Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pythium_20insidiosum_20[genbank_20GCA_5F000764265.1_202014-10-06] 8,992 sequences; 45,609,708 total letters Query= NC_028092.1 Length=193301 Score E Sequences producing significant alignments: (Bits) Value seq3132 259 6e-64 seq4347 188 9e-43 seq7148 96.9 4e-15 >seq3132 Length=41768 Score = 259 bits (286), Expect = 6e-64 Identities = 690/1040 (66%), Gaps = 36/1040 (3%) Strand=Plus/Minus Query 118527 TCCGCGAGACCTTGGACACCGAGGCCAATTGGGCGATGTCTCATATTAGACTTCCGAGCG 118586 ||||||||||| || || |||| ||| || ||||| || | || || | || || Sbjct 32747 TCCGCGAGACCCTGCACGCCGATGCCGATCGGGCGGTGGCGCAGGTTGC---TGCGCTCG 32691 Query 118587 GTCTCCACG---GGATAAAAATTCCTATCGATAACCCTATTTAGATTTTTGGTGACAACC 118643 | ||| | || || | || | ||||| ||| | || || || ||||| ||| Sbjct 32690 GCCTCGGGGATCGGGTAGTAGTTGATGTCGATGACCTTGTTCAGGTTGCGCGTGACGACC 32631 Query 118644 TTTGTGATTTCATGAAGCTTTTCGTAATCAAAACTGCGAGTCTCTTCATTGACATACTTA 118703 || ||||| || | ||||| | | | ||||| | | || || | ||| |||| Sbjct 32630 TTGGTGATGTCGTAGAGCTTCTTGAAGTCAAAGGTCT---TGTCGTCGGTCACAAACTTG 32574 Query 118704 GGAAGGGCGATTGACGCCAGATTACACACAGAGGTCTCATCCTTATCAGTGTACTCTATA 118763 | || ||||| ||||| || || ||||| | | |||||| |||||||| | Sbjct 32573 GACAGCGCGATGGACGCGAGGTTGCACACCGCGACCTCATCGGGCGACGTGTACTCGAGC 32514 Query 118764 ATTTCCGTGCACAAGTTTGAACTCTTA---ATGGTGCCCAAGTTCTTTTGATTTGACTTT 118820 | || ||| | ||| ||| || ||||| | ||||| || || ||||| Sbjct 32513 ACCTCGCAGCAGAGGTTG---CTCGAGCGGATCGTGCCGAGGTTCTGCTGGTTCGACTTG 32457 Query 118821 GTGTTACACGCATCCTTGTAAAGCATGTATGGCGTCCCCGTCTCCGTTTGGGACTTGAGA 118880 ||| |||| |||||||| |||||||| ||||| |||||||| | || |||| ||| Sbjct 32456 CGGTTGCACGAGTCCTTGTACAGCATGTACGGCGTGCCCGTCTCGATCTGCGACTCGAGG 32397 Query 118881 ATAGCCTTCCAGACATCGGCAGCTG-GCACAG-TGGCGTTG---GCTCGCCCCTCTTCCT 118935 || || ||||| || |||| || | | | | ||| || || ||||| || Sbjct 32396 ATCGCGAACCAGA-----GCTGCTGCGCGCGGATCGTCTTGCGCGCGCGGCCCTCGCGCT 32342 Query 118936 CGTACTTTGTGTAGAGGGCTTCAAACTCTTCACCC-ACGGCCTCTGAGAGCCCTGGTGCC 118994 |||||| ||| || || || ||||| || ||| ||| | | | ||||||| || ||| Sbjct 32341 CGTACTGGTGGTACAGCGCCTCGAACTCGTCGCCCCACGTCGTGT-AGAGCCCCGGCGCC 32283 Query 118995 TTATCTGGGCAGAAGAGAGACCATTGACCACCCTCCTCAACCCGCTTCATGAAGAGGTCT 119054 | | |||||||| || ||| | || |||| || |||||||||||||| || Sbjct 32282 TCGTTCGGGCAGAACAGGCTCCACTCGCCGTTGGCCTCGACGCGCTTCATGAAGAGATCG 32223 Query 119055 GGGATCCAGAGCGCCGAGAAGAGATCCCGACAGCGA-GCTTCTTCATCCCCCTGATTGAG 119113 |||||||| | ||| |||||||||| || ||| || || | | || || || Sbjct 32222 GGGATCCACATCGCGTAGAAGAGATCACGCGCGCGGTGCAGCT-CGTTGCCGTGGTTCTT 32164 Query 119114 ACGCAACTCCAAAAAGTCCATGATATCCGCGTGCCACGGTTCCAGGTACACCGCGATTGA 119173 | |||| || || | ||| || ||||||||||| |||||||||| ||||| || Sbjct 