Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pythium_20insidiosum_20[genbank_20GCA_5F000764265.1_202014-10-06] 8,992 sequences; 45,609,708 total letters Query= NC_025960.1 Length=148981 Score E Sequences producing significant alignments: (Bits) Value seq3132 291 8e-74 >seq3132 Length=41768 Score = 291 bits (322), Expect = 8e-74 Identities = 1203/1853 (65%), Gaps = 77/1853 (4%) Strand=Plus/Minus Query 146584 GTGCGCAAATAATACATGCCCGTTTTGAGGCCACATCG-CCACGAGTGATTGTGAATCGA 146642 ||||||| || ||||||||||| ||||| || | || ||||| || ||| || || Sbjct 33443 GTGCGCAGGTAGTACATGCCCGTCTTGAGACC-CTTCTTCCACGCGTAGAAGTGCATGGA 33385 Query 146643 AGTCATGATGGCGTACGTCGGCTCCGCCACGAAAAGATTAAACGATTGGCTTTGATCTAT 146702 |||| || | |||||||||||| | | | || | ||| ||||| || || Sbjct 33384 CGTCAGCTTGCTGATCGTCGGCTCCGCGATGTGCACGTTGAGCGACTGGCTCTGGCAGAT 33325 Query 146703 GAAAGCGTTGCGGTCGGCCGCCATCTCAATCATG-CGTTTTGTCTTCATTTCCCAAGCGG 146761 | | ||| ||||||||| ||||| || | || | | || || ||| || ||||| ||| Sbjct 33324 GTAGGCGCCGCGGTCGGCGGCCATGTCGAGCACGGCCTTCTG-CTTGATCTCCCACACGG 33266 Query 146762 TTTTGTACAGCCCCTTAACGCTATCTGGAATACCTTCAATGTTTTGAATAGAGCCCTTGT 146821 | |||||| | |||| ||| || || || | | ||| || | ||||| | || Sbjct 33265 TCTTGTACTTCTCCTTCACGGCGTCCGGGATCACGCGCACGTTCTGCACCGAGCCGTGGT 33206 Query 146822 GCGCAAAAATAGTGTTTCGTATTTCGGGCGTGTAAAGGTTTAGTTTAATGAGGTCATCAA 146881 | || ||| || | |||||||| | | | || | ||||| || | | Sbjct 33205 CGTGGAGGATCTGGTTGCGCACCTCGGGCGTCCAGATGCCGAGCTCGATGAGCTCCTTCA 33146 Query 146882 TTAAATACTGATTGACCA-CTTGAAACTCGCCCGCCAGCACACGTCTGAGATACACATTG 146940 | | |||| || || | | |||| |||||| || ||||| || | | |||| ||| Sbjct 33145 TGAGGTACTTGTTCACGATCGTGAA-CTCGCCAGCGAGCACGCGGCGGTTGTACATGTTG 33087 Query 146941 CTAGTGAAAGGCTCAAAAGACTCATTATTGCCTAATATTTGGGCCGTGGTTGCGGTAGGC 147000 | ||||| ||||| | ||||| || ||||| | || || || || | || || ||| Sbjct 33086 GTCGTGAACGGCTCGATCGACTCGTTGTTGCCGAGGATCTGCGCGGTCGACGCCGTCGGC 33027 Query 147001 ATGTACGCCACCAACAATGAATTTCGCAGACCGTAC-GCACGGATGTTGTCCTTCAAAGT 147059 || ||| | || || || || |||| |||||| || || | | | |||| | | Sbjct 33026 ATCGGCGCGAGCAGCAGCGAGTTGCGCACGCCGTACTGCGCG-ACGCTCGCCTTGAGCGC 32968 Query 147060 TTGCCAGTCCCACAT---CGACGAGGGCGTCACGTTCCACATGTCGTACTGGAGCACTCC 147116 ||||||||| | ||||| ||||| ||| |||||||||| |||||| | || Sbjct 32967 GGCCCAGTCCCAGAGACCCGACGTCGGCGTGACGCCCCACATGTCGAACTGGAAGATGCC 32908 Query 147117 