Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pythium_20insidiosum_20[genbank_20GCA_5F000764265.1_202014-10-06] 8,992 sequences; 45,609,708 total letters Query= NC_028112.1 Length=178262 Score E Sequences producing significant alignments: (Bits) Value seq3132 383 2e-101 seq5583 190 2e-43 seq2702 143 3e-29 seq1220 131 2e-25 seq4347 116 4e-21 seq8570 95.1 1e-14 >seq3132 Length=41768 Score = 383 bits (424), Expect = 2e-101 Identities = 1111/1686 (66%), Gaps = 53/1686 (3%) Strand=Plus/Minus Query 80005 ACCGTCACCTGAATTGGCTTGGCCTTTGCCCGCGTCCGCAGATAGTACATGCCCGTCTTG 80064 ||||| | |||||| | | |||||| | ||||| ||||| |||||||||||||||||| Sbjct 33476 ACCGTGAACTGAATCGCGTCGGCCTTCGGTCGCGTGCGCAGGTAGTACATGCCCGTCTTG 33417 Query 80065 AGGCCCTTCTTCCAGCCGTACAGGTGCATAGAACTGAGCTTCGCAAGTGTGGGGTTCTCC 80124 || ||||||||||| |||| | |||||| || | ||||| | || || | | | Sbjct 33416 AGACCCTTCTTCCACGCGTAGAAGTGCATGGACGTCAGCTTGCTGATCGTCGGCTCCGCG 33357 Query 80125 ATGAAGATGTTCAGAGACTGAGACTGACAGATGAAAGCCCCACGATCTGCCGCCATTTCA 80184 ||| | ||| || ||||| ||| |||||| | || || || || || ||||| || Sbjct 33356 ATGTGCACGTTGAGCGACTGGCTCTGGCAGATGTAGGCGCCGCGGTCGGCGGCCATGTCG 33297 Query 80185 ATAATTGACTTTTGTGGAATTTCCCATAC-----TGTACGATACACCTT-ACGAAGCTCC 80238 | | | ||| || || ||||| || ||||| | | |||| ||| | ||| Sbjct 33296 AGCACGGCCTTCTGCTTGATCTCCCACACGGTCTTGTAC--TTCTCCTTCACGGCG-TCC 33240 Query 80239 TCTGGA--ATGTCCAGATTTTGCACACTGCCACCGTCCTTTACAATTTGATTTTTCAATT 80296 ||| | | || || ||||| ||| ||| | | || || || || | Sbjct 33239 G--GGATCACGCGCACGTTCTGCACCGAGCCGTGGTCGTGGAGGATCTGGTTGCGCACCT 33182 Query 80297 CAGACGTCCAGACACCAAGCTTGTGCAGATCTTTCACAAGGTGCTTGTTAATCATGACAA 80356 | | |||||||| || |||| | || || |||| |||| |||||| | || | Sbjct 33181 CGGGCGTCCAGATGCCGAGCTCGATGAGCTCCTTCATGAGGTACTTGTTCACGATCGTGA 33122 Query 80357 ACTCTCCCGCGAGGGTGCGACGCAGATACAGGTTTGTAGTGTAAGGCTCAAATGCCTCGT 80416 |||| || ||||| ||| || |||| ||| || ||| | ||||| | | ||||| Sbjct 33121 ACTCGCCAGCGAGCACGCGGCGGTTGTACATGTTGGTCGTGAACGGCTCGATCGACTCGT 33062 Query 80417 TGTTTCCGAGGATCTGAGCCGTGCTCGCCGTCGGCATCGGGCCGACCAACAGTGAATTCC 80476 |||| ||||||||||| || || ||||||||||||||| ||| || ||| || || | Sbjct 33061 TGTTGCCGAGGATCTGCGCGGTCGACGCCGTCGGCATCGGCGCGAGCAGCAGCGAGTTGC 33002 Query 80477 