Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pythium_20insidiosum_20[genbank_20GCA_5F000764265.1_202014-10-06] 8,992 sequences; 45,609,708 total letters Query= NC_028094.1 Length=473558 Score E Sequences producing significant alignments: (Bits) Value seq8210 150 5e-31 seq8355 93.3 1e-13 seq4852 93.3 1e-13 seq6373 86.0 2e-11 >seq8210 Length=52877 Score = 150 bits (166), Expect = 5e-31 Identities = 927/1472 (63%), Gaps = 18/1472 (1%) Strand=Plus/Minus Query 349205 GGAATCGATTTAGGTACTACTTATTCTTGTGTTGCTGTTTGGCAAAATGATCGTGTAGAA 349264 || |||||| | ||||| || || || || || | || ||||| || || || || || Sbjct 16084 GGTATCGATCTCGGTACGACCTACTCGTGCGTCGGCGTGTGGCAGAACGACCGCGTCGAG 16025 Query 349265 ATAATTGCAAATGATCAAGGTAACAGAACAACGCCATCATACGTTGCATTTACCGAAACT 349324 || ||||| || || || |||||| | || ||||| || ||||| || || || || || Sbjct 16024 ATCATTGCCAACGACCAGGGTAACCGCACGACGCCGTCGTACGTCGCCTTCACGGACACG 15965 Query 349325 GAGCGTATGATTGGTGATTCTGCAAAAAATCAAGCTGCTGCTAATCCAAAAAATACGGTT 349384 |||||| | || |||||| | || || || || | || || | | || ||||| Sbjct 15964 GAGCGTCTCATCGGTGATGCCGCCAAGAACCAGGTCGCCATGAACGCCACGAACACGGTG 15905 Query 349385 TTTGATGCTAAGCGACTTATTGGTAG-AAGTTTTTCTGACAAATCTACACAATCTGATCT 349443 || || |||||||| || ||||| | ||||| | | || | || |||| | Sbjct 15904 TTCGACGCTAAGCGTCTCATTGGCCGCAAGTTCAGCGACCCGATTGTC-CAGGCTGACAT 15846 Query 349444 AAAACATTTTCCTTTTACTGTTGTTCCAAAAGACGGTGATAAACCAATTATTGAGGTTGA 349503 || || | || || || || || | ||||| || || || ||| | Sbjct 15845 CAAGCACTGGCCGTTCACGGTGTCGCCGGGCGCTGGTGACAAGCCGCAGATCACGGTCCA 15786 Query 349504 ATATAAAGGTGAA-CAAAAACAATTTTTACCCGAAGAAATTTCATCAATGGTTTTAGTTA 349562 | || || || | || || || || || || || || || ||||| | | | Sbjct 15785 GTTCAAGGGCGAGTCGAAGACG-TTCCAGCCGGAGGAGATCTCGTCGATGGTCCTCATCA 15727 Query 349563 AAATGAAGGAAATTGCTGAAGCATATTTAGGTGAAACAGTAACTGATGCTGTTATTACTG 349622 | ||| || | ||||| || | | || | || | | || || ||||| | Sbjct 15726 AGATGCGTGAGGTCGCTGAGGCCTTCATTGGCAAGGAGGTCAAGAACGCCGTCATTACGG 15667 Query 349623 TACCAGCCTATTTTAATGATGCCCAGCGTTCTGCAACAAAAGATGCTGGCAGCATTGCGG 349682 | || ||||| || || || | |||||| || || || |||||||| ||| || | Sbjct 15666 TCCCGGCCTACTTCAACGACTCGCAGCGTCAGGCCACGAAGGATGCTGGTGCCATCGCCG 15607 Query 349683 GGTTAAATGTTCTAAGAATGATTAATGAACCCACTGCTGCAGCAATTGCATATGGGCTTG 349742 | | || || || | || ||||| || ||||| ||||| || || || || || |||| Sbjct 15606 