TCGACTGGCGGGACTGCCAGCGAACGTAGTGTAGCTTCCGT-CGCGC--TGCGCCAATTC 147173 || |||| ||||| |||||| |||| || || ||| || | | Sbjct 32907 CTTGCTCACGGG--------CGAACCCTC-GTAGCTGCCGTACGGGCCGTGCTCCCGTGC 32857 Query 147174 ACAGCTT-------GCCTCGAGCGCTCCATAGTATATGGTTTCGGCGATTTGTTTGTTTA 147226 |||| ||||| | || ||| |||| | || ||| ||| | ||||| | Sbjct 32856 G-AGCTCCATCGAGGCCTCCATAGCGCCAAAGTACAGCGTCTCGAAGATGTTCTTGTTGA 32798 Query 147227 GGACGGTCGCTTCTTCGCTCTCGTAAGGCATA-CGCAGAAGCACAAAGGCATCGGCCAAA 147285 | || || || ||||||||| || || || | || || | || || || || | | Sbjct 32797 GCTCGCGGGCCTCGTCGCTCTCG-AACGCGTAGCCCATGAGGATGAACGCGTCCGCGAGA 32739 Query 147286 CCCTGGATACCGACGCCGATAGGTCGATGCTTTTCGTTGCTGCGCTTCGCGCTC-GCTAT 147344 ||||| | |||| |||||| || || || |||||||||| ||| ||| | || Sbjct 32738 CCCTGCACGCCGATGCCGATCGGGCGGTGGCGCAGGTTGCTGCGC-TCGGCCTCGGGGAT 32680 Query 147345 GGGATAGTGGTTGCGATCAATAATCTTGTTGAGGTTACGCACTACAACTTTAGTTATTGT 147404 || |||| |||| || || | |||||| ||||| ||| || || || || || Sbjct 32679 CGGGTAGTAGTTGATGTCGATGACCTTGTTCAGGTTGCGCGTGACGACCTTGGTGATGTC 32620 Query 147405 TTTGAGTTTCTCGAAATCATAAGTCCCGTCTTC-GACACGTACGCATTGGTTCACGGCGA 147463 | ||| |||| ||| ||| | ||| ||| || | ||| || |||| || |||| Sbjct 32619 GTAGAGCTTCTTGAAGTCAAAGGTCTTGTCGTCGGTCACAAAC---TTGG-ACAGCGCGA 32564 Query 147464 TAGACGCCAGATTGCAGACGGCCGTCTCTTC-GGCGTCGCTGTACTGCACGATTTCGGCG 147522 | ||||| || ||||| || || ||| || |||| || |||||| | | ||| | Sbjct 32563 TGGACGCGAGGTTGCACACCGCGACCTCATCGGGCGACG-TGTACTCGAGCACCTCGCAG 32505 Query 147523 CACAGGTTGCTGCATTTTATGACTCCCAAATTTTGCTGATTGCTTTTCCGATTGCACGCG 147582 || |||||||| | || || | || ||||| || || || ||||||| | Sbjct 32504 CAGAGGTTGCTCGAGCGGATCGTGCCGAGGTTCTGCTGGTTCGACTTGCGGTTGCACGAG 32445 Query 147583 TCTTTGAAGAGCATGTACGGTCCGCCGGTCTCGACTTGCGTTTCAACGAT---AAACCTA 147639 || ||| | ||||||||||| ||| ||||||| |||| || | ||| |||| Sbjct 32444 TCCTTGTACAGCATGTACGGCGTGCCCGTCTCGATCTGCGACTCGAGGATCGCGAACC-- 32387 Query 147640 TGCAGGTCCTGCGCTCGCACCCGCTGCCGATAGCGGCCCTCGTTTTCGTACCGCTCGTAC 147699 || | |||||| || | | || || |||||||||| |||||| | | |||| Sbjct 32386 -AGAGCTGCTGCGCGCGGATCGTCTTGCGCGCGCGGCCCTCGCGCTCGTACTGGTGGTAC 32328 Query 147700 AACCGCTCAAACTCGTCGCCGTAGCAATCG-GCA-AGGCCGGGACACTGATGCGGACACA 147757 | | ||| ||||||||||| | ||| | | || || || || | ||| || | Sbjct 32327 AGCGCCTCGAACTCGTCGCCCCA--CGTCGTGTAGAGCCCCGGCGCCTCGTTCGGGCAGA 32270 Query 147758 