GCAGGCCGTGCTTCTTGA---TATCCTCG--CGCAAATCTGACCAAAAATCAACCCCAA- 80530 ||| ||||| || | || | ||| | ||| | | || | | |||| | Sbjct 33001 GCACGCCGTACTGCGCGACGCTCGCCTTGAGCGCGGCCCAGTCCCAGAG---ACCCGACG 32945 Query 80531 -CGCTGTGAC--CCCACATGTCGTGCTGCAAGATGCCCTCCGACGCCGGAGACCCCGCGA 80587 || ||||| ||||||||||| ||| |||||||||| | | || || ||| || Sbjct 32944 TCGGCGTGACGCCCCACATGTCGAACTGGAAGATGCCCTTGCTCACGGGCGAACCCTCGT 32885 Query 80588 ACGTCTCGTACGGGCCCTCCGTCTTGGCCAGCTCACACGA---CTCCATAAGGGCCGCGT 80644 | | |||||||||| | | | || ||||| ||| ||||||| ||| Sbjct 32884 AGCTGCCGTACGGGCCGTGCTCCCGTGCGAGCTCCATCGAGGCCTCCATA------GCGC 32831 Query 80645 GATAAATGCA----CTCAAAGACGCCCTTGTTCACACCGCGCGCCT-GTGGGTCGTCGAA 80699 | || | || ||| |||| | |||||| | |||| |||| || | || ||||| Sbjct 32830 CA-AAGTACAGCGTCTCGAAGATGTTCTTGTTGAGCTCGCGGGCCTCGTCGCTC-TCGAA 32773 Query 80700 CGACAAGCCCATCATCATGAACACGTCAGCCAGGCCCTGAACGCCGATGGCGATCGGGCG 80759 || ||||||| | |||||| |||| || || ||||| ||||||||| |||||||||| Sbjct 32772 CGCGTAGCCCATGAGGATGAACGCGTCCGCGAGACCCTGCACGCCGATGCCGATCGGGCG 32713 Query 80760 GTGGCGCTTGTTCGATCGCTCGGCCTCCGGAATTGGGTAAAAGTTATTATCGATGACGCG 80819 ||||||| ||| ||||||||||| || || ||||| |||| | |||||||| Sbjct 32712 GTGGCGCAGGTTGCTGCGCTCGGCCTCGGGGATCGGGTAGTAGTTGATGTCGATGACCTT 32653 Query 80820 GTTCAGGTTGCGTGTAACAACCCGTGTAACATCATGAAGTTTCTGAAAGTCGAA---TTG 80876 |||||||||||| || || ||| || | || | || |||| ||||| || | Sbjct 32652 GTTCAGGTTGCGCGTGACGACCTTGGTGATGTCGTAGAGCTTCTTGAAGTCAAAGGTCTT 32593 Query 80877 GTTCCCCTTCACAAATGCCGGAAGGCTC-AGGGACGCCAGATTGCACACGGCCACCTCTT 80935 || | ||||||| ||| || | | |||||| || |||||||| || ||||| | Sbjct 32592 GTCGTCGGTCACAAA-CTTGGACAGCGCGATGGACGCGAGGTTGCACACCGCGACCTCAT 32534 Query 80936 CAGCATCTGTAAACTCGACGATTTCCGTGCACAAATTAGAAGACTTAATTGTACCCAGGT 80995 | | || |||||| | || ||| | || || || || || |||| Sbjct 32533 CGGGCGACGTGTACTCGAGCACCTCGCAGCAGAGGTTGCTCGAGCGGATCGTGCCGAGGT 32474 Query 80996 TTTTCTGGTTTGACTTGGCGTTGCAAGCGTCCTTGTAGCACATGTACGGGGTACCGGTCT 81055 | | |||||| |||||| |||||| | ||||||||| ||||||||| || || |||| Sbjct 32473 TCTGCTGGTTCGACTTGCGGTTGCACGAGTCCTTGTACAGCATGTACGGCGTGCCCGTCT 32414 Query 81056 CGACCTGTGACTTGAGGATGGCGTCCCAAATCTCGCGCGCCTTGACCACCTTGCGGAATT 81115 ||| ||| |||| |||||| ||| ||| | || |||| || | |||||| Sbjct 