32163 CTTGAGGTCCAGGAACTCGAAGATGTCGGCGTGCCACGGCTCCAGGTACATCGCGAACGA 32104 Query 119174 CCCCTTACGA---CGACCAGCCTGGTTTACATACCTCGCAGTGGCGTTAAATACACGAAG 119230 ||||| || | || |||||| || || | ||| ||| |||| || || || || Sbjct 32103 GCCCTTGCGCTTGCCGCCGCCCTGGTCGACGTAGCGCGCCGTGTCGTTGAAGACGCGCAG 32044 Query 119231 CATTGGAATGATACCATCGGATTGGCCATTTGTCCCCCGAAT--ACGAGACTTATTGGCT 119288 ||| || | || || | || ||| || || || || || ||||| || | || Sbjct 32043 CATGGGCACGAGGCCGTTCGACGAGCCGTTCGTGCCGCGGATGTACGAG--TTCGTCGCG 31986 Query 119289 CTGACATCGTGGATGTGCATACCAATACCCCCTGCCCACTTTGAGATTTGCGCGCACTCC 119348 | || | ||| | | | || || || || |||||||| ||||| |||||||| | Sbjct 31985 CGGATGTTGTGCACGCTGACGCCGATGCCGCCAGCCCACTTGGAGATGCACGCGCACTGC 31926 Query 119349 GTGAGACTGCCGTAGATCCCATCGATCGAGTCACCCTTATTTGCGATGAGGAAGCAGCTC 119408 |||| || ||||||| || ||||||||||| |||| | |||| |||||||| | Sbjct 31925 TTGAGCGTGTCGTAGATGCCCTCGATCGAGTCGTCCTTCATGGCGAGCAGGAAGCACGAC 31866 Query 119409 GACATTTGAGGCCTGGGTGTACCAGCGTTGAAGAGAGTTGGTGTCGCGTGGATGAACATA 119468 |||| || || | || || || |||||||| || || || |||||||| |||| | Sbjct 31865 GACAGCTGCGGGCGCGGCGTGCCCGCGTTGAACAGCGTCGGCGTCGCGTGCGTGAAGAAG 31806 Query 119469 CCTTGGGACATCTTGTCGTAGGTCTCCAAGACGGCGGGAATGTCTTCCCCGTGAATACCG 119528 | ||| ||||| | ||||| ||||| | | ||| |||||| | | ||| || ||| Sbjct 31805 CTTTGCGACATGTACTCGTACGTCTCGAGCGCAGCGTCAATGTCGTGCTTGTGGATGCCG 31746 Query 119529 ATCGAGACCCGCATAAACAT 119548 | | ||| |||| || ||| Sbjct 31745 ACGGCGACACGCAGAATCAT 31726 >seq4347 Length=93765 Score = 188 bits (208), Expect = 9e-43 Identities = 399/582 (69%), Gaps = 20/582 (3%) Strand=Plus/Plus Query 129728 TAGTCCCCAACCCGCTTCTCGAAGAAGTTTGTCTTCCCGTCCAAGCTGATATTCTCCATA 129787 || || ||||| ||||||||||||||||| ||||| || | | ||| | ||||| Sbjct 72436 TACTCGCCAACGCGCTTCTCGAAGAAGTTGGTCTTGCCCTGGAGCGAGATCATGTCCATC 72495 Query 129788 AAATCAAATGGGTTCTTTGAGTTCCAAATTGCTGGC-ACTCCAATCTGTTTGAGGAGACG 129846 | ||||| |||||| || |||| |||| || |||| | | |||||| || Sbjct 72496 CAGTCAAACGGGTTCGACACCTTGTAAATCT-TGGCGACACCAAGCGCGTGGAGGAGGCG 72554 Query 129847 ATCCGAGACGTACTCAATGTACTCAGACATCTTCTCGGAGTTCATACCGATGAGGTTACA 129906 ||| | | | |||| ||||||| |||| | |||||||| ||||| || | Sbjct 72555 ATCGGCGCAGAACTCGATGTACTGGCACATGAGCGACGAGTTCATGCCGATCAGCTCGAC 72614 Query 129907 TGGGAGCGCGTCCAAGATGAACCCCTTCTCAATGTCCACAGCTTCCCGCACGATGGCGTG 129966 || |||| |||| || |||| |||||||||| | || || || || | ||| | || Sbjct 72615 CGGAAGCGAGTCCTGGACGAACTCCTTCTCAATCGCGACGGCATCGCGAATGATCTCATG 72674 Query 129967 AATG---GTCTCCGTGCCAGGTCTATTGCGCAAAGTCTTGAAGAGTTCCAC-GGCAAAC- 130021 ||| | ||||| | || | | ||| ||| |||| |||| | | ||||| | Sbjct 72675 GATGCGCGACTCCGGG--AGCT-TGTTGAC--AAG-CTTG--GAGTACAGCAGGCAAGCG 72726 Query 130022 ---TCCTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGC 130078 || |||||| ||||| || || |||||||| || |||||||||| || || ||| Sbjct 72727 AAGTCGCAGTGGAGGCCCTCATCGCGCGAGATGAGCTCGTTCGAGAAGCTGAGGCCAGGC 72786 Query 130079 ATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCC 130138 |||||||| |||||||| | |||||| || | || || ||||| |||||||| || ||| Sbjct 72787 ATGAGACCACGCTTCTTGAGCCAGAAGATGGAGCAGAACGAGCCCGAGAAGAAAATGCCC 72846 Query 130139 TCCACACACGCGAACGCAAAGAGACGCTCAGC-AAAGGAGCGGGACTTTGTATCAAACCA 130197 || || |||||||| | | |||||||| |||| ||| | | | || |||| Sbjct 72847 TCAACGGCAGCGAACGCGACAATGCGCTCAGCAAAAGCCGCGCGGC-GCGAGTCGCACCA 72905 Query 130198 CTTCATCGCCCACTGCGCCTTTTTCTCGATACACGGGACGGTCTGGATCGCTTCAAAGAG 130257 ||| | |||||| |||||||| |||| | || || | ||||| ||| || | ||| Sbjct 72906 CTTGAGCGCCCAGTGCGCCTTCTTCTGCACGCATGGAATGGTCTCGATGGCGCGGAGGAG 72965 Query 130258 TTCCTTCTTTTCTGATGGATCTTTGATGTACTTATCTATGAG 130299 | ||||| || | | || ||||||||| | || ||||| Sbjct 72966 GTGGTTCTTCTCCGTCTGGTCCTTGATGTACGTGTCAATGAG 73007 >seq7148 Length=46129 Score = 96.9 bits (106), Expect = 4e-15 Identities = 281/422 (67%), Gaps = 32/422 (8%) Strand=Plus/Minus Query 179724 AAACCC-CAACTTG-AGGAGCGATGGCCAGAAGTAGTGGATCATATTGAGGATGAGACCC 179781 |||||| ||| || || || || |||||||||| || || | ||||| || |||||| Sbjct 11398 AAACCCTCAATTTTCAGAAGAGACGGCCAGAAGTGATGAATAAAATTGATGACCAGACCC 11339 Query 179782 TTAATGTGTGAACCATCGTTATCCGCATCCGTCATAATCATAAGCCGACCATAGCGAAGC 179841 || ||||| || || | |||| ||| | ||| ||||| || | || || || || Sbjct 11338 TTGATGTGACTGCCGTCATGATCCTGATCTGCCATGATCATCAGGTGCCCGTAACGTAG- 11280 Query 179842 TCGGAAACATC-TTGA-TAATCCTTA---CCTTGTTGAAGACCCAAGATCTTCT-TGAGA 179895 | | || |||| | || ||| || || | || |||||||||||| | || Sbjct 11279 ----ACTCTTCGTTGACTCATACTTGTGGCCGTGCTTGAGTCCCAAGATCTTCACTAAGT 11224 Query 179896 TCATTGAA-CTCTTGGTTTGATGTGAGTTGCGCCACTGAA--GCATCTCGGACATT---- 179948 || |||| ||| | ||| | | ||| | | ||| || || || ||||| Sbjct 11223 TC--TGAATCTCCTCGTTCTTCATAATTTGAG--AATGACTCGCTTCACGAACATTCAGT 11168 Query 179949 --TTTACACTTCCCACGGAGAGGGAACACACCGTAGTGATCACGACCAACCACAGAGAGA 180006 ||| | |||| || || ||||||||||| | ||||| ||||| || ||||| Sbjct 11167 AGTTTGCCCTTC------AGTGGAAACACACCGTAATAGTCACGTCCAACAACGGAGAGT 11114 Query 180007 CCAGCAACTGCGAGGGTCTTCGCGGAATCACCCTCCGTCACGATGAGCGTACACTTTCCA 180066 ||| | ||||| |||||| || || || ||||| |||| |||||||| || ||| | Sbjct 11113 CCACTGATTGCGAAGGTCTTGGCTGATTCGCCCTCAGTCAAAATGAGCGTGCAGTTTTGA 11054 Query 180067 GATTGTGCCGTCCCTGCCTTGTTCGCGTCGTCCAACTTGGGAATACCAGTAATTTTGGAC 180126 | || || || || | |||||| ||||| | ||| ||||| || || | || ||| Sbjct 11053 CCCTTCGCTGTACCAGCGTAGTTCGCATCGTCGAGCTTCGGAATTCCGGTGAGCTTCGAC 10994 Query 180127 TT 180128 || Sbjct 10993 TT 10992 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 618365687883520