Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pythium_20insidiosum_20[genbank_20GCA_5F000764265.1_202014-10-06] 8,992 sequences; 45,609,708 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq3132 215 6e-51 seq4347 125 9e-24 seq7148 91.5 2e-13 >seq3132 Length=41768 Score = 215 bits (238), Expect = 6e-51 Identities = 574/861 (67%), Gaps = 17/861 (2%) Strand=Plus/Minus Query 111317 ATCGTCCCCAAATTCTTTTGGTTACTCTTCTTGTTGCACGCATCCTTGTAGAGCATGTAG 111376 ||||| || | |||| ||||| ||| |||||||| |||||||| |||||||| Sbjct 32486 ATCGTGCCGAGGTTCTGCTGGTTCGACTTGCGGTTGCACGAGTCCTTGTACAGCATGTAC 32427 Query 111377 GGCGTCCCCGTCTCCGTCTGTGATTTGAGAATAGCCTTCCAAACAT-CGGCG-GCTGGTA 111434 ||||| |||||||| |||| || | ||| || || ||| | | | ||| || | | Sbjct 32426 GGCGTGCCCGTCTCGATCTGCGACTCGAGGATCGCGAACCAGAGCTGCTGCGCGCGGATC 32367 Query 111435 CAATGGCGTTGGCCCGTCCCTCCGCCTCGTACTTTGTGTAGAGGGCTTCAAACTCCTCAC 111494 | ||| || || ||||| |||||||| ||| || || || ||||| || | Sbjct 32366 GTCTTGCGC--GCGCGGCCCTCGCGCTCGTACTGGTGGTACAGCGCCTCGAACTCGTCGC 32309 Query 111495 CCACCG-CGTCGGAGAGACCTGGTGCCTTGTCTGGACAGAAAAGAGACCATTGACCACCT 111553 || || ||| | |||| || || |||| || || ||||| || ||| | || Sbjct 32308 CCCACGTCGT-GTAGAGCCCCGGCGCCTCGTTCGGGCAGAACAGGCTCCACTCGCCGTTG 32250 Query 111554 TCCTCAACCCGCTTCATGAAAAGGTCTGGAATCCACAGGGATGAAAAGAGATCTCTA-CA 111612 |||| || ||||||||||| || || || ||||||| | | |||||||| | | Sbjct 32249 GCCTCGACGCGCTTCATGAAGAGATCGGGGATCCACATCGCGTAGAAGAGATCACGCGCG 32190 Query 111613 CCGAGCCTCTTCGTCACCTTGGTTGAGTCGTAAC-TCAAGGAACTCCATGATATCCGCGT 111671 | | || || ||| || ||||| || | | || |||||||| | ||| || |||| Sbjct 32189 CGGTGCAGCT-CGTTGCCGTGGTTCT-TCTTGAGGTCCAGGAACTCGAAGATGTCGGCGT 32132 Query 111672 GCCATGGCTCAAGATAGACTGCGATAGATCCCTTTCGAC-GCC--CAGCTTGATTTACAT 111728 |||| ||||| || || | |||| || ||||| || ||| | | || | || | Sbjct 32131 GCCACGGCTCCAGGTACATCGCGAACGAGCCCTTGCGCTTGCCGCCGCCCTGGTCGACGT 32072 Query 111729 AGCGCGCTGTGGCGTTAAATACGCGAAGCATTGGAATAATACCATCTGATTGACCATTTG 111788 ||||||| ||| |||| || ||||| ||||| || | | || | || || || | Sbjct 32071 AGCGCGCCGTGTCGTTGAAGACGCGCAGCATGGGCACGAGGCCGTTCGACGAGCCGTTCG 32012 Query 111789 TCCCCCGAAT--ACGAGATTTATTGGCTCTCACATCATGGATGTGCATCCCAATACCCCC 111846 | || || || ||||| || | || | | | || | | | || || || || Sbjct 32011 TGCCGCGGATGTACGAG--TTCGTCGCGCGGATGTTGTGCACGCTGACGCCGATGCCGCC 31954 Query 111847 AGCCCACTTTGAGATTTGCGCACACTCCGTAAGAGTTCCATAGATACCGTTGATTGAGTC 111906 ||||||||| ||||| ||| |||| | | || || | ||||| || | ||| ||||| Sbjct 