Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pythium_20insidiosum_20[genbank_20GCA_5F000764265.1_202014-10-06] 8,992 sequences; 45,609,708 total letters Query= NC_024625.1 Length=151109 Score E Sequences producing significant alignments: (Bits) Value seq3132 625 3e-174 seq4347 159 3e-34 seq2702 143 3e-29 seq1220 136 4e-27 seq6188 95.1 1e-14 >seq3132 Length=41768 Score = 625 bits (692), Expect = 3e-174 Identities = 1263/1848 (68%), Gaps = 57/1848 (3%) Strand=Plus/Minus Query 147945 GGTTGAGTGCGCAGATAGTACATGCCCGTCTTGAGGCCCATGCGCCATGCGTAGTCGTGC 148004 ||| | |||||||| |||||||||||||||||||| ||| | ||| |||||| |||| Sbjct 33449 GGTCGCGTGCGCAGGTAGTACATGCCCGTCTTGAGACCCTTCTTCCACGCGTAGAAGTGC 33390 Query 148005 ACCGACGACATGAGCGTGTACGTCGGGTGCGGCACAAACAGATTAAACGACTGGCTCTGG 148064 | |||| || || |||||| | || | || || | ||||||||||||| Sbjct 33389 ATGGACGTCAGCTTGCTGATCGTCGGCTCCGCGATGTGCACGTTGAGCGACTGGCTCTGG 33330 Query 148065 TCAATGAACGCGCCACGGTCAGCGGCCATTTCAATGAGTCGCTTTATCTTCATCTCCCAG 148124 ||| | ||||| ||||| |||||||| || | | ||| ||| |||||||| Sbjct 33329 CAGATGTAGGCGCCGCGGTCGGCGGCCATGTCGAGCACGGCCTTCTGCTTGATCTCCCAC 33270 Query 148125 GCCGTCTTGTACAGCCGCTTGATATGATCGGGAATGCCGTCGATGCGCTGCACCGAGCCG 148184 | ||||||||| | ||| | || || || || | | ||||||||||||| Sbjct 33269 ACGGTCTTGTACTTCTCCTTCACGGCGTCCGGGATCACGCGCACGTTCTGCACCGAGCCG 33210 Query 148185 CGGTGCGCAAAAATCTGATTGCGCATTTCGTCCGTGTATAGGTTGAGCTCGATCAGGTCA 148244 ||| | ||||| ||||||| ||| ||| | | | ||||||||| || || Sbjct 33209 TGGTCGTGGAGGATCTGGTTGCGCACCTCGGGCGTCCAGATGCCGAGCTCGATGAGCTCC 33150 Query 148245 TCGATCAGATACTGATTCACCACCTGAAACTCGCCGGCGAGCACGCGCCGCAGATACACG 148304 | || || |||| ||||| | | |||||||| ||||||||||| || |||| | Sbjct 33149 TTCATGAGGTACTTGTTCACGATCGTGAACTCGCCAGCGAGCACGCGGCGGTTGTACATG 33090 Query 148305 TTGCTCGTAAACGGTTCAAACGACTCGTTGTTGCCCAAAATCTGCGCGGTCGTTGCCGTG 148364 ||| |||| ||||| || | ||||||||||||||| | ||||||||||||| ||||| Sbjct 33089 TTGGTCGTGAACGGCTCGATCGACTCGTTGTTGCCGAGGATCTGCGCGGTCGACGCCGTC 33030 Query 148365 GGCATGTACGCTACCAGCAGCGAGTTGCGCAAACCGCGATTTTTTATTTTGCGCTTCAGA 148424 ||||| ||| | ||||||||||||||||| ||| | | | ||| || Sbjct 33029 GGCATCGGCGCGAGCAGCAGCGAGTTGCGCACGCCGTACTGCGCGACGCTCGCCTTGAGC 32970 Query 148425 GCCGCCCAGTCCCAGAG---CGGCGACGGTGTCACGTTCCACATGTCGTACTGCAGAATG 148481 || |||||||||||||| || || ||| || ||| |||||||||| |||| | ||| Sbjct 32969 GCGGCCCAGTCCCAGAGACCCGACGTCGGCGTGACGCCCCACATGTCGAACTGGAAGATG 32910 Query 148482 CCGCGGCTAGCGGGGCTGCCCTCGTACGAGCTGTACGGTCCGTGCGCCGCCGCCAGTTCG 148541 || ||| |||| |||||||| || |||||| |||||| || || || || Sbjct 32909 CCCTTGCTCACGGGCGAACCCTCGTAGCTGCCGTACGGGCCGTGCTCCCGTGCGAGCTC- 32851 Query 148542 CAGCTCG-CCTCGAGCGCGCCGTAGTAAATCGTCTCGGCAATTTGCCTGTTGAGCAGCGC 148600 || | | |||| | ||||| |||| | ||||||| || | | |||||||| ||| Sbjct 32850 CATCGAGGCCTCCATAGCGCCAAAGTACAGCGTCTCGAAGATGTTCTTGTTGAGCT-CGC 32792 Query 148601 CGCCGAC-TCGCTTTCGTACGGCATA-CGCAGCCGCACAAACGCGTCGGCAAGGCCCTGT 148658 | | | ||||| ||| ||| | || | || | | |||||||| || || ||||| Sbjct 32791 GGGCCTCGTCGCTCTCGAACG-CGTAGCCCATGAGGATGAACGCGTCCGCGAGACCCTGC 32733 Query 148659 ACGCCCACGCCAATGGGCCGGTGTTTAATGTTGGAGAGGCGCGCGCTCTCGAG---CGGA 148715 ||||| | ||| || || ||||| | |||| | ||| || |||| | ||| Sbjct 32732 ACGCCGATGCCGATCGGGCGGTGGCGCAGGTTGCTG---CGCTCGGCCTCGGGGATCGGG 32676 Query 148716 TAGTGGTTGCGGTCGATGATCTTGTCAAGATTGCGCACCACCACCTTTGTAATTCTGCGC 148775 |||| |||| |||||||| ||||| || |||||| || ||||| || || | Sbjct 32675 TAGTAGTTGATGTCGATGACCTTGTTCAGGTTGCGCGTGACGACCTTGGTGATGTCGTAG 32616 Query 148776 AGC------AATTCAAAATCGTACTTGTCATCTACGATGCATCGGTTCACGGCGATAGAG 148829 ||| || ||||| || |||||| || | | | || ||||| || Sbjct 32615 AGCTTCTTGAAGTCAAAG--GT-CTTGTCGTCGGTCACAAACTTGGACAGCGCGATGGAC 32559 Query 148830 GCTAGATTGCACACGGCCGTCTCATCCGGGGCGCTGTACTCTACGATCTCGGCGCACAGA 148889 || || |||||||| || |||||| || | ||||||| | | |||| ||| || Sbjct 32558 GCGAGGTTGCACACCGCGACCTCATCGGGCGACGTGTACTCGAGCACCTCGCAGCAGAGG 32499 Query 148890 TTGCTGCATTTGATCACGCCCACGTTCTTTTGATTGCTCTTGCTGTTGCACGCGTCCTTG 148949 ||||| | |||| ||| | ||||| || || ||||| |||||||| ||||||| Sbjct 32498 TTGCTCGAGCGGATCGTGCCGAGGTTCTGCTGGTTCGACTTGCGGTTGCACGAGTCCTTG 32439 Query 148950 TACAGCATGTACGGTCCGCCAGTTTCCACCTGCGTTTCCACTAT---GAACCGATGCAGG 149006 |||||||||||||| ||| || || | ||||| || | || ||||| || | Sbjct 32438 TACAGCATGTACGGCGTGCCCGTCTCGATCTGCGACTCGAGGATCGCGAACCAGAGCTG- 32380 Query 149007 TCCTGCGCGCGCA-CTTGCTGCTCGTAGCGACCCTCCTGCTCGTATAAAGTATACAGCCG 149065 ||||||||| | | | ||| || ||| ||||| ||||||| |||||| Sbjct 32379 --CTGCGCGCGGATCGTCTTGCGCGC-GCGGCCCTCGCGCTCGTACTGGTGGTACAGCGC 32323 Query 149066 CTCGAACGCCTCGCCGTAGCAATCGTCGAGA---CCGGGGCACTTGTGCGGGCACATGAG 149122 ||||||| | ||||| | |||| ||| |||| || || || |||||| | || Sbjct 32322 CTCGAACTCGTCGCCCCACG--TCGTGTAGAGCCCCGGCGC-CTCGTTCGGGCAGAACAG 32266 Query 149123 CGACCACACGCCGTCCGCGTACACGCGCTTCATAAACAGATCGGGCACCCAGAGCGCGTA 149182 |||| |||||| || | ||||||||||| || |||||||| | ||| | |||||| Sbjct 32265 GCTCCACTCGCCGTTGGCCTCGACGCGCTTCATGAAGAGATCGGGGATCCACATCGCGTA 32206 Query 149183 