Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pythium_20insidiosum_20[genbank_20GCA_5F000764265.1_202014-10-06] 8,992 sequences; 45,609,708 total letters Query= NC_028093.1 Length=182309 Score E Sequences producing significant alignments: (Bits) Value seq3132 201 1e-46 seq4347 154 2e-32 seq5583 89.7 6e-13 >seq3132 Length=41768 Score = 201 bits (222), Expect = 1e-46 Identities = 941/1474 (64%), Gaps = 35/1474 (2%) Strand=Plus/Plus Query 104222 CCACAGTACATGTTCATGCGCGTGGCCATCGGTATTCATGGGGAAGACATTGATTCTGTC 104281 || ||| | ||| | |||| || ||| |||| || || | | |||||||| ||| Sbjct 31717 CCGCAGCAGATGATTCTGCGTGTCGCCGTCGGCATCCACAAGCACGACATTGACGCTGCG 31776 Query 104282 TTGGAGACATACGACAAGATGTCCCAAGGTATGTTCATTCACGCAACACCAACCCTCTTC 104341 | ||||| ||||| | ||||| ||| | | |||| ||||| || || || || ||| Sbjct 31777 CTCGAGACGTACGAGTACATGTCGCAAAGCTTCTTCACGCACGCGACGCCGACGCTGTTC 31836 Query 104342 AATGCTGGTACACCAAGACCCCAAATGTCCAGTTGCTTCCTTATCGCCAACAAGGAGGAC 104401 || || || || || | || || |||| |||||||| |||||| ||||| ||| Sbjct 31837 AACGCGGGCACGCCGCGCCCGCAGCTGTCGTCGTGCTTCCTGCTCGCCATGAAGGACGAC 31896 Query 104402 TCAATCAACGGTATCTATGGAACTCTTACGGAGTGTGCGCAAATCTCAAAGTGGGCTGGG 104461 || ||| | || ||||| | || || | | |||| ||| ||||| ||||||||||| Sbjct 31897 TCGATCGAGGGCATCTACGACACGCTCAAGCAGTGCGCGTGCATCTCCAAGTGGGCTGGC 31956 Query 104462 GGTATTGGGATGCACATCCATGATGTGAGAGCCAATAAATCTCGTA--TTCGGGGGACAA 104519 || || || | | | || | | | || | || |||||| | || || || | Sbjct 31957 GGCATCGGCGTCAGCGTGCACAACATCCGCGCGACGAA--CTCGTACATCCGCGGCACGA 32014 Query 104520 ATGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGCGCTATG 104579 | || || | || | | || ||||| ||||| || |||| ||| |||||||| | Sbjct 32015 ACGGCTCGTCGAACGGCCTCGTGCCCATGCTGCGCGTCTTCAACGACACGGCGCGCTACG 32074 Query 104580 TAAATCAAGCTGGGCGT---CGAAAGGGATCTATCGCAGTCTATCTTGAGCCATGGCACG 104636 | | || | || | || ||||| || |||| | || || ||||| ||||||| Sbjct 32075 TCGACCAGGGCGGCGGCAAGCGCAAGGGCTCGTTCGCGATGTACCTGGAGCCGTGGCACG 32134 Query 104637 CGGATATCATGGAGTTCCTTGAGTTGCGTCTCAACCAAGGTGACGAGGAGGCGCGGTGC- 104695 | || ||| | |||||||| || | ||||| || ||||| | | | | || Sbjct 32135 CCGACATCTTCGAGTTCCTGGACCTCAAGAAGAACCACGGCAACGAGCTG-CACCGCGCG 32193 Query 104696 CGCGATCTCTTCTCCGCTCTCTGGATTCCAGATCTCTTCATGAAGAGAGTTGAGGAGAGT 104755 || |||||||||| ||| | ||||| || ||||||||||||||| | || |||| | Sbjct 32194 CGTGATCTCTTCTACGCGATGTGGATCCCCGATCTCTTCATGAAGCGCGTCGAGGCCAAC 32253 Query 104756 GGCAATTGGTCTCTCTTTTGTCCAGACAAGGCACCTGGTCTCTCCGATGCCGT-GGGTGA 104814 ||| | ||| || || || || || |||| || || |||| | | | ||| ||| || Sbjct 32254 GGCGAGTGGAGCCTGTTCTGCCCGAACGAGGCGCCGGGGCTCTAC-ACGACGTGGGGCGA 32312 Query 104815 GGAGTTTGAAGCCCTTTACACAAAGTACGAGGAAGAAGGTCGGGCGACTGCGACGGTGCC 104874 ||||| || || || ||| |||||||| || || || ||| |||| | | Sbjct 32313 CGAGTTCGAGGCGCTGTACCACCAGTACGAGCGCGAGGGCCGCGCGCGCAAGACGATCCG 32372 Query 104875 AGCTGCCG-ATGTGTGGAAAGCTATTCTCAAGTCTCAAACCGAGACTGGTACACCATACA 104933 || || | | | ||| || || ||| |||| || | |||||| || || || |||| Sbjct 32373 CGC-GCAGCAGCTCTGGTTCGCGATCCTCGAGTCGCAGATCGAGACGGGCACGCCGTACA 32431 Query 104934 TGCTTTACAAAGACGCCTGTAACCAAAAGAGTAATCAAAAGAATTTGGGTGTGAT---CA 104990 |||| ||||| ||| | || |||| ||| || || |||| | || ||| | Sbjct 32432 TGCTGTACAAGGACTCGTGCAACCGCAAGTCGAACCAGCAGAACCTCGGCACGATCCGCT 32491 Query 104991 AGAGTTCCAATCTCTGTACAGAAATCTTGGAATTTACAGACAAAGATGAGACGGCTGTGT 105050 ||| ||| ||||| || | | || | || |||||| || |||| Sbjct 32492 CGAG---CAACCTCTGCTGCGAGGTGCTCGAGTACACGTCGCCCGATGAGGTCGCGGTGT 32548 Query 105051 GTAACCTCGCATCAATCGCTCTCCCCAAGTATGTGGATCCAGAGACAAAGACATTTGATT 105110 | |||||||| || ||||| || |||||| |||| || ||| ||||| ||||| | Sbjct 32549 GCAACCTCGCGTCCATCGCGCTGTCCAAGTTTGTG--ACCGACGAC-AAGACCTTTGACT 32605 Query 105111 ATGAAAAACTCCACGAAGTTACGAAAACTGTCACCAAAAACCTAAACAGAGTTATTGATA 105170 | || ||| |||| | || || ||||| ||||| |||| || || || | Sbjct 32606 TCAAGAAGCTCTACGACATCACCAAGGTCGTCACGCGCAACCTGAACAAGGTCATCGACA 32665 Query 105171 GAAATTTTTACCC---CGTTGAGACTGCTCGTAAATCTAATATGAGACACCGTCCAATTG 105227 || | ||||| | ||| | | || | || || | ||||| || || | Sbjct 32666 TCAACTACTACCCGATCCCCGAGGCCGAGCGCA---GCAACCTGCGCCACCGCCCGATCG 32722 Query 105228 GTCTCGGTGTTCAGGGTCTCGCGGATGTATTCATTCTTTGTCGCCACGCATTTGATTCCG 105287 | |||| || |||||||||||||| | ||||| || || |||| || || || Sbjct 32723 GCATCGGCGTGCAGGGTCTCGCGGACGCGTTCATCCTCATGGGCTACGCGTTCGAGAGCG 32782 Query 105288 ACGAAGCGAAGGAAATCAATGCGCGCATATTTGAGACCATGTATCACGCCGCTCTTGAGG 105347 |||| || || |||| | ||| || ||||| |||| | |||| | |||| Sbjct 32783 ACGAGGCCCGCGAGCTCAACAAGAACATCTTCGAGACGCTGTACTTTGGCGCTATGGAGG 32842 Query 105348 CGAGTTCAGAGTTGGCAGAGGTTGATGGTCCATATGAAACCTTTGAGGGTTCTCCAGCTT 105407 | ||| | ||| || | || || || | | || |||||||| || | | Sbjct 32843 CCTCGATGGAGCTCGCACGGGAGCACGGCCCGTACGGCAGCTACGAGGGTTCGCCCG-TG 32901 Query 105408 CACAAGGGGTGCTT-CAATTTGATATGTGGGAAGGTGA----GACCAAGCTTCACTACGA 105462 |||||| ||| || || || ||||||| || | ||| | || || || Sbjct 32902 AGCAAGGGCATCTTCCAGTTCGACATGTGGG-GCGTCACGCCGACGTCGGGTCTCTGGGA 32960 Query 105463 