31953 AGCCCACTTGGAGATGCACGCGCACTGCTTGAGCGTGTCGTAGATGCCCTCGATCGAGTC 31894 Query 111907 CTCCTTGTTGGCGATAAGGAAGCAACTGGACATCTGCGGTCTTGGTGTACCAGCATTGAA 111966 ||||| |||||| |||||||| |||| |||||| | || || || || ||||| Sbjct 31893 GTCCTTCATGGCGAGCAGGAAGCACGACGACAGCTGCGGGCGCGGCGTGCCCGCGTTGAA 31834 Query 111967 GAGGGTTGGTGTTGCGTGAATGAACATACCTTGGGACATCTTGTCGTATGTCTCCAAGAC 112026 || || || || ||||| |||| | | ||| ||||| | ||||| ||||| | | Sbjct 31833 CAGCGTCGGCGTCGCGTGCGTGAAGAAGCTTTGCGACATGTACTCGTACGTCTCGAGCGC 31774 Query 112027 AGAATCAATGTCTTCCCCGTGGATGCCGATTGCGACCCGCATGAACATGTACTGTGGGGT 112086 || |||||||| | | ||||||||||| ||||| |||| | ||| | ||| || Sbjct 31773 AGCGTCAATGTCGTGCTTGTGGATGCCGACGGCGACACGCAGAATCATCTGCTGCGGACG 31714 Query 112087 TTCCATGAGGATGCCATCGAGCCGTTGAAGATAGCTCTTCTCAAGGGTTTTGAGACCAAA 112146 ||| || |||| ||| || | ||||| |||||| || || |||| ||||| Sbjct 31713 CTCCGCGACCTTGCCGCCGACGCGGAGGAGATACGACTTCTCGAGCGTCTTGAAGCCAAA 31654 Query 112147 GTAACCAAAATCATAGTCCCG 112167 ||| | | ||| |||| || Sbjct 31653 GTAGTCGTACTCAAAGTCGCG 31633 >seq4347 Length=93765 Score = 125 bits (138), Expect = 9e-24 Identities = 382/579 (66%), Gaps = 20/579 (3%) Strand=Plus/Plus Query 122371 TAGTCCCCGACCCGCTTCTCAAAGAAGTTGGTCTTCCCATCAAGGCTAATGTTTTCCATA 122430 || || || || |||||||| |||||||||||||| || | || || | ||||| Sbjct 72436 TACTCGCCAACGCGCTTCTCGAAGAAGTTGGTCTTGCCCTGGAGCGAGATCATGTCCATC 72495 Query 122431 AAGTCAAATGGATTCTTCGCGTTCCAAATGGGTGGC-ACCCCAACTTGTTTGAGGAGACG 122489 ||||||| || ||| | | || |||| |||| || |||| | |||||| || Sbjct 72496 CAGTCAAACGGGTTCGACACCTTGTAAATCT-TGGCGACACCAAGCGCGTGGAGGAGGCG 72554 Query 122490 ATCCGA-CACATACTCAATGTACTCGGACATCTTCTCAGAGTTCATACCGATGAGGTTAC 122548 ||| | || | |||| ||||||| | |||| | |||||||| ||||| || | Sbjct 72555 ATCGGCGCAGA-ACTCGATGTACTGGCACATGAGCGACGAGTTCATGCCGATCAGCTCGA 72613 Query 122549 ATGGGAGTGCGTCCAAGATGAACCCTTTCTCAATCTCAACCGCCTCTTTCACGATGGCGT 122608 || || | |||| || |||| | ||||||||| | || || || | ||| | | Sbjct 72614 CCGGAAGCGAGTCCTGGACGAACTCCTTCTCAATCGCGACGGCATCGCGAATGATCTCAT 72673 Query 122609 GGATAGT----TTCGGTAGTGGGTCTATTACGCAAAGTCTTGAAGAGCTCCACG---GCA 122661 |||| | ||| || || | || ||| |||| || | || | || Sbjct 72674 GGATGCGCGACTCCGGGAGCTTGT---TGAC---AAG-CTTGGAGTACAGCAGGCAAGCG 72726 Query 122662 AACTCCTGGTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGACCTGGC 122721 || || |||||| |||||||| || || || || || || ||||||| || || ||| Sbjct 72727 AAGTCGCAGTGGAGGCCCTCATCGCGCGAGATGAGCTCGTTCGAGAAGCTGAGGCCAGGC 72786 