CATGAGGTC--GCGCGCCTTGCAG-TCTTCGGCGCC---CATGTTGCGGCGCAGGTTGAG 149236 | ||| || |||||| ||||| || | | || | | ||| || |||| Sbjct 32205 GAAGAGATCACGCGCGCGGTGCAGCTCGTTGCCGTGGTTCTTCTTGAGGTCCAGGA---- 32150 Query 149237 CACGCTGAATATGTCCGCGTGCCACGGCTCAATGTACACCGCGAGCGCGCCCTTGCGCTT 149296 || | ||| ||||| |||||||||||||| | ||||| ||||| || |||||||||||| Sbjct 32149 -ACTC-GAAGATGTCGGCGTGCCACGGCTCCAGGTACATCGCGAACGAGCCCTTGCGCTT 32092 Query 149297 GCCGCC---CTGGTCGACGTGGCGCACCATGTTGTTAAACACTCGAACCATAGGTTCAAT 149353 |||||| ||||||||||| |||| || ||| ||| || || || | ||| || | | Sbjct 32091 GCCGCCGCCCTGGTCGACGTAGCGCGCCGTGTCGTTGAAGACGCGCAGCATGGGCACGAG 32032 Query 149354 GCCACTGGCAGTGCCGTTAGTAGAGCTAATG--CGACTGCCGCGCGCTCGCACTTTGTGC 149411 ||| | | | |||||| || || ||| ||| | | ||||| | | |||||| Sbjct 32031 GCCGTTCGACGAGCCGTTCGTGCCGCGGATGTACGAGTTCGTCGCGC--GGATGTTGTGC 31974 Query 149412 ACGTTGACGCCGATGCCGCCGCCGTACTTTGAGATGGCCGCGCAGTCGCCGAGCGTCGAG 149471 ||| |||||||||||||||| | |||| |||||| |||||| | |||||| | Sbjct 31973 ACGCTGACGCCGATGCCGCCAGCCCACTTGGAGATGCACGCGCACTGCTTGAGCGTGTCG 31914 Query 149472 TAGATGCCCTCGATGCTGTCGCGCTTCATGGTCAGCAGAAAGCACGAGCACATTTGCGGA 149531 |||||||||||||| |||| |||||||| ||||| |||||||| ||| ||||| Sbjct 31913 TAGATGCCCTCGATCGAGTCGTCCTTCATGGCGAGCAGGAAGCACGACGACAGCTGCGGG 31854 Query 149532 AAACGCGTGCCGGCCGCGAACATGGTGGGGCTGGCGTGTGTAAAATATTTCTGGCTCATC 149591 ||||||| || ||||| || || | ||||| || || | | || ||| Sbjct 31853 CGCGGCGTGCCCGCGTTGAACAGCGTCGGCGTCGCGTGCGTGAAGAAGCTTTGCGACATG 31794 Query 149592 ATCTCGTACGACTCGAGCACGCGGTCCATGTCATCGCCATGGATGCCTATGGCGACGCGC 149651 |||||||| ||||||| | ||| ||||| | |||||||| | |||||| ||| Sbjct 31793 TACTCGTACGTCTCGAGCGCAGCGTCAATGTCGTGCTTGTGGATGCCGACGGCGACACGC 31734 Query 149652 ATCAGCATATGCTGCGGTCGCTCCGCCACTTTGTTTCCAATTTTGAGCAAGTAGCCGTTT 149711 | | ||| |||||||| |||||||| || ||| || | ||| | || || Sbjct 31733 AGAATCATCTGCTGCGGACGCTCCGCGACCTTGCCGCCGACGCGGAGGAGATACGACTTC 31674 Query 149712 TCTAGTGTCTTGTAGCCAAAGTACTTGTAGTCAAAGTCGCGGCCGTGG 149759 || || |||||| |||||||||| | ||| |||||||||||| ||||| Sbjct 31673 TCGAGCGTCTTGAAGCCAAAGTAGTCGTACTCAAAGTCGCGGTCGTGG 31626 >seq4347 Length=93765 Score = 159 bits (176), Expect = 3e-34 Identities = 504/767 (66%), Gaps = 17/767 (2%) Strand=Plus/Plus Query 120354 GTACTCGCCGACGCGTTTCTCAAAAAAGTTTGTTTTGCCCTCCATCGAAATGTTGTTCAT 120413 ||||||||| ||||| ||||| || ||||| || ||||||| | ||| || ||| ||| Sbjct 72435 GTACTCGCCAACGCGCTTCTCGAAGAAGTTGGTCTTGCCCTGGAGCGAGATCATGTCCAT 72494 Query 120414 AAACTCGAACGGGTTGCTCGCGTTAAAGTATTTCGGCTGGCCCAACTGTACG-AGCAGTC 120472 | || |||||||| | | || | || | ||| |||| | | || || | Sbjct 72495 CCAGTCAAACGGGTTCGACACCTTGTAA-ATCTTGGCGACACCAAGCGCGTGGAGGAGGC 72553 Query 120473 GGTCCGCTACAAACTCAATGTACTCGCACATGGACTGCGCGTTCATGCCCAGCAACGCCA 120532 | || || ||||| ||||||| ||||||| | || ||||||||| | || | | | Sbjct 72554 GATCGGCGCAGAACTCGATGTACTGGCACATGAGCGACGAGTTCATGCCGATCAGCTCGA 72613 Query 120533 CCGGCAACGCCGACGTGAAAAACTCCTTCTCAATGTCCACCGCCTCCTTGAACATGGCGA 120592 |||| | || | || |||||||||||||| | || || || | || | Sbjct 72614 CCGGAAGCGAGTCCTGGACGAACTCCTTCTCAATCGCGACGGCATCGCGAATGATCTCAT 72673 Query 120593 GCATA-GTGTGGCCGGGCATCTTGTGTTCGATGCGCGTTCGGTAGTACAGGCACGCAAAG 120651 | || | | ||||| | ||||| | | || | ||| |||||| || ||| Sbjct 72674 GGATGCGCGACTCCGGG-AGCTTGTTGACAA---GCTTGGAGTACAGCAGGCAAGCGAAG 72729 Query 120652 TCCGTGTGCAGGCCCTCGTCGCGCGATATCAGCTCGTTGCTAAACGTCAGGCCGGGCATG 120711 || ||| |||||||| |||||||| || |||||||| || | ||||| |||||| Sbjct 72730 TCGCAGTGGAGGCCCTCATCGCGCGAGATGAGCTCGTTCGAGAAGCTGAGGCCAGGCATG 72789 Query 120712 ATGCCTTTCGTCTTGATGTAGAATATGGCGGCAAAGCTGCCCGAAAAGAACACGCCCTCC 120771 | || | |||||| |||| |||| | || |||||| ||||| | |||||| Sbjct 72790 AGACCACGCTTCTTGAGCCAGAAGATGGAGCAGAACGAGCCCGAGAAGAAAATGCCCTCA 72849 Query 120772 ACGATGGCAAAGGCGACCATGCGCTCGGCCAACGTCGC-CGTCTTGCTGTCGATCCACTT 120830 ||| || || ||||| |||||||| || || | ||| || | | |||| |||||| Sbjct 72850 ACGGCAGCGAACGCGACAATGCGCTCAGCAAAAGCCGCGCGGCGCGA-GTCGCACCACTT 72908 Query 120831 CATGGCCCACTCGGCCTTTTTGCGCACGCACGGCATCCGCTCGAACGCGTTCAGCAGCAT 120890 | ||||| | ||||| || ||||||| || || ||||| ||| || || Sbjct 72909 GAGCGCCCAGTGCGCCTTCTTCTGCACGCATGGAATGGTCTCGATGGCGCGGAGGAGGTG 72968 Query 120891 GTCGCGCTCGCCCTCCTCCGCAATCAGCTGATGGATGAGCAGATTGTACATTTCCGTGTG 120950 || ||| || ||| || | | |||||||| ||||| |||| ||| Sbjct 72969 GTTCTTCTCCGTCTGGTCCTTGATGTACGTGTCAATGAGCAGCGAGTACACCTCCGAGTG 73028 Query 120951 CACGCACTCGATCAGCACTTGCTGGTTG---TAAAAGTACTGCGCCTCCAGCTCGGGCAC 121007 | | ||| || || | |||| | || ||| | ||||||| | | |||| Sbjct 73029 GATGTTCTCAATG-GCGAT--CTGGAAGCCATAGAAGCAACGCGCCTCAGGAACCTGCAC 73085 Query 121008 CGCCC-GCTGCATGTACTCGATAAGGTTAATATTCACGATACTGTCGGCGGCGGCGAAGA 121066 | | | |||| | | ||| | |||| || ||||||| |||| || ||||||| Sbjct 73086 CTCGCTGCTGAAGTTCATCGCGA-GGTTCTCGTTGACGATACCGTCGCTCGCCGCGAAGA 73144 Query 121067 ACGCCAGCACGTGCTTGATAAAGTGTCGCTCGTCGTCCGTGAGCTTG 121113 |||| || ||||||||||||||||| ||||||| ||||||||| ||| Sbjct 73145 ACGCGAGGACGTGCTTGATAAAGTGGCGCTCGTTGTCCGTGAGGTTG 73191 >seq2702 Length=56295 Score = 143 bits (158), Expect = 3e-29 Identities = 