||||||| | |||| ||||| |||||||| || || |||| |||| ||| Sbjct 32736 CTGCACGCCGATGCCGATCGGGCGGTGGCGCAGGTTGCTG-CGCT----CGGCCTCGGGG 32682 Query 138952 ATAGGATAATAGTTTACATCGATGATTTTGTTTAAATTTCGCACGACCACCTTAGTCGTA 139011 || || || ||||| | ||||||| ||||| | || ||| ||| ||||| || | Sbjct 32681 ATCGGGTAGTAGTTGATGTCGATGACCTTGTTCAGGTTGCGCGTGACGACCTTGGTGATG 32622 Query 139012 TGCTTTAATCGT-TCAAAATCGTATGTGCCCCCGTTGTCGTCGACGACGTCGACAAATTT 139070 | | | | | | | || || | || ||||||||| ||| ||||| || Sbjct 32621 T-CGTAGAGCTTCTTGAAGTCAAAGGTC------TTGTCGTCG-----GTC-ACAAACTT 32575 Query 139071 GTTGACACAA--ATCGAGGCTATGTTGCACACCGCCACTTCGTCGGG-GTCGCTGTATTC 139127 | |||| || || || | |||||||||||| || || ||||| | || |||| || Sbjct 32574 G--GACAGCGCGATGGACGCGAGGTTGCACACCGCGACCTCATCGGGCGACG-TGTACTC 32518 Query 139128 GACAATTTCGGCACACAAATTACTACACTTGATCGTACCTAAATTTTGTTGATTGCTTTT 139187 || | ||| || | || || | |||||| || | || || || || || Sbjct 32517 GAGCACCTCGCAGCAGAGGTTGCTCGAGCGGATCGTGCCGAGGTTCTGCTGGTTCGACTT 32458 Query 139188 TCGGTTACAAGCATCTTTGTAAAGCATATACGGTGTGCCAGTTTCCACTTGTGTCTCTAT 139247 ||||| || | || ||||| ||||| ||||| ||||| || || | || | ||| | Sbjct 32457 GCGGTTGCACGAGTCCTTGTACAGCATGTACGGCGTGCCCGTCTCGATCTGCGACTCGAG 32398 Query 139248 AATGAATTTGAACAAGTCC--CTA-GCTTGTAT----TTGACGCACGTAAAGTTCGTCGC 139300 || |||| || | || || | || ||| ||| || | | |||| Sbjct 32397 GATCGC---GAACCAGAGCTGCTGCGCGCGGATCGTCTTG-CGCGCGC---GGCCCTCGC 32345 Query 139301 GCTCGTACTTTTCGTAGAGTTCGTCGAA-TCGTTCACCGTAGGCGTCAGAAAGATCGC-- 139357 ||||||||| | ||| || | ||||| |||| | || | |||| ||| | | Sbjct 32344 GCTCGTACTGGTGGTACAGCGCCTCGAACTCGT-CGCCCCA--CGTCGTGTAGAGCCCCG 32288 Query 139358 GACACTTGTCAGGACACATGAGCGACCATACGCCGTTCGCCTTGACGCGCCTCATGAACA 139417 | || || || || | || ||| ||||||| |||| ||||||| ||||||| | Sbjct 32287 GCGCCTCGTTCGGGCAGAACAGGCTCCACTCGCCGTTGGCCTCGACGCGCTTCATGAAGA 32228 Query 139418 GATCCGGAATCCACAAAGCGAACAGCAAATCGCGCGCCTTCTT-ATCTTCCGAACCCATG 139476 |||| || ||||||| ||| | | | ||| ||||| | | || || || || Sbjct 32227 GATCGGGGATCCACATCGCGTAGAAGAGATCACGCGCGCGGTGCAGCT--CGTTGCCGTG 32170 Query 139477 TTACGT-TTCATGTTAAGGAAATCAAAAACGTCAGCGTGCCATGGTTCCAGATAGATGGC 139535 | | | || | || ||||| || || | ||| |||||||| || ||||| || || || Sbjct 32169 GTTCTTCTTGAGGTCCAGGAACTCGAAGATGTCGGCGTGCCACGGCTCCAGGTACATCGC 32110 Query 139536 CATTGCGCCTTTCCGTTTGCCACCT---TGATCGACGTGTCGTACAGCATTATTGAATAC 139592 | | ||| || || ||||| || || ||||||| || | | | ||||| || Sbjct 32109 GAACGAGCCCTTGCGCTTGCCGCCGCCCTGGTCGACGTAGCGCGCCGTGTCGTTGAAGAC 32050 Query 139593 GCGCAACATCGGCTCCAGACCGCTCGCTGTTCCGTTGGTGCTACGGATGGGACTGTTGCG 139652 ||||| ||| ||| | || ||| ||| | ||||| |||| |||||| ||| Sbjct 32049 GCGCAGCATGGGCACGAGGCCGTTCGACGAGCCGTTCGTGCCGCGGATGTACGAGTTCGT 31990 Query 139653 AGCTCGGACGTCATGTACATTGATGCCGATTCCGCCGCCAAATTTGGATATTAAAACGCA 139712 || |||| || || || ||| |||||| ||||| | | ||||| || | |||| Sbjct 31989 CGCGCGGATGTTGTGCACGCTGACGCCGATGCCGCCAGCCCACTTGGAGATGCACGCGCA 31930 Query 