Query 122722 ATGAGACCCCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATACCC 122781 |||||||| |||||||| | ||| | || | |||||| || || |||||||| || ||| Sbjct 72787 ATGAGACCACGCTTCTTGAGCCAGAAGATGGAGCAGAACGAGCCCGAGAAGAAAATGCCC 72846 Query 122782 TCCACACACGCAAACGCAAAAAGGCGTTCGGC-GAAGGAGCGAGACTTTGCATCAAACCA 122840 || || || ||||| | || ||| || || ||| ||| | | | || |||| Sbjct 72847 TCAACGGCAGCGAACGCGACAATGCGCTCAGCAAAAGCCGCGCGGC-GCGAGTCGCACCA 72905 Query 122841 TTTCATTGCCCATTTCGCCTTCTTCTCAATACATGGTACAGTTTGGATGGCTTCAAATAA 122900 || | ||||| | ||||||||||| | ||||| | || | |||||| | | Sbjct 72906 CTTGAGCGCCCAGTGCGCCTTCTTCTGCACGCATGGAATGGTCTCGATGGCGCGGAGGAG 72965 Query 122901 CTGCTTCTTTTCAGATCCATCCTTAATGTATTTGTCAAT 122939 || ||||| || | ||||| ||||| ||||||| Sbjct 72966 GTGGTTCTTCTCCGTCTGGTCCTTGATGTACGTGTCAAT 73004 >seq7148 Length=46129 Score = 91.5 bits (100), Expect = 2e-13 Identities = 267/405 (66%), Gaps = 26/405 (6%) Strand=Plus/Minus Query 182477 GAGGAGACTGGGCCAGAAGTAGTGGATCATATTTAGGATGAGACCCTTGATGTGAGAACC 182536 || ||||| |||||||||| || || | ||| | || ||||||||||||||| || Sbjct 11382 GAAGAGAC--GGCCAGAAGTGATGAATAAAATTGATGACCAGACCCTTGATGTGACTGCC 11325 Query 182537 ATCATTATCGGCATCTGTCATAATCATAAGACGACCATAGCGAAGTTCAGAAACATCTTG 182596 |||| ||| ||||| ||| ||||| || | || || || || || |||| Sbjct 11324 GTCATGATCCTGATCTGCCATGATCATCAGGTGCCCGTAACGTAG-------AC-TCTTC 11273 Query 182597 GTAGTCTTTTCCTTGTTGA--------AGACCAAGGATCTTCT-TGAGATCATTGAA-CT 182646 || | || | ||||| | || || | ||||||| | || || |||| || Sbjct 11272 GTTGACTCATACTTGTGGCCGTGCTTGAGTCCCAAGATCTTCACTAAGTTC--TGAATCT 11215 Query 182647 CCTGGTTTGATGTAAGCTGTGCCACCGAAGCG--TCCCGAACATTCTTACATTTACCGCG 182704 ||| ||| ||| || | | || || || ||||||||| ||| || Sbjct 11214 CCTCGTTCTTCATAATTTGAG--AATGACTCGCTTCACGAACATTCAGTAGTTTGCCCTT 11157 Query 182705 AAGTGGGAACACACCGTAGTGATCACGACCAACGACAGAGAGACCCGCAACCGCGAGGGT 182764 ||||| ||||||||||| | ||||| ||||| || ||||| || | |||| ||| Sbjct 11156 CAGTGGAAACACACCGTAATAGTCACGTCCAACAACGGAGAGTCCACTGATTGCGAAGGT 11097 Query 182765 TTTCGCCGAATCACCCTCCGTGACAATGAGAGTACACTTTCCAGATTGTGCCGTACCCGC 182824 || || || || ||||| || | |||||| || || ||| | | || ||||| || Sbjct 11096 CTTGGCTGATTCGCCCTCAGTCAAAATGAGCGTGCAGTTTTGACCCTTCGCTGTACCAGC 11037 Query 182825 CTTGTTCGCGTCATCCAACTTGGGAATACCGGTAATTTTGGACTT 182869 | |||||| || || | ||| ||||| ||||| | || ||||| Sbjct 11036 GTAGTTCGCATCGTCGAGCTTCGGAATTCCGGTGAGCTTCGACTT 10992 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 627961409203200