32413 CGATCTGCGACTCGAGGATCGCGAACCAGAGCTGCTGCGCGCGGATCGTCTTGCGCGCGC 32354 Query 81116 TGCCTTCGGCCACATACTTGGCGTA-AGCTTCGTCGAACTTGGCACCGTGAAGTTCAGT- 81173 ||| ||| | | |||| | ||| ||| | ||||||| | | || | || || Sbjct 32353 GGCCCTCGCGCTCGTACTGGTGGTACAGC-GCCTCGAACTCGTCGCC-CCACGTCGTGTA 32296 Query 81174 GAGGTCTGGGCACTCGTTAGGGCACATCAGGTGCCAGTCGGTGTCGTTCTCTACAGCCTT 81233 ||| | || |||||| ||||| | |||| ||| ||| || | ||| || ||| Sbjct 32295 GAGCCCCGGCGCCTCGTTCGGGCAGAACAGGCTCCACTCGCCGTTGGCCTCGACGCGCTT 32236 Query 81234 CATGAAAGCGTCAGGGATCCAGAGGGCGGTGAACAGGTCGCGGCAGCGCGCCTCCTCATC 81293 |||||| || |||||||| | ||| ||| || || || ||| | ||| | Sbjct 32235 CATGAAGAGATCGGGGATCCACATCGCGTAGAAGAGATCACGCGCGCGGTGCAGCTCGTT 32176 Query 81294 ACCCTGGTTGAGGCGCAACTCGAGAAAGTCCATGATGTCCGCATGCCATGGCTCCAGATA 81353 || ||||| | || || || || | |||||| || ||||| |||||||| || Sbjct 32175 GCCGTGGTTCTTCTTGAGGTCCAGGAACTCGAAGATGTCGGCGTGCCACGGCTCCAGGTA 32116 Query 81354 CACGGCGATCGACCCCTTGCG---ACGGCCACCCTGGTTGACGTAACGGGCAGTCGCGTT 81410 || |||| ||| |||||||| | ||| ||||||| |||||| || || || |||| Sbjct 32115 CATCGCGAACGAGCCCTTGCGCTTGCCGCCGCCCTGGTCGACGTAGCGCGCCGTGTCGTT 32056 Query 81411 AAATACACGCAACATAGGGATGATACCATCTGACTGACCGTTCGTACCCACGATACGCGA 81470 || || |||| ||| || | || || | ||| |||||||| || ||| ||| Sbjct 32055 GAAGACGCGCAGCATGGGCACGAGGCCGTTCGACGAGCCGTTCGTGCCGCGGATGTACGA 31996 Query 81471 CCCCTTGGCGCGCACCTTGCTGATTGAAAGACCGATGCCACCTGACCACTTTGAAATCTG 81530 | | ||||| | ||| | | |||||||| || | |||||| || || Sbjct 31995 GTTCGTCGCGCGGATGTTGTGCACGCTGACGCCGATGCCGCCAGCCCACTTGGAGATGCA 31936 Query 81531 AGCACACCGGTTCATGGTCTCATAAATTCCCTCGATGCTATCTTTTTTCATGTCAAGCAA 81590 || ||| | || | || || || || |||||||| || | |||||| | |||| Sbjct 31935 CGCGCACTGCTTGAGCGTGTCGTAGATGCCCTCGATCGAGTCGTCCTTCATGGCGAGCAG 31876 Query 81591 GAAACAGCTTGACATCTGAGGGCTTTTTGAGCCGGCATTGAACAGTGTTGGGGTCGCGTG 81650 ||| || |||| ||| |||| | ||| || |||||||| || || |||||||| Sbjct 31875 GAAGCACGACGACAGCTGCGGGCGCGGCGTGCCCGCGTTGAACAGCGTCGGCGTCGCGTG 31816 Query 81651 AATGAA 81656 |||| Sbjct 31815 CGTGAA 31810 >seq5583 Length=27463 Score = 190 bits (210), Expect = 2e-43 Identities = 306/433 (71%), Gaps = 10/433 (2%) Strand=Plus/Minus Query 31977 CGTGGCGGACGGCCTCAAGCCTTCACAGCGCAAGGTGATATACGCCTGCCTCAAGAAGAA 