139713 ATCGCGTAAT-GTCTCGTATATACCTCTTATGCTGTCGTCCTGCATCGTGACCAGAAAGC 139771 | || | | || ||||| || || || |||||||| ||| | || ||| |||| Sbjct 31929 CT-GCTTGAGCGTGTCGTAGATGCCCTCGATCGAGTCGTCCTTCATGGCGAGCAGGAAGC 31871 Query 139772 ATGACGAAAGTTGCGGTAGTTTCGTGCCGGCTGCAAACAGAGTAGGACTCGCGTGCGTGA 139831 | ||||| || ||||| | |||||| || ||||| || || |||||||||||| Sbjct 31870 ACGACGACAGCTGCGGGCGCGGCGTGCCCGCGTTGAACAGCGTCGGCGTCGCGTGCGTGA 31811 Query 139832 ACATTTGTTTCGACATCAATTCGTACGTTTCGATGGCGCTCACAATATC--CCTTCCGTG 139889 | | || |||||| | |||||||| |||| || |||| || ||| ||| Sbjct 31810 AGAAGCTTTGCGACATGTACTCGTACGTCTCGAGCGCAGCGTCAATGTCGTGCTT--GTG 31753 Query 139890 GATACCGACAGAGACTCGCATCAGCATATGTTGGATCCGTTCGGCCACCGCGCCCTCGAt 139949 ||| ||||| | ||| |||| | ||| || || || || || ||| ||| ||| Sbjct 31752 GATGCCGACGGCGACACGCAGAATCATCTGCTGCGGACGCTCCGCGACCTTGCCGCCGAC 31693 Query 139950 ttttttCAGATAACCGTTCTCTAGGGTCTTGTAGCCAAAGTA 139991 ||||| ||||| || |||||| |||||||||| Sbjct 31692 GCGGAGGAGATACGACTTCTCGAGCGTCTTGAAGCCAAAGTA 31651 >seq2702 Length=56295 Score = 120 bits (132), Expect = 3e-22 Identities = 173/244 (71%), Gaps = 0/244 (0%) Strand=Plus/Plus Query 24703 GATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCAC 24762 |||||||||||| | || || || ||||| || || || |||||||| || || | | Sbjct 26764 GATGCAGATCTTCGTCAAGACTCTGACCGGCAAGACGATCACGCTCGACGTCGAGCCTTC 26823 Query 24763 CGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822 |||| | || | || || || |||||||| ||||| || ||||| ||||| ||||| Sbjct 26824 GGACAGCATTGACAATGTCAAGCAGAAGATCCAGGACAAGGAGGGAATCCCTCCGGATCA 26883 Query 24823 ACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAA 24882 || || ||||||| ||||| || ||||| ||||| | | | || || || || Sbjct 26884 GCAGCGCCTGATCTTCGCCGGCAAGCAGCTCGAGGACGGCCGCACGCTCTCGGACTACAA 26943 Query 24883 CATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGGCGGAACTGAGCC 24942 ||| || ||||| ||||| || ||| ||||| | || |||| || || | | ||||| Sbjct 26944 CATCCAGAAGGAGTCGACGCTCCACCTGGTGCTCCGCCTGCGTGGTGGTGCCATCGAGCC 27003 Query 24943 AACG 24946 ||| Sbjct 27004 CACG 27007 >seq1220 Length=9499 Score = 109 bits (120), Expect = 5e-19 Identities = 161/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||||||||| | || ||||| || || || || || |||||||| || || | | Sbjct 34 ATGCAGATCTTCGTGAAGACGCTGACGGGCAAGACGATCACGCTCGACGTGGAGCCGTCG 93 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||| | | || | || || || ||||| || ||||| || || || || || || || Sbjct 94 GACTCGATCGACAACGTCAAGCAGAAGATTCAGGACAAGGAGGGCATTCCGCCGGACCAG 153 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || || ||||||| || || || ||||||||||| | | |||| || || ||| Sbjct 154 CAGCGCCTGATCTTCGCTGGCAAGCAGCTGGAGGACGGCCGCACGCTGTCGGACTACAAC 213 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGGC 24931 || || ||||| ||||| || ||| ||||| |||| |||| || ||| Sbjct 214 ATCCAGAAGGAGTCGACGCTGCACCTGGTGCTGCGTCTGCGTGGTGGC 261 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 449847031509760