150/197 (76%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGCTGCTTGCCC 133523 || ||||| ||||| || ||||| || | |||| |||||||||||||||||| Sbjct 26961 GTCGACTCCTTCTGGATGTTGTAGTCCGAGAGCGTGCGGCCGTCCTCGAGCTGCTTGCCG 26902 Query 133524 GCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTTG 133583 ||| | || || |||||||| || |||||||| || |||||||| |||||| |||||| Sbjct 26901 GCGAAGATCAGGCGCTGCTGATCCGGAGGGATTCCCTCCTTGTCCTGGATCTTCTGCTTG 26842 Query 133584 AGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGTT 133643 | | |||| |||| | ||||| ||||||| |||| || |||||||||||||| Sbjct 26841 ACATTGTCAATGCTGTCCGAAGGCTCGACGTCGAGCGTGATCGTCTTGCCGGTCAGAGTC 26782 Query 133644 TTTACGAAAATCTGCAT 133660 || ||||| |||||||| Sbjct 26781 TTGACGAAGATCTGCAT 26765 >seq1220 Length=9499 Score = 136 bits (150), Expect = 4e-27 Identities = 149/198 (75%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGCTGCTTGCCC 133523 || ||||| ||||| || ||||| || || |||| |||||| ||||||||||| Sbjct 230 GTCGACTCCTTCTGGATGTTGTAGTCCGACAGCGTGCGGCCGTCCTCCAGCTGCTTGCCA 171 Query 133524 GCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTTG 133583 ||| | || || ||||||||||| || || ||||| |||||||| ||||| |||||| Sbjct 170 GCGAAGATCAGGCGCTGCTGGTCCGGCGGAATGCCCTCCTTGTCCTGAATCTTCTGCTTG 111 Query 133584 AGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGTT 133643 | | || | || ||| | ||||||||||||| |||| || ||||| ||||| || Sbjct 110 ACGTTGTCGATCGAGTCCGACGGCTCCACGTCGAGCGTGATCGTCTTGCCCGTCAGCGTC 51 Query 133644 TTTACGAAAATCTGCATG 133661 || ||||| ||||||||| Sbjct 50 TTCACGAAGATCTGCATG 33 >seq6188 Length=1366 Score = 95.1 bits (104), Expect = 1e-14 Identities = 153/215 (71%), Gaps = 4/215 (2%) Strand=Plus/Minus Query 120354 GTACTCGCCGACGCGTTTCTCAAAAAAGTTTGTTTTGCCCTCCATCGAAATGTTGTTCAT 120413 ||||||||| ||||| ||||| || ||||| || ||||||| | ||| || ||| ||| Sbjct 213 GTACTCGCCCACGCGCTTCTCGAAGAAGTTGGTCTTGCCCTGGAGCGAGATCATGTCCAT 154 Query 120414 AAACTCGAACGGGTTGCTCGCGTTAAAGTATTTCGGCTGGCCCAACTG-TACGAGCAGTC 120472 | ||||||||||| | | || || || | ||| |||| || ||| || | Sbjct 153 CCAGTCGAACGGGTTCGACACCTTGTAG-ATCTTGGCGACACCAAGTGCGTGGAGGAGGC 95 Query 120473 GGTCCGCTACA-AACTCAATGTACTCGCACATGGACTGCGCGTTCATGCCCAGCAACGCC 120531 | || || ||| ||||||||||||| ||||||| | || ||||||||| | || | | Sbjct 94 GATCGGC-ACAGAACTCAATGTACTGGCACATGAGCGACGAGTTCATGCCGATCAGCTCG 36 Query 120532 ACCGGCAACGCCGACGTGAAAAACTCCTTCTCAAT 120566 ||||| | || | || |||||||||||||| Sbjct 35 ACCGGAAGCGAGTCCTGGACGAACTCCTTCTCAAT 1 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 483366463502080