GCCTCAACGTGCTCCGTATCATTAACGAGCCCACGGCTGCCGCCATCGCCTACGGTCTTG 15547 Query 349743 ATAAAATGAGTGACCAAGaaaaaaaTATTCTTATTTTTGATTTAGGTGGTGGTACTTTTG 349802 | || | | ||| || || | || || || ||| | ||||| ||||| || | Sbjct 15546 ACAAGAAGGGTGGT---GAGCGCAACGTGCTCATCTTCGATCTTGGTGGCGGTACCTTCG 15490 Query 349803 ATGTATCACTACTAACACTTGAAGAGGGAATTTTTGAAGTTAAAGCAACTGCTGGTGATA 349862 |||| || || || | |||| ||||| || || || || || || || |||||||| | Sbjct 15489 ATGTGTCGCTCCTGAGCATTGAGGAGGGTATCTTCGAGGTCAAGGCTACGGCTGGTGACA 15430 Query 349863 CACATCTTGGTGGAGAAGATTTTGATAATCGTCTCGTTTCGCATTTTGTTAAAGAATTTA 349922 | ||||||||||| || ||||| || || || ||||| || || || || | Sbjct 15429 CGCATCTTGGTGGTGAGGATTTCGACAACCGCCTCGTCGACCACTTCACGGCCGAGTTCA 15370 Query 349923 AGCGTCAAGC-TAAAATTGATAT-TGGAGATAATCCTAGAGCAATGCGTCGCCTAAGAAC 349980 |||| ||||| | || | ||| || | | || | ||||| || | || Sbjct 15369 AGCG-CAAGCACCGCAAGGACCTCACGAG-CAACCAGCGTGCTCTCCGTCGTCTGCGTAC 15312 Query 349981 TGCGTGTGAACGTGCTAAGCGTTCCTTATCATCTACTACCCAAACCTCTATTGAAATTGA 350040 || || || || |||||||| | | || || | |||| ||| || || ||||| Sbjct 15311 GGCCTGCGAGCGCGCTAAGCGCACGCTCTCGTCGTCGGCCCAGGCCTACATCGAGATTGA 15252 Query 350041 TTCTCTTGCTGATGGCAAAGATTTCTTTTCATCTATTACACGTGCTCGGTTTGAAGAATT 350100 || || ||||| || ||| || | || || |||||||| || || || | Sbjct 15251 CTCGCTCTTCGATGGTGTCGACTTCAACTCGACCATCACGCGTGCTCGTTTCGAGGACCT 15192 Query 350101 ATGTATGGATCTTTTTAGAGCA--ACAATGGATCCTGTGGAAAAAGTATTAAAAGATGCA 350158 || ||| || || ||| || ||||| ||||| || || || | || || Sbjct 15191 CTGCGCGGA-CTACTT-CCGCAAGACGATGGAGCCTGTTGAGAAGGTGCTTCGTGACGCC 15134 Query 350159 AAAATGTCCAAAAATCAGATTGATGAAGTAGTTTTAGTTGGTGGTTCTACACGTATTCCA 350218 || | || || | ||| | | || || || | || ||||| || || ||||| || Sbjct 15133 AAGCTCTCGAAGAGCCAGGTGCACGAGGTCGTCCTTGTCGGTGGCTCGACCCGTATCCCG 15074 Query 350219 AAAGTTCAACAGTTACTATCTGAGTTTTTTAATGGCAAAGAACCTTCTAGATCAATTAAT 350278 || || || ||| | || || || || || || ||||| || |||| | || || || Sbjct 15073 AAGGTCCAGCAGCTCCTGTCGGACTTCTTCAACGGCAAGGAGCCTTGCAAGTCGATCAAC 15014 Query 350279 CCAGATGAAGCTGTTGCATATGGTGCTGCTGTTCAGGCATCTAT-TTTATCTGGAAATAA 350337 || ||||| |||||||| | ||||| | || ||||| |||| | | | | || | Sbjct 15013 CCTGATGAGGCTGTTGCCTTCGGTGCCACGGTCCAGGCTGCTATCCTCAGCGGCAACGAC 14954 Query 350338 GAGTTCTAAAA--TTGATGATCTATTACTACTAGATGTAACTCCACTTTCGCTTGGATTA 350395 ||| | || | | ||||| | || || ||||| || || || ||||| || | Sbjct 14953 