Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pythium_20insidiosum_20[genbank_20GCA_5F000764265.1_202014-10-06] 8,992 sequences; 45,609,708 total letters Query= NC_026922.1 Length=157977 Score E Sequences producing significant alignments: (Bits) Value seq1220 131 2e-25 seq2702 123 3e-23 seq3132 102 8e-17 seq7397 86.0 6e-12 >seq1220 Length=9499 Score = 131 bits (144), Expect = 2e-25 Identities = 162/219 (74%), Gaps = 2/219 (1%) Strand=Plus/Minus Query 134496 AGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTC-GCCAACGGTGTG 134554 || |||| ||| ||||| ||||| || ||||| || ||||||||||| | || || || | Sbjct 251 AGACGCAGCACCAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCCGACAGCG-TGCG 193 Query 134555 AGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTC 134614 ||| || ||||| ||||| || || |||| |||||||| || ||||| ||||| || Sbjct 192 GCCGTCCTCCAGCTGCTTGCCAGCGAAGATCAGGCGCTGCTGGTCCGGCGGAATGCCCTC 133 Query 134615 TTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGT 134674 || || ||||| || || ||||| ||| | | ||| |||| ||||||||||| || Sbjct 132 CTTGTCCTGAATCTTCTGCTTGACGTTGTCGATCGAGTCCGACGGCTCCACGTCGAGCGT 73 Query 134675 AATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 || || || || || | || || ||||| || ||||| Sbjct 72 GATCGTCTTGCCCGTCAGCGTCTTCACGAAGATCTGCAT 34 >seq2702 Length=56295 Score = 123 bits (136), Expect = 3e-23 Identities = 162/222 (73%), Gaps = 2/222 (1%) Strand=Plus/Minus Query 134496 AGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGA 134555 || || | ||| ||||| ||||| || ||||| || ||||||||||| | ||| | Sbjct 26982 AGGCGGAGCACCAGGTGGAGCGTCGACTCCTTCTGGATGTTGTAGTCCGAGAGCGTGCGG 26923 Query 134556 GAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCT 134615 ||| |||||||| ||||| || || |||| ||||||||||| || || || || || Sbjct 26922 CCGTCCTCGAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGATCCGGAGGGATTCCCTCC 26863 Query 134616 TTTTCTTGAATTTTTTGTTTGACCGCGTCCAATG-TGTCGGACGATTCCACGTCGAGAGT 134674 || || || || || || ||||| || ||||| |||| || | || |||||||| || Sbjct 26862 TTGTCCTGGATCTTCTGCTTGACATTGT-CAATGCTGTCCGAAGGCTCGACGTCGAGCGT 26804 Query 134675 AATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCATTTT 134716 || || || ||||| | ||| || ||||| || ||||| || Sbjct 26803 GATCGTCTTGCCGGTCAGAGTCTTGACGAAGATCTGCATCTT 26762 >seq3132 Length=41768 Score = 102 bits (112), Expect = 8e-17 Identities = 911/1448 (63%), Gaps = 67/1448 (5%) Strand=Plus/Plus Query 7551 CGCGGAACGAATTCAACACATGCTGTTGCGCGTGGCGGTGGGCATTCACGGCGAAGACAT 7610 |||||| || || || ||| | |||| || || || ||||| ||| | ||||| Sbjct 31707 CGCGGAGCGTCCGCAGCAGATGATTCTGCGTGTCGCCGTCGGCATCCACAAGCACGACAT 31766 Query 7611 TGACGCCGCCTTGGAAACGTACCAAATGATGTCTTTGAAACAGTTT----ACGCACGCTT 7666 |||||| || | || |||||| | ||||| | || || || |||||||| Sbjct 31767 TGACGCTGCGCTCGAGACGTACGAGTACATGTC---GCAA-AGCTTCTTCACGCACGCGA 31822 Query 7667 CGCCCACCATGTTTGCCGCGGGCACAAACGCGCCT-CAATTGTCCTCGTGTTTTTTGCTA 7725 |||| || |||| ||||||||| |||||| || |||| ||||| || |||| Sbjct 31823 CGCCGACGCTGTTCAACGCGGGCACGC-CGCGCCCGCAGCTGTCGTCGTGCTTCCTGCTC 31881 Query 7726 ACCATGCGCGAAGACAGCATCGACGGCATTTACAACACGCTGCGCGATTGCGCCAATATT 7785 ||||| || ||| ||||| ||||| ||| ||||||| | ||||| || Sbjct 31882 GCCATGAAGGACGACTCGATCGAGGGCATCTACGACACGCTCAAGCAGTGCGCGTGCATC 31941 Query 7786 TCCAAATACGGCGGCGGAATAGGTCTGAACGTAAACGACGTGCGCGCCAACGGTAGCCG- 7844 ||||| | | ||||| || || | | ||| || || | ||||| | | | || Sbjct 31942 TCCAAGTGGGCTGGCGGCATCGGCGTCAGCGTGCACAACATCCGCGCGAC--GAACTCGT 31999 Query 7845 -CATCGTGTCCACCAACGGAAAAGCCAGCGGTTTAGAGCCCATGTTGCGCGTGTTCAATA 7903 |||| ||| ||||| | | ||| | | ||||||| ||||||| ||||| Sbjct 32000 ACATCCGCGGCACGAACGGCTCGTCGAACGGCCTCGTGCCCATGCTGCGCGTCTTCAACG 32059 Query 7904 ACGCGGTGCGACATGTAGACCAGGGGGGA---AAGCGCAAAGGCGCCGCTGCCATCTATT 7960 || ||| ||| | || |||||||| || |||||||| ||| | || || || Sbjct 32060 ACACGGCGCGCTACGTCGACCAGGGCGGCGGCAAGCGCAAGGGCTCGTTCGCGATGTACC 32119 Query 7961 TGGAGCCGTGGCACGCGGACATTTACGCAGTGCTAAATCTGC-GTCGCAACATGGGTTGC 8019 |||||||||||||||| ||||| | || | || | || | | | || || | Sbjct 32120 TGGAGCCGTGGCACGCCGACATCTTCGAGTTCCTGGACCTCAAGAAGAACCACGG----C 32175 Query 8020 GAAGA-CAGCAAAGCGCGCG--ATCTATTCTTCGGATTGTGGGTGCCCGATCTGTTTATG 8076 | || | ||| ||||||| |||| |||| || ||||| | |||||||| || ||| Sbjct 32176 AACGAGCTGCACCGCGCGCGTGATCTCTTCTACGCGATGTGGATCCCCGATCTCTTCATG 32235 Query 8077 AGGCGCGTTCATTTCGACGCACAATGGTCGCTCATGTGCCCCGATCGTTGCCCTTTAT-- 8134 | |||||| | | ||| | ||| || | ||||| || || || | Sbjct 32236 AAGCGCGTCGAGGCCAACGGCGAGTGGAGCCTGTTCTGCCC-GAACGAGGCGCCGGGGCT 32294 Query 8135 -TAAAAAACGTTTACGGTTCAA--AATTTGAACAATTGTACAAACAATACGAACACGACG 8191 || | |||| || | | | || || ||||| | || ||||| | ||| | Sbjct 32295 CTACACGACGT----GGGGCGACGAGTTCGAGGCGCTGTACCACCAGTACGAGCGCGAGG 32350 Query 8192 GCGCGTACGTGCGGCAAGTGAAAGCGCGCG-ACCTGCACCG---CGCCATTATCGAATGT 8247 || || || ||| |||| | |||||| | | || | | ||| || |||| | Sbjct 32351 GC-CG--CGCGCG-CAAGACGATCCGCGCGCAGCAGCTCTGGTTCGCGATCCTCGAGTCG 32406 Query 8248 CAAAACGAAACCGGTATGCCGTACATGCTGTACAAAGACGCTTGCAACGCCAAAAGCAAT 8307 || | ||| || || | |||||||||||||||||| ||| | |||||| ||| || Sbjct 32407 CAGATCGAGACGGGCACGCCGTACATGCTGTACAAGGACTCGTGCAACCGCAAGTCGAAC 32466 Query 8308 CAAAGCAACGTGGGCACCATTTGTTGCAGCAATCTGTGCGCTGAAATTGTACAGTACAGC 8367 || ||| | ||||| || | | ||||| || ||| || | | |||||| Sbjct 32467 CAGCAGAACCTCGGCACGATCCGCTCGAGCAACCTCTGCTGCGAGGTGCTCGAGTACACG 32526 Query 8368 GCGCCCGACGAAGTGGCCGTTTGCAATCTAGCGTCGGTG----TGTTTAAACGCGTTCGT 8423 ||||||| || || || || ||||| || ||||| | ||| || ||| || Sbjct 32527 TCGCCCGATGAGGTCGCGGTGTGCAACCTCGCGTCCATCGCGCTGTCCAA----GTTTGT 32582 Query 8424 TGATCGACGCTCAAACACTTACGACTTT--GAA-CAATTGAAAAACGCCGTGCAAGTGAC 8480 || ||||| | || || ||||| ||| | | | | | || | || || Sbjct 32583 -GACCGACGACAAGACCTTT--GACTTCAAGAAGCTCTACGACATCACCAAGGTCGTCAC 32639 Query 8481 GGTACGCAATTTAGATCGCATCATTGATGTCAATTTTTATCCCTTGGAAGAAGC-GCGCG 8539 | ||||| | | |||| || |||| | || || | || || | ||| Sbjct 32640 G---CGCAACCTGAACAAGGTCATCGACATCAACTACTACCCGATCCCCGAGGCCGAGCG 32696 Query 8540 TATCGAACATGCGCCACAGACCCGTTGGCGTGGGCGTGCAAGGTCTGGCCGACGCGTTTG 8599 | | ||| |||||||| | || | ||| | |||||||| ||||| || |||||||| Sbjct 32697 CAGC-AACCTGCGCCACCGCCCGATCGGCATCGGCGTGCAGGGTCTCGCGGACGCGTTCA 32755 Query 8600 CCATGTTGCGCCTCCCCTACGAAAGCCAAGAAGCGCGCATGCTCAACATAAAAATAGCGG 8659 | | || || | | | ||| ||| | || || ||| |||||||| || || | Sbjct 32756 TCCTCATGGGCTACGCGTTCGAGAGCGACGAGGCCCGCGAGCTCAACAAGAACATCTTCG 32815 Query 8660 AAACGGTGTATTACGGCGCATTAGAAGCCA-GCTGTCAACTTGCCCGAGAATTGGGCACG 8718 | ||| |||| | ||||| | || ||| | || | || || || || ||| || Sbjct 32816 AGACGCTGTACTTTGGCGCTATGGAGGCCTCGATGG-AGCTCGCACGGGAGCACGGCCCG 32874 Query 8719 TACGAATCGTACGCGGGCAGCCCTGCCAGCCGCGGAATATTGCAATACGACATGTGGAAT 8778 |||| |||| ||| || | ||| || || || || | |||||||||| Sbjct 32875 TACGGCAGCTACGAGGGTTCGCCCGTGAGCAAGGGCATCTTCCAGTTCGACATGTGGGGC 32934 Query 8779 GTCACGCCCACCTC---TTTGTGGAATTGGAGCGATTTGAAACGCAAAATTGCTCAATTC 8835 |||||||| || || | | ||| | ||| || | || | | || || | | Sbjct 32935 GTCACGCCGACGTCGGGTCTCTGGGACTGGGCCGCGCTCAAGGCGAGCGTCGCGCAGTAC 32994 Query 8836 GGTTTGCGCAATTCGCTGTTGGTGGCTTACATGCCCACCGCCACGACTGCTCAAATAATG 8895 || ||||||| |||||| || | || ||||| || || |||| || || || | Sbjct 32995 GGCGTGCGCAACTCGCTGCTGCTCGCGCCGATGCCGACGGCGTCGACCGCGCAGATCCTC 33054 Query 8896 GGAAACAACGAATCCTTTGAGCCGTTCACCAACAACGTGTACGTGAGACGAGTGTTGGCC 8955 || |||||||| || | ||||||||||| | |||| ||||| | || ||| | || Sbjct 33055 GGCAACAACGAGTCGATCGAGCCGTTCACGACCAACATGTACAACCGCCGCGTGCTCGCT 33114 Query 8956 GGCGATTT 8963 ||||| || Sbjct 33115 GGCGAGTT 33122 >seq7397 Length=9624 Score = 86.0 bits (94), Expect = 6e-12 Identities = 89/117 (76%), Gaps = 0/117 (0%) Strand=Plus/Plus Query 134496 AGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGA 134555 || || | ||| ||||| ||||| || ||||| || ||||||||||| || |||| | Sbjct 4202 AGGCGGAGCACCAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCCGAAAGGGTGCGG 4261 Query 134556 GAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCT 134612 ||| |||||||| ||||| || || |||| ||||||||||| || || || ||| Sbjct 4262 CCGTCCTCGAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGATCCGGAGGGATTCCT 4318 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 505341593219840