CTGGGAAGCTCTCAAGGAACGCATCAAGGAGAAGGGTCTTCGTAACAGTCTCCTCATGGC 105522 ||||| || ||||||| || || | || | || | || ||| || || | || Sbjct 32961 CTGGGCCGCGCTCAAGGCGAGCGTCGCGCAGTACGGCGTGCGCAACTCGCTGCTGCTCGC 33020 Query 105523 TCCAATGCCAACAGCCTCCACCGCACAAATCTTGGGTAATAATGAATGCTTTGAACCCTA 105582 || ||||| || || || ||||| || ||| | || || || || | | || || | Sbjct 33021 GCCGATGCCGACGGCGTCGACCGCGCAGATCCTCGGCAACAACGAGTCGATCGAGCCGTT 33080 Query 105583 CACGACGAACATCTATCTGAGAAGAACCCTCGCGGGAGAGTTTGTGATTGTCAACAAGCA 105642 |||||| ||||| || | | ||||| || ||||| ||| || |||||| | Sbjct 33081 CACGACCAACATGTACAACCGCCGCGTGCTCGCTGGCGAGTTCACGATCGTGAACAAGTA 33140 Query 105643 TCTCGTGGATGACCTCAAAGAGATTGGTCTCTGG 105676 ||| || | || |||| ||| | || ||||| Sbjct 33141 CCTCATGAAGGAGCTCATCGAGCTCGGCATCTGG 33174 >seq4347 Length=93765 Score = 154 bits (170), Expect = 2e-32 Identities = 200/274 (73%), Gaps = 2/274 (1%) Strand=Plus/Minus Query 94672 CTCATAGACAAGTATATTAAGGATGGTGCTGAGAAGAAGCAGCTCTTTGAAGCCATCCAA 94731 ||||| |||| ||| || ||||| | |||||||| || ||| | |||||| | Sbjct 73007 CTCATTGACACGTACATCAAGGACCAGACGGAGAAGAACCACCTCCTCCGCGCCATCGAG 72948 Query 94732 ACAGTTCCGTGTATTCAAAAGAAAGCGGATTGGGCTATGAAGTGGTTTGATACAAAGTCG 94791 || |||| || | || ||||| ||| | ||||| | ||||||| || | | || Sbjct 72947 ACCATTCCATGCGTGCAGAAGAAGGCGCACTGGGCGCTCAAGTGGTGCGACTCGC-GCCG 72889 Query 94792 CGTTCCTTT-GCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGG 94850 || |||| |||||||| | |||| || || |||||||| || |||||||| || Sbjct 72888 CGCGGCTTTTGCTGAGCGCATTGTCGCGTTCGCTGCCGTTGAGGGCATTTTCTTCTCGGG 72829 Query 94851 TTCCTTCTGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTC 94910 || |||||| | || | |||||||||||||| ||||||||||| || ||| ||||||| Sbjct 72828 CTCGTTCTGCTCCATCTTCTGGCTCAAGAAGCGTGGTCTCATGCCTGGCCTCAGCTTCTC 72769 Query 94911 CAACGAGCTTATCTCTCGTGACGAGGGACTCCAC 94944 |||||||| ||||| || || ||||| |||||| Sbjct 72768 GAACGAGCTCATCTCGCGCGATGAGGGCCTCCAC 72735 >seq5583 Length=27463 Score = 89.7 bits (98), Expect = 6e-13 Identities = 82/104 (79%), Gaps = 0/104 (0%) Strand=Plus/Plus Query 169349 TTCCCACGAAGAGGGAAGACACCGTAGTGATCACGACCAACGACGGAGAGACCCGCGACT 169408 || ||||| || |||||||| ||||| | || || |||||||| | ||| |||||||| Sbjct 19169 TTGCCACGCAGCGGGAAGACGCCGTACTTGTCGCGTCCAACGACCGCGAGTCCCGCGACG 19228 Query 169409 GCGAGAGTCTTCGCCGAGTCACCCTCGGTGACGATGAGCGTACA 169452 ||||| | ||| ||||||||||| || |||| ||| | || ||| Sbjct 19229 GCGAGCGCCTTGGCCGAGTCACCTTCCGTGAGGATCAACGCACA 19272 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583195241486080