TCAGCGACCACATGTCGTCCGCGTTAACGCGTCGCATAAACAGATCCGGCACCCACAGCG 147817 ||| |||| | ||| || | ||||| ||| || ||||| || | ||||| || Sbjct 32269 ACAGGCTCCACTCGCCGTTGGCCTCGACGCGCTTCATGAAGAGATCGGGGATCCACATCG 32210 Query 147818 CGTACATAAGAT--CGCGCGCTTTGCAATCCTCGGCGCCCATGTTGCGTTTCAAAT-TAA 147874 |||| | |||| ||||||| |||| |||| ||| ||| || | | | Sbjct 32209 CGTAGAAGAGATCACGCGCGCGGTGCA--GCTCGTTGCCGTGGTTCTTCTTGAGGTCCAG 32152 Query 147875 GCACGCTATAGATGTCGGCGTGCCAGGGTTCAATGTAGACGGCCAGCGCACCTTTACGCT 147934 | || | | |||||||||||||||| || || | ||| | || | || || || |||| Sbjct 32151 GAACTCGA-AGATGTCGGCGTGCCACGGCTCCAGGTACATCGCGAACGAGCCCTTGCGCT 32093 Query 147935 T---TCCGCCCTGGTCGACATGGCGCACCATGTTGTTAAACACGCGCACCATGGGTTCCA 147991 | |||||||||||||| | |||| || ||| ||| || ||||||| |||||| | | Sbjct 32092 TGCCGCCGCCCTGGTCGACGTAGCGCGCCGTGTCGTTGAAGACGCGCAGCATGGGCACGA 32033 Query 147992 GGCCGCTCGCAGTGCCGTTGGTGGAATTGAT---CTTGCT-GCCGCGGGCTCGCACTTCG 148047 ||||| ||| | |||||| ||| ||| | | | | |||| || | | | Sbjct 32032 GGCCGTTCGACGAGCCGTTCGTGCCGCGGATGTACGAGTTCGTCGCG----CGGATGTTG 31977 Query 148048 TGCACGTTAACGCCAATGCCGCCGCCGTACTTTGATATGGCAGCGCAATCGCCCAA---T 148104 |||||| | ||||| |||||||| | |||| || ||| ||||| | || | | Sbjct 31976 TGCACGCTGACGCCGATGCCGCCAGCCCACTTGGAGATGCACGCGCACT-GCTTGAGCGT 31918 Query 148105 GTCGTGTAGATGCCGTCGATGCTGTCGTTTTTGACGCCAAGCAAAAAACACGAACACATT 148164 ||| ||||||||| ||||| ||||| || | | | |||| || ||||| ||| Sbjct 31917 GTC--GTAGATGCCCTCGATCGAGTCGTCCTTCATGGCGAGCAGGAAGCACGACGACAGC 31860 Query 148165 TGCGGAATCCGCGTTCCCGCCGAGAAAAGGGTGGGACTCGCGTGCGTAAACAATTTTTGA 148224 ||||| | |||| ||||| ||| || || || |||||||||| || || |||| Sbjct 31859 TGCGGGCGCGGCGTGCCCGCGTTGAACAGCGTCGGCGTCGCGTGCGTGAAGAAGCTTTGC 31800 Query 148225 CTCAT-CATGCGATACGTCTCAATAGCGTCTTCGATGTCGTCGCCGTGAATGCCCAGCGC 148283 ||| | || |||||||| | || | || ||||||| ||| ||||| | || Sbjct 31799 GACATGTACTCG-TACGTCTCGAGCGCAGCGTCAATGTCGTGCTTGTGGATGCCGACGGC 31741 Query 148284 GACGCGCATGAGCATGTGCTGTGGTCGTTCGGCAACTTGATTGTTGATCTTGAGAAGATA 148343 ||| |||| | ||| ||||| || || || || || | | || ||| ||||| Sbjct 31740 GACACGCAGAATCATCTGCTGCGGACGCTCCGCGACCTTGCCGCCGACGCGGAGGAGATA 31681 Query 148344 TCCATTTTCGAGGGTTTTGTAACCAAAGTACTTGTAATCAAAATCTAGCTCGT 148396 || ||||| || ||| | |||||||| | ||| ||||| || | |||| Sbjct 31680 CGACTTCTCGAGCGTCTTGAAGCCAAAGTAGTCGTACTCAAAGTCGCGGTCGT 31628 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 476557628901120