Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pythium_20insidiosum_20[genbank_20GCA_5F000764265.1_202014-10-06] 8,992 sequences; 45,609,708 total letters Query= NC_027778.1 Length=124244 Score E Sequences producing significant alignments: (Bits) Value seq5045 95.1 1e-14 seq2601 95.1 1e-14 seq4347 89.7 4e-13 >seq5045 Length=16147 Score = 95.1 bits (104), Expect = 1e-14 Identities = 129/180 (72%), Gaps = 0/180 (0%) Strand=Plus/Minus Query 41004 CGACGTATAATATTGTGCGCGTGGAACCCAACGGACGTACATTTGATGGCATTGCCACCT 41063 || || || || ||| || |||||||| ||||| | | |||||| |||| || Sbjct 9589 CGGCGCATCATCATGTCGGCATGGAACCCTGCGGACCTCAAGGAGATGGCGCTGCCGCCG 9530 Query 41064 TGTCATTTGTTATGTCAGTTTTACGTTTGCAATGGTGAACTGTCATGTCAATTGTATCAA 41123 || || |||| || |||||||||||| |||||||| || || ||||| |||| ||| Sbjct 9529 TGCCACATGTTCTGCCAGTTTTACGTTGCGAATGGTGAGCTCTCCTGTCAGATGTACCAA 9470 Query 41124 AGATCAGGTGACATGGGACTAGGGGTCCCGTTTAACATAGCGAGTTATGCTCTGCTCACG 41183 | |||| || ||||| || || || || || ||||| ||||| || || ||| | ||| Sbjct 9469 CGCTCAGCAGATATGGGTCTCGGCGTGCCATTCAACATCGCGAGCTACGCGCTGTTGACG 9410 >seq2601 Length=2056 Score = 95.1 bits (104), Expect = 1e-14 Identities = 129/180 (72%), Gaps = 0/180 (0%) Strand=Plus/Minus Query 41004 CGACGTATAATATTGTGCGCGTGGAACCCAACGGACGTACATTTGATGGCATTGCCACCT 41063 || || || || ||| || |||||||| ||||| | | |||||| |||| || Sbjct 1216 CGGCGCATCATCATGTCGGCATGGAACCCTGCGGACCTCAAGGAGATGGCGCTGCCGCCG 1157 Query 41064 TGTCATTTGTTATGTCAGTTTTACGTTTGCAATGGTGAACTGTCATGTCAATTGTATCAA 41123 || || |||| || |||||||||||| |||||||| || || ||||| |||| ||| Sbjct 1156 TGCCACATGTTCTGCCAGTTTTACGTTGCGAATGGTGAGCTCTCCTGTCAGATGTACCAA 1097 Query 41124 AGATCAGGTGACATGGGACTAGGGGTCCCGTTTAACATAGCGAGTTATGCTCTGCTCACG 41183 | |||| || ||||| || || || || || ||||| ||||| || || ||| | ||| Sbjct 1096 CGCTCAGCAGATATGGGTCTCGGCGTGCCATTCAACATCGCGAGCTACGCGCTGTTGACG 1037 >seq4347 Length=93765 Score = 89.7 bits (98), Expect = 4e-13 Identities = 286/435 (66%), Gaps = 9/435 (2%) Strand=Plus/Minus Query 43856 GCGTTTTTTGCTGCGAGCGACGGGATAGTCAATGAAAATTTGGTTAGTCGGTTTGCGCAA 43915 ||||| || || ||||||||||| || ||||| || || | | | | || ||| Sbjct 73148 GCGTTCTTCGCGGCGAGCGACGGTATCGTCAACGAGAACCTCGCGA-TGAACTTCAGCAG 73090 Query 43916 -GAAGTTCAATTACCAGAAGCACGATGTTTTTATGGGTTTCAAATTGCCATAGAAAATAT 43974 || || || | || || || || || || ||||| || || || ||||| || || || Sbjct 73089 CGAGGTGCAGGTTCCTGAGGCGCGTTGCTTCTATGGCTTCCAGATCGCCATTGAGAACAT 73030 Query 43975 TCATTCGGAAATGTACAGTCTTCTGATAGATACGTACATCAAAGATGGGCACGAGAAGCA 44034 || ||||| ||||| || || || || ||||||||||| || | |||||| | Sbjct 73029 CCACTCGGAGGTGTACTCGCTGCTCATTGACACGTACATCAAGGACCAGACGGAGAAGAA 72970 Query 44035 TCGATTGTTTAATGCGATAGAAACAGTACC-TGCGATTAAACATAAAGCAGACTGGGCCC 44093 | | | || || || || | || |||| | | | || || ||||||| | Sbjct 72969 CCACCTCCTCCGCGCCATCGAGACCATTCCATGCGTGCAGA-AGAAGGCGCACTGGGCGC 72911 Query 44094 TTAAATGGATAAATTCAAAT---GATTCTTTTGGAGAACGACTTGTCGCGTTTGCAGTTG 44150 | || ||| | || | |||||| || || |||||||||| || | | Sbjct 72910 TCAAGTGGTGCGACTCGCGCCGCGCGGCTTTTGCTGAGCGCATTGTCGCGTTCGCTGCCG 72851 Query 44151 TGGAAGGCATTTTCTTTTCAGGATCGTT-TGCGGCCATATTTTGGTTAAAGAAACGAGGT 44209 | || ||||||||||| || || ||||| ||| |||| || ||| | ||||| || ||| Sbjct 72850 TTGAGGGCATTTTCTTCTCGGGCTCGTTCTGC-TCCATCTTCTGGCTCAAGAAGCGTGGT 72792 Query 44210 TTGATGCCTGGGTTGACGTTTTCAAATGAGTTAATAAGTCGTGATGAAGGCTTACATTGC 44269 | |||||||| | | || || || ||| | || || ||||| ||| | || ||| Sbjct 72791 CTCATGCCTGGCCTCAGCTTCTCGAACGAGCTCATCTCGCGCGATGAGGGCCTCCACTGC 72732 Query 44270 GATTTTGCTTGCTTG 44284 || || |||||| || Sbjct 72731 GACTTCGCTTGCCTG 72717 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397412442796960