CAGTCGGAGAAGCTCCAGGATCTGCTCCTCCTCGATGTGACCCCGCTGTCGCTCGGTCTC 14894 Query 350396 GAAACTTCTGGTGAAGTAATGACTGTTCTTATTCCTAGAAATAGTACTGTACCTACAAAA 350455 || || | |||| || ||||| || || || | || | || || || || || Sbjct 14893 GAGACGGCCGGTGGTGTCATGACGACGCTGATCCCGCGTAACACGACGGTGCCGACCAAG 14834 Query 350456 AAGTCCCAAACTTTTTCTACATTTGCAGATAATCAGCCAGCGGTAACAATTCAAGTATTT 350515 ||| | || || || || || | || || || ||||| | || || || || || Sbjct 14833 AAGACGCAGACGTTCTCGACGTACGCCGACAACCAGCCTGGTGTGCTCATCCAGGTCTTC 14774 Query 350516 GAAGGTGAACGTGCTCGCACTAAAGATAATAATAAACTTGGAGAATTTACCCTAAGTGAA 350575 || ||||| ||| | || || || || || || | || | ||| | Sbjct 14773 GAGGGTGAGCGTTCGATGACGCGCGACAACAACCTCCTCGGCAAGTTCAACCTCGACGGT 14714 Query 350576 ATTCCACCAATGCCTAGAGGAGTTCCTCAGATTGAAGTCTCTTTCGATATTGATTCAAAT 350635 || || || ||||| | || || || ||||| || ||| | ||||| |||||| | || Sbjct 14713 ATCCCGCCGATGCCGCGTGGTGTGCCGCAGATCGACGTCACGTTCGACATTGATGCCAAC 14654 Query 350636 GGTATTTTAAATGTTACCGCAGTTGAAAAATC 350667 ||||| | || || | || ||||| || || Sbjct 14653 GGTATCCTGAACGTGTCGGCCGTTGAGAAGTC 14622 >seq8355 Length=1115 Score = 93.3 bits (102), Expect = 1e-13 Identities = 66/76 (87%), Gaps = 0/76 (0%) Strand=Plus/Plus Query 235887 TAGGGGGATGTAGATCAATTGGTAGATCGCTCGCTTTGCATGCGAGAGGTACCGGGATCA 235946 || |||||||||| ||| ||||||| ||||||||| ||||||||||||||| |||||| Sbjct 699 TATGGGGATGTAGCTCAGATGGTAGAGCGCTCGCTTAGCATGCGAGAGGTACTGGGATCG 758 Query 235947 AAACCCAGCATCTCCA 235962 | ||||||| |||||| Sbjct 759 ATACCCAGCTTCTCCA 774 >seq4852 Length=1542 Score = 93.3 bits (102), Expect = 1e-13 Identities = 66/76 (87%), Gaps = 0/76 (0%) Strand=Plus/Minus Query 235887 TAGGGGGATGTAGATCAATTGGTAGATCGCTCGCTTTGCATGCGAGAGGTACCGGGATCA 235946 || |||||||||| ||| ||||||| ||||||||| ||||||||||||||| |||||| Sbjct 1108 TATGGGGATGTAGCTCAGATGGTAGAGCGCTCGCTTAGCATGCGAGAGGTACTGGGATCG 1049 Query 235947 AAACCCAGCATCTCCA 235962 | ||||||| |||||| Sbjct 1048 ATACCCAGCTTCTCCA 1033 >seq6373 Length=16006 Score = 86.0 bits (94), Expect = 2e-11 Identities = 59/67 (88%), Gaps = 0/67 (0%) Strand=Plus/Minus Query 74488 GTGGGATTCGAACCCACGAGTCTTACGACAGTAGAACTTGAGTCTACCCCCTTAGACCAC 74547 |||||||| |||||||||||| | |||||||||||||||||||||||||| |||| | Sbjct 1703 GTGGGATTTGAACCCACGAGTGCGAACACAGTAGAACTTGAGTCTACCCCCTTGGACCGC 1644 Query 74548 TCGGGCA 74554 ||||||| Sbjct 1643 TCGGGCA 1637 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1515079827540576