32036 ||||| |||||||| ||| || |||||||||||| | | ||| ||||| ||| || Sbjct 18496 CGTGGTCGACGGCCTGAAGGTCTCGCAGCGCAAGGTGCTCTTCGCGTGCCTGAAGCGCAA 18437 Query 32037 CCTGTCGAGTGACATGAAGGTGGCGCAGCTGTCGGGCTACGTGGCAG--AGCAAACGGCC 32094 ||| ||| || | ||||| |||||||| | |||||| |||| |||| ||||| Sbjct 18436 GCTGACGAAGGAAGTCAAGGTCGCGCAGCTCGCTGGCTACT--GCAGTGAGCACACGGCG 18379 Query 32095 TATCACCACGGCGAGGCGTCGCTCCAGGGCACCATTGTCAACCTTGCTCAGAACTTTGTC 32154 || |||||||||||||||||||| || || || |||||| | || ||| ||| ||| Sbjct 18378 TACCACCACGGCGAGGCGTCGCTGCACTCGACGATCGTCAACATGGCGCAGGACTACGTC 18319 Query 32155 GGTGCAAATAACCTGAACTTACTCGAGCCATCTGGACAGTTTGGGACCCGGCTCGCCGGT 32214 || || || |||||| | ||| | ||||| ||||||||||| || ||||| || Sbjct 18318 GGCGCCAACAACCTGCCGCTGCTCTATCCATCGGGACAGTTTGGCACGCGGCTGCAGGGA 18259 Query 32215 GGCAAGGATGCTGCGAGCTCCCGTTACATCTTCACCCGTCTCGCA-CCTTCGACGCGCAA 32273 |||||||| || ||||| | || ||||||||||| | || ||| | ||||| Sbjct 18258 GGCAAGGACGCCGCGAGTCCGCGCTACATCTTCACGCTGCT-GCAGAAGTACACGCGGCT 18200 Query 32274 GATTTTCGACCCGTCG--GACGATGCGGTGCTCAAGTACAATTTTGATGACGGTCAGCGG 32331 | | ||| |||| | ||||| ||| |||| || ||| ||||| || | | Sbjct 18199 GCTGTTC--CCCGAGGACGACGACGCGCTGCTGAACTACGTGGACGATGATGGATACCCC 18142 Query 32332 GTCGAGCCGGTGTTCTACAGTCCGGTGCTTCCGATGATCTTGGTGAACGGTGCAGAAGGC 32391 || |||||| | ||| ||| | || |||||| | ||| | ||||| ||||||||| Sbjct 18141 GTGGAGCCGCACTACTATGTGCCGATCCTGCCGATGCTGTTGATCAACGGCGCAGAAGGC 18082 Query 32392 ATCGGAACGGGGT 32404 ||||| || |||| Sbjct 18081 ATCGGCACTGGGT 18069 >seq2702 Length=56295 Score = 143 bits (158), Expect = 3e-29 Identities = 168/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| ||||| |||||||| || ||||||||||| || || || || || ||| | Sbjct 26765 ATGCAGATCTTCGTCAAGACTCTGACCGGCAAGACGATCACGCTCGACGTCGAGCCTTCG 26824 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || ||||||| ||| | ||| || || ||||||||||||||||| ||||| || ||| Sbjct 26825 GACAGCATTGACAATGTCAAGCAGAAGATCCAGGACAAGGAGGGAATCCCTCCGGATCAG 26884 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 ||||| || || || || || ||||| |||||||| | || || || | ||||| || Sbjct 26885 CAGCGCCTGATCTTCGCCGGCAAGCAGCTCGAGGACGGCCGCACGCTCTCGGACTACAAC 26944 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 |||| ||||| || || || || || || | || || || ||||| Sbjct 26945 ATCCAGAAGGAGTCGACGCTCCACCTGGTGCTCCGCCTGCGTGGTGG 26991 >seq1220 Length=9499 Score = 131 bits (144), Expect = 2e-25 Identities = 165/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| ||||| || |||||||| || |||||||| || || || || || ||| | Sbjct 34 ATGCAGATCTTCGTGAAGACGCTGACGGGCAAGACGATCACGCTCGACGTGGAGCCGTCG 93 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || || | || | ||| || ||||||||||||||||| ||||| || |||||| Sbjct 94 GACTCGATCGACAACGTCAAGCAGAAGATTCAGGACAAGGAGGGCATTCCGCCGGACCAG 153 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 ||||| || || || ||||| ||||| || ||||| | || || || | ||||| || Sbjct 154 CAGCGCCTGATCTTCGCTGGCAAGCAGCTGGAGGACGGCCGCACGCTGTCGGACTACAAC 213 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 |||| ||||| || || || || || || ||||||| || ||||| Sbjct 214 ATCCAGAAGGAGTCGACGCTGCACCTGGTGCTGCGTCTGCGTGGTGG 260 >seq4347 Length=93765 Score = 116 bits (128), Expect = 4e-21 Identities = 355/541 (66%), Gaps = 7/541 (1%) Strand=Plus/Minus Query 64319 TGTGGGAGCTTTACAAGAAAGCCATCGCAAGTTTCTGGACGGTCGAGGAGGTTGATCTCG 64378 ||||| || | |||||||| ||| || || |||||||| | ||||||| | ||||||| Sbjct 73273 TGTGGCAGATGTACAAGAAGGCCGAGGCGAGCTTCTGGACCGCCGAGGAGATCGATCTCG 73214 Query 64379 CCAAGGATCTCAGCGACTGGGAAAACCTAAACTCACAG-GAACAGCACTTCATCAAGTTG 64437 | || |||| ||||||| ||||| | | ||| || | ||||| |||||| Sbjct 73213 TGCACGACCTCAAGGACTGGGGCAACCTCA-CGGACAACGAGCGCCACTTTATCAAGCAC 73155 Query 64438 GTCCTAGCATTCTTCGCATCAAGTGACGGAATTGTGTTTGAGAATTTGGACCTAAATTTT 64497 ||||| || |||||||| | || ||||| || || ||||| | | | || || Sbjct 73154 GTCCTCGCGTTCTTCGCGGCGAGCGACGGTATCGTCAACGAGAACCTCGCGATGAACTTC 73095 Query 64498 ACAAAGGATGTTCAGATCCCAGAGGCGCGGTCATTCTATGCGTATCAGGGATTTAACGAA 64557 | | || || ||| | || |||||||| | ||||||| | ||| | || Sbjct 73094 AGCAGCGAGGTGCAGGTTCCTGAGGCGCGTTGCTTCTATGGCTTCCAGATCGCCATTGAG 73035 Query 64558 AGTATTCATGGCGAGACGTATTCGCTCATGATTGACAAGTTTGTTCGGGATCCTGTCG-A 64616 | || || ||| ||| ||||| | ||||||| || | ||| || | || | Sbjct 73034 AACATCCACTCGGAGGTGTACTCGCTGCTCATTGACACGTACATCAAGGA-CCAGACGGA 72976 Query 64617 GAAGGATGGACTGTTCAGGGCTATAGAGACTGTACCCGCTGTTACTAAAAAGGCTGAATG 64676 |||| | || || | || || ||||| | || || || ||||| | || Sbjct 72975 GAAGAACCACCTCCTCCGCGCCATCGAGACCATTCCATGCGTGCAGAAGAAGGCGCACTG 72916 Query 64677 GGCCATCCGGTGGAT-GAATCGTG--GGTCGTCGTTTGGTCAGCGTCTCGCAGCTTTTGC 64733 ||| || |||| || ||| | | || | |||| | |||| | | || || || Sbjct 72915 GGCGCTCAAGTGGTGCGACTCGCGCCGCGCGGCTTTTGCTGAGCGCATTGTCGCGTTCGC 72856 Query 64734 CTGTGTGGAAGGAATTTTCTTTTCTGGGTCATTCTGTTCTATTTTCTGGCTAAAAAAGCG 64793 || || || |||||||| || || || ||||| || || |||||||| || ||||| Sbjct 72855 TGCCGTTGAGGGCATTTTCTTCTCGGGCTCGTTCTGCTCCATCTTCTGGCTCAAGAAGCG 72796 Query 64794 GGGCCTGATGCCAGGTCTGTCGTTTTCGAACGAGCTGATCTCTCGGGACGAGGGGCTCCA 64853 || || ||||| || || || ||||||||||| ||||| || || ||||| ||||| Sbjct 72795 TGGTCTCATGCCTGGCCTCAGCTTCTCGAACGAGCTCATCTCGCGCGATGAGGGCCTCCA 72736 Query 64854 C 64854 | Sbjct 72735 C 72735 >seq8570 Length=35084 Score = 95.1 bits (104), Expect = 1e-14 Identities = 235/362 (65%), Gaps = 0/362 (0%) Strand=Plus/Plus Query 24585 GAGGTCTATAACCTAGGTGCCCAGTCACACGTCAAGCTGTCGTTTGACCAACCCGAGTAC 24644 ||| |||| || || | || ||| ||||||||| ||||||| || |||||||| Sbjct 29153 GAGATCTACAATCTCGCCGCGATGTCGCACGTCAAGGTGTCGTTCGAGATGTCCGAGTAC 29212 Query 24645 ACGGCCAACGTGGATGCTCTAGGCACCCTAAGAATTCTTGAAGCAATTCGCNNNNNNNNN 24704 |||||| |||| || || || ||||| || || | || | || ||| Sbjct 29213 ACGGCCGACGTCGACGCGCTTGGCACACTGCGACTGCTCAACTGCATCCGCACGTGCGGC 29272 Query 24705 NNNNNNTTGAAATTCAGATTTTATCAGGCGGGTACGAGTGAGATGTTTGGCAAGGTGCAG 24764 || || |||||||||||| || || ||| | | ||||| ||||| Sbjct 29273 ATGGAGAAGACGACCAAGTTTTATCAGGCGTCGACCAGCGAGCTCTACGGCAAAGTGCAA 29332 Query 24765 GAGACGCCACAGTCGGAGACCACTCCATTTTATCCGCGAAGCCCGTATGGGGTCTCAAAG 24824 | ||||| ||| ||| ||| || ||||| ||||| || || || ||| | ||| Sbjct 29333 GCCACGCCGCAGAACGAGCTCACGCCGTTTTACCCGCGCTCGCCCTACGGTGTCGCCAAG 29392 Query 24825 GTGTTCGCGTACTGGATAACCAAGAACTACCGTGAGGCCCATGGGATATATGCATGCAAC 24884 ||| |||||||||| | |||||| || ||||| | || || | ||| ||| Sbjct 29393 CAGTTTGCGTACTGGAGCGTCGTGAACTATCGCGAGGCGTACGGCATGTTTGCCGTGAAC 29452 Query 24885 GGAATTCTGTTCAACCATGAGTCGGAGCGTCGGGGACCTGAATTTGTTACACGAAAGATT 24944 || || || |||||||| ||| ||| || ||||| ||||| || || |||||| Sbjct 29453 GGTATCCTCTTCAACCACGAGAGCCCGCGACGCGGACCGACGTTTGTGACGCGCAAGATT 29512 Query 24945 AC 24946 || Sbjct 29513